Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RNU6-949P-201ENST00000384040 107 ntBASIC1.11□□□□□ -2.23
LDB3O75112 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.11□□□□□ -2.23
LDB3O75112 RNU6-1165P-201ENST00000410119 107 ntBASIC1.11□□□□□ -2.23
LDB3O75112 RNA5SP237-201ENST00000410414 113 ntBASIC1.11□□□□□ -2.23
LDB3O75112 Y_RNA.601-201ENST00000410500 113 ntBASIC1.11□□□□□ -2.23
LDB3O75112 AC109327.2-201ENST00000448339 378 ntBASIC1.11□□□□□ -2.23
LDB3O75112 RNU7-62P-201ENST00000458856 62 ntBASIC1.11□□□□□ -2.23
LDB3O75112 RNU6-1018P-201ENST00000516577 106 ntBASIC1.11□□□□□ -2.23
LDB3O75112 SNORA70.22-201ENST00000517160 124 ntBASIC1.11□□□□□ -2.23
LDB3O75112 MIR6078-201ENST00000611069 100 ntBASIC1.11□□□□□ -2.23
LDB3O75112 MALAT1.1-201ENST00000618249 95 ntBASIC1.11□□□□□ -2.23
LDB3O75112 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.11□□□□□ -2.23
LDB3O75112 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.11□□□□□ -2.23
LDB3O75112 SNORD114-10-201ENST00000363409 72 ntBASIC1.1□□□□□ -2.23
LDB3O75112 RNU4-36P-201ENST00000364294 144 ntBASIC1.1□□□□□ -2.23
LDB3O75112 RNU6-1163P-201ENST00000364516 107 ntBASIC1.1□□□□□ -2.23
LDB3O75112 Y_RNA.369-201ENST00000365568 117 ntBASIC1.1□□□□□ -2.23
LDB3O75112 SNORA25-201ENST00000384384 134 ntBASIC1.1□□□□□ -2.23
LDB3O75112 MIR618-201ENST00000385287 98 ntBASIC1.1□□□□□ -2.23
LDB3O75112 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
LDB3O75112 RNU6-910P-201ENST00000390844 107 ntBASIC1.1□□□□□ -2.23
LDB3O75112 RNU6-613P-201ENST00000410412 108 ntBASIC1.1□□□□□ -2.23
LDB3O75112 AC004941.2-201ENST00000427009 228 ntBASIC1.1□□□□□ -2.23
LDB3O75112 TRMT112P2-201ENST00000512910 132 ntBASIC1.1□□□□□ -2.23
LDB3O75112 Y_RNA.659-201ENST00000515994 113 ntBASIC1.1□□□□□ -2.23
LDB3O75112 AC138749.4-201ENST00000563970 127 ntBASIC1.1□□□□□ -2.23
LDB3O75112 MIR4264-201ENST00000583520 66 ntBASIC1.1□□□□□ -2.23
LDB3O75112 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
LDB3O75112 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
LDB3O75112 Y_RNA.93-201ENST00000363066 109 ntBASIC1.09□□□□□ -2.23
LDB3O75112 RNY1P10-201ENST00000363268 113 ntBASIC1.09□□□□□ -2.23
LDB3O75112 SNORA80D-201ENST00000384488 135 ntBASIC1.09□□□□□ -2.23
LDB3O75112 RNU7-48P-201ENST00000458875 63 ntBASIC1.09□□□□□ -2.23
LDB3O75112 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.09□□□□□ -2.23
LDB3O75112 MIR2115-201ENST00000516657 100 ntBASIC1.09□□□□□ -2.23
LDB3O75112 RNU6-158P-201ENST00000517104 100 ntBASIC1.09□□□□□ -2.23
LDB3O75112 RNU6-762P-201ENST00000517107 102 ntBASIC1.09□□□□□ -2.23
LDB3O75112 AC027335.2-201ENST00000624030 375 ntBASIC1.09□□□□□ -2.23
LDB3O75112 Y_RNA.95-201ENST00000363079 95 ntBASIC1.08□□□□□ -2.24
LDB3O75112 RNU6-580P-201ENST00000365159 107 ntBASIC1.08□□□□□ -2.24
LDB3O75112 RNU6-53P-201ENST00000365367 106 ntBASIC1.08□□□□□ -2.24
LDB3O75112 MIR150-201ENST00000385048 84 ntBASIC1.08□□□□□ -2.24
LDB3O75112 MT-TN-201ENST00000387400 73 ntBASIC1.08□□□□□ -2.24
LDB3O75112 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
LDB3O75112 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.08□□□□□ -2.24
LDB3O75112 RNU6-321P-201ENST00000410912 106 ntBASIC1.08□□□□□ -2.24
LDB3O75112 AL591704.2-201ENST00000421658 181 ntBASIC1.08□□□□□ -2.24
LDB3O75112 SNORD79.1-201ENST00000516069 84 ntBASIC1.08□□□□□ -2.24
LDB3O75112 AP000753.3-201ENST00000604083 169 ntBASIC1.08□□□□□ -2.24
LDB3O75112 U7.3-201ENST00000616123 62 ntBASIC1.08□□□□□ -2.24
LDB3O75112 Y_RNA.168-201ENST00000363740 102 ntBASIC1.07□□□□□ -2.24
LDB3O75112 Y_RNA.190-201ENST00000363964 101 ntBASIC1.07□□□□□ -2.24
LDB3O75112 RNU6-865P-201ENST00000364772 107 ntBASIC1.07□□□□□ -2.24
LDB3O75112 Y_RNA.330-201ENST00000365230 109 ntBASIC1.07□□□□□ -2.24
LDB3O75112 SNORA2B-201ENST00000384583 137 ntBASIC1.07□□□□□ -2.24
LDB3O75112 SNORD12-201ENST00000391002 90 ntBASIC1.07□□□□□ -2.24
LDB3O75112 SNORD83.1-201ENST00000411362 77 ntBASIC1.07□□□□□ -2.24
LDB3O75112 RNU7-40P-201ENST00000516397 64 ntBASIC1.07□□□□□ -2.24
LDB3O75112 RNA5SP404-201ENST00000517118 132 ntBASIC1.07□□□□□ -2.24
LDB3O75112 AC036111.3-201ENST00000526389 112 ntBASIC1.07□□□□□ -2.24
LDB3O75112 RNU6-86P-201ENST00000606534 107 ntBASIC1.07□□□□□ -2.24
LDB3O75112 U6.109-201ENST00000636749 87 ntBASIC1.07□□□□□ -2.24
LDB3O75112 RNU6-294P-201ENST00000364999 102 ntBASIC1.06□□□□□ -2.24
LDB3O75112 RNU6-939P-201ENST00000384634 107 ntBASIC1.06□□□□□ -2.24
LDB3O75112 MIR222-201ENST00000384992 110 ntBASIC1.06□□□□□ -2.24
LDB3O75112 Y_RNA.588-201ENST00000391254 102 ntBASIC1.06□□□□□ -2.24
LDB3O75112 RPS29P28-201ENST00000446439 141 ntBASIC1.06□□□□□ -2.24
LDB3O75112 RNU7-21P-201ENST00000459430 62 ntBASIC1.06□□□□□ -2.24
LDB3O75112 AC023827.1-201ENST00000569247 97 ntBASIC1.06□□□□□ -2.24
LDB3O75112 AC090897.1-201ENST00000580909 226 ntBASIC1.06□□□□□ -2.24
LDB3O75112 SNORA4-201ENST00000584302 138 ntBASIC1.06□□□□□ -2.24
LDB3O75112 AC006254.2-201ENST00000603259 279 ntBASIC1.06□□□□□ -2.24
LDB3O75112 MIR377-201ENST00000362145 69 ntBASIC1.05□□□□□ -2.24
LDB3O75112 RNA5SP133-201ENST00000363368 119 ntBASIC1.05□□□□□ -2.24
LDB3O75112 SNORD38.1-201ENST00000363863 68 ntBASIC1.05□□□□□ -2.24
LDB3O75112 SNORD73B-201ENST00000364394 72 ntBASIC1.05□□□□□ -2.24
LDB3O75112 SNORD45B-201ENST00000364617 72 ntBASIC1.05□□□□□ -2.24
LDB3O75112 RNU4-83P-201ENST00000410863 133 ntBASIC1.05□□□□□ -2.24
LDB3O75112 RNU7-90P-201ENST00000459216 62 ntBASIC1.05□□□□□ -2.24
LDB3O75112 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.05□□□□□ -2.24
LDB3O75112 SNORA25.16-201ENST00000516741 121 ntBASIC1.05□□□□□ -2.24
LDB3O75112 RNU6-844P-201ENST00000517175 102 ntBASIC1.05□□□□□ -2.24
LDB3O75112 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.05□□□□□ -2.24
LDB3O75112 RNU6-369P-201ENST00000362515 102 ntBASIC1.04□□□□□ -2.24
LDB3O75112 Y_RNA.98-201ENST00000363109 102 ntBASIC1.04□□□□□ -2.24
LDB3O75112 RNU6-1244P-201ENST00000363614 108 ntBASIC1.04□□□□□ -2.24
LDB3O75112 RNU1-124P-201ENST00000363861 145 ntBASIC1.04□□□□□ -2.24
LDB3O75112 MIR548G-201ENST00000408442 89 ntBASIC1.04□□□□□ -2.24
LDB3O75112 MIR1285-1-201ENST00000408593 84 ntBASIC1.04□□□□□ -2.24
LDB3O75112 BX276092.1-201ENST00000427368 251 ntBASIC1.04□□□□□ -2.24
LDB3O75112 AC133485.1-201ENST00000567176 124 ntBASIC1.04□□□□□ -2.24
LDB3O75112 MIR4491-201ENST00000581087 68 ntBASIC1.04□□□□□ -2.24
LDB3O75112 AC103810.7-201ENST00000607821 91 ntBASIC1.04□□□□□ -2.24
LDB3O75112 AP001362.1-201ENST00000625165 124 ntBASIC1.04□□□□□ -2.24
LDB3O75112 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.03□□□□□ -2.24
LDB3O75112 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
LDB3O75112 Y_RNA.10-201ENST00000362371 110 ntBASIC1.03□□□□□ -2.24
LDB3O75112 Y_RNA.119-201ENST00000363301 96 ntBASIC1.03□□□□□ -2.24
LDB3O75112 Y_RNA.173-201ENST00000363776 113 ntBASIC1.03□□□□□ -2.24
LDB3O75112 RNY1P2-201ENST00000364820 117 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 184.6 ms