Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 RNU6-162P-201ENST00000516228 103 ntBASIC2.1□□□□□ -2.07
RFX1P22670 SNORA25.15-201ENST00000516487 89 ntBASIC2.1□□□□□ -2.07
RFX1P22670 snoMBII-202.2-201ENST00000517263 86 ntBASIC2.1□□□□□ -2.07
RFX1P22670 AC138749.4-201ENST00000563970 127 ntBASIC2.1□□□□□ -2.07
RFX1P22670 MIR4285-201ENST00000581001 85 ntBASIC2.1□□□□□ -2.07
RFX1P22670 U7.3-201ENST00000616123 62 ntBASIC2.1□□□□□ -2.07
RFX1P22670 Y_RNA.17-201ENST00000362433 111 ntBASIC2.09□□□□□ -2.07
RFX1P22670 Y_RNA.363-201ENST00000365529 113 ntBASIC2.09□□□□□ -2.07
RFX1P22670 SNORA80D-201ENST00000384488 135 ntBASIC2.09□□□□□ -2.07
RFX1P22670 Y_RNA.508-201ENST00000384502 114 ntBASIC2.09□□□□□ -2.07
RFX1P22670 SNORA2B-201ENST00000384583 137 ntBASIC2.09□□□□□ -2.07
RFX1P22670 RNU6-813P-201ENST00000384691 107 ntBASIC2.09□□□□□ -2.07
RFX1P22670 AL591704.2-201ENST00000421658 181 ntBASIC2.09□□□□□ -2.07
RFX1P22670 RNA5SP182-201ENST00000516064 82 ntBASIC2.09□□□□□ -2.07
RFX1P22670 RNU6-86P-201ENST00000606534 107 ntBASIC2.09□□□□□ -2.07
RFX1P22670 AC008163.1-202ENST00000636004 2889 ntBASIC2.09□□□□□ -2.08
RFX1P22670 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.09□□□□□ -2.08
RFX1P22670 Y_RNA.330-201ENST00000365230 109 ntBASIC2.08□□□□□ -2.08
RFX1P22670 SNORA75.2-201ENST00000391138 150 ntBASIC2.08□□□□□ -2.08
RFX1P22670 SNORA75.3-201ENST00000391231 150 ntBASIC2.08□□□□□ -2.08
RFX1P22670 SUMO2P12-201ENST00000405924 140 ntBASIC2.08□□□□□ -2.08
RFX1P22670 SNORD111-201ENST00000408139 94 ntBASIC2.08□□□□□ -2.08
RFX1P22670 RNU6-887P-201ENST00000410660 100 ntBASIC2.08□□□□□ -2.08
RFX1P22670 SPINT5P-201ENST00000448174 155 ntBASIC2.08□□□□□ -2.08
RFX1P22670 RPS29P11-201ENST00000496507 171 ntBASIC2.08□□□□□ -2.08
RFX1P22670 AC036111.3-201ENST00000526389 112 ntBASIC2.08□□□□□ -2.08
RFX1P22670 MTND5P40-201ENST00000559945 246 ntBASIC2.08□□□□□ -2.08
RFX1P22670 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC2.08□□□□□ -2.08
RFX1P22670 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.08□□□□□ -2.08
RFX1P22670 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.08□□□□□ -2.08
RFX1P22670 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.08□□□□□ -2.08
RFX1P22670 HSBP1P2-201ENST00000299671 229 ntBASIC2.07□□□□□ -2.08
RFX1P22670 Y_RNA.567-201ENST00000384736 106 ntBASIC2.07□□□□□ -2.08
RFX1P22670 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
RFX1P22670 RNU7-21P-201ENST00000459430 62 ntBASIC2.07□□□□□ -2.08
RFX1P22670 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC2.07□□□□□ -2.08
RFX1P22670 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.07□□□□□ -2.08
RFX1P22670 Y_RNA.173-201ENST00000363776 113 ntBASIC2.06□□□□□ -2.08
RFX1P22670 BTF3P4-201ENST00000418852 495 ntBASIC2.06□□□□□ -2.08
RFX1P22670 U6.109-201ENST00000636749 87 ntBASIC2.06□□□□□ -2.08
RFX1P22670 RNA5SP133-201ENST00000363368 119 ntBASIC2.05□□□□□ -2.08
RFX1P22670 SNORA25.9-201ENST00000365087 128 ntBASIC2.05□□□□□ -2.08
RFX1P22670 RNA5SP190-201ENST00000365222 118 ntBASIC2.05□□□□□ -2.08
RFX1P22670 RNU4-52P-201ENST00000384209 138 ntBASIC2.05□□□□□ -2.08
RFX1P22670 AC106800.4-201ENST00000614905 153 ntBASIC2.05□□□□□ -2.08
RFX1P22670 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
RFX1P22670 Y_RNA.119-201ENST00000363301 96 ntBASIC2.04□□□□□ -2.08
RFX1P22670 RNU6ATAC2P-201ENST00000387943 126 ntBASIC2.04□□□□□ -2.08
RFX1P22670 SNORD12-201ENST00000391002 90 ntBASIC2.04□□□□□ -2.08
RFX1P22670 SNORD93-201ENST00000408813 74 ntBASIC2.04□□□□□ -2.08
RFX1P22670 SNORD79.1-201ENST00000516069 84 ntBASIC2.04□□□□□ -2.08
RFX1P22670 RNA5SP364-201ENST00000516938 78 ntBASIC2.04□□□□□ -2.08
RFX1P22670 MIR4500-201ENST00000579472 76 ntBASIC2.04□□□□□ -2.08
RFX1P22670 AC090897.1-201ENST00000580909 226 ntBASIC2.04□□□□□ -2.08
RFX1P22670 Y_RNA.190-201ENST00000363964 101 ntBASIC2.03□□□□□ -2.08
RFX1P22670 Y_RNA.219-201ENST00000364232 113 ntBASIC2.03□□□□□ -2.08
RFX1P22670 SNORD58A-201ENST00000383875 65 ntBASIC2.03□□□□□ -2.08
RFX1P22670 MIR499A-201ENST00000384903 122 ntBASIC2.03□□□□□ -2.08
RFX1P22670 snoU13.21-201ENST00000459368 105 ntBASIC2.03□□□□□ -2.08
RFX1P22670 TRMT112P2-201ENST00000512910 132 ntBASIC2.03□□□□□ -2.08
RFX1P22670 RNU6-638P-201ENST00000516582 104 ntBASIC2.03□□□□□ -2.08
RFX1P22670 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.03□□□□□ -2.08
RFX1P22670 MIR4491-201ENST00000581087 68 ntBASIC2.03□□□□□ -2.08
RFX1P22670 AC103810.7-201ENST00000607821 91 ntBASIC2.03□□□□□ -2.08
RFX1P22670 RNU6-1244P-201ENST00000363614 108 ntBASIC2.02□□□□□ -2.09
RFX1P22670 RNU1-36P-201ENST00000365130 165 ntBASIC2.02□□□□□ -2.09
RFX1P22670 RNU6-910P-201ENST00000390844 107 ntBASIC2.02□□□□□ -2.09
RFX1P22670 SNORD78.1-201ENST00000390866 65 ntBASIC2.02□□□□□ -2.09
RFX1P22670 RNU6ATAC6P-201ENST00000408132 126 ntBASIC2.02□□□□□ -2.09
RFX1P22670 RNU6-321P-201ENST00000410912 106 ntBASIC2.02□□□□□ -2.09
RFX1P22670 RNU1-98P-201ENST00000458992 160 ntBASIC2.02□□□□□ -2.09
RFX1P22670 RNU7-90P-201ENST00000459216 62 ntBASIC2.02□□□□□ -2.09
RFX1P22670 SNORD13-201ENST00000459299 104 ntBASIC2.02□□□□□ -2.09
RFX1P22670 AC022137.1-201ENST00000483735 151 ntBASIC2.02□□□□□ -2.09
RFX1P22670 Y_RNA.685-201ENST00000516532 108 ntBASIC2.02□□□□□ -2.09
RFX1P22670 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.02□□□□□ -2.09
RFX1P22670 RNY1P1-201ENST00000364372 112 ntBASIC2.01□□□□□ -2.09
RFX1P22670 Y_RNA.588-201ENST00000391254 102 ntBASIC2.01□□□□□ -2.09
RFX1P22670 RNU6ATAC8P-201ENST00000408460 126 ntBASIC2.01□□□□□ -2.09
RFX1P22670 5S_rRNA.15-201ENST00000611169 127 ntBASIC2.01□□□□□ -2.09
RFX1P22670 IGLL4P-201ENST00000614590 133 ntBASIC2.01□□□□□ -2.09
RFX1P22670 Y_RNA.73-201ENST00000362910 113 ntBASIC2□□□□□ -2.09
RFX1P22670 RNU6-934P-201ENST00000365154 107 ntBASIC2□□□□□ -2.09
RFX1P22670 RNU7-185P-201ENST00000459215 60 ntBASIC2□□□□□ -2.09
RFX1P22670 SNORA70.22-201ENST00000517160 124 ntBASIC2□□□□□ -2.09
RFX1P22670 AL359821.1-201ENST00000605519 182 ntBASIC2□□□□□ -2.09
RFX1P22670 SNORA16.1-201ENST00000364597 132 ntBASIC1.99□□□□□ -2.09
RFX1P22670 SNORD83.1-201ENST00000411362 77 ntBASIC1.99□□□□□ -2.09
RFX1P22670 MIR8070-201ENST00000616510 88 ntBASIC1.99□□□□□ -2.09
RFX1P22670 AC084768.2-201ENST00000622736 221 ntBASIC1.99□□□□□ -2.09
RFX1P22670 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
RFX1P22670 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.98□□□□□ -2.09
RFX1P22670 AC023934.1-201ENST00000574529 2389 ntBASIC1.98□□□□□ -2.09
RFX1P22670 SNORD116-10-201ENST00000363791 102 ntBASIC1.98□□□□□ -2.09
RFX1P22670 Y_RNA.355-201ENST00000365462 98 ntBASIC1.98□□□□□ -2.09
RFX1P22670 RNU6-675P-201ENST00000384236 104 ntBASIC1.98□□□□□ -2.09
RFX1P22670 SNORA17.3-201ENST00000391159 129 ntBASIC1.98□□□□□ -2.09
RFX1P22670 HMGN2P38-201ENST00000423806 265 ntBASIC1.98□□□□□ -2.09
RFX1P22670 RNU6-1194P-201ENST00000516208 104 ntBASIC1.98□□□□□ -2.09
RFX1P22670 AC023827.1-201ENST00000569247 97 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 240 ms