Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SNORA4-201ENST00000584302 138 ntBASIC1.86□□□□□ -2.11
TRIM13O60858 AL096840.1-201ENST00000603287 93 ntBASIC1.86□□□□□ -2.11
TRIM13O60858 PRELID3BP2-201ENST00000605362 201 ntBASIC1.86□□□□□ -2.11
TRIM13O60858 AL627230.6-201ENST00000611129 280 ntBASIC1.86□□□□□ -2.11
TRIM13O60858 Y_RNA.264-201ENST00000364665 102 ntBASIC1.85□□□□□ -2.11
TRIM13O60858 RNU6-203P-201ENST00000384038 104 ntBASIC1.85□□□□□ -2.11
TRIM13O60858 RNU6-1254P-201ENST00000391266 104 ntBASIC1.85□□□□□ -2.11
TRIM13O60858 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.85□□□□□ -2.11
TRIM13O60858 RNU6-322P-201ENST00000516010 103 ntBASIC1.85□□□□□ -2.11
TRIM13O60858 SNORD111.1-201ENST00000516421 86 ntBASIC1.85□□□□□ -2.11
TRIM13O60858 MIR4713-201ENST00000582691 75 ntBASIC1.85□□□□□ -2.11
TRIM13O60858 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
TRIM13O60858 MIR30D-201ENST00000362283 70 ntBASIC1.84□□□□□ -2.11
TRIM13O60858 SNORA16.1-201ENST00000364597 132 ntBASIC1.84□□□□□ -2.11
TRIM13O60858 Y_RNA.491-201ENST00000384417 107 ntBASIC1.84□□□□□ -2.11
TRIM13O60858 MIR516A2-201ENST00000384888 90 ntBASIC1.84□□□□□ -2.11
TRIM13O60858 MIR194-1-201ENST00000384892 85 ntBASIC1.84□□□□□ -2.11
TRIM13O60858 MIR516A1-201ENST00000385033 90 ntBASIC1.84□□□□□ -2.11
TRIM13O60858 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
TRIM13O60858 AC074348.1-201ENST00000426503 132 ntBASIC1.84□□□□□ -2.11
TRIM13O60858 JTBP1-201ENST00000441314 247 ntBASIC1.84□□□□□ -2.11
TRIM13O60858 RPL23AP42-201ENST00000471152 471 ntBASIC1.84□□□□□ -2.11
TRIM13O60858 MIR4299-201ENST00000577899 72 ntBASIC1.84□□□□□ -2.11
TRIM13O60858 SNORD92-201ENST00000585078 85 ntBASIC1.84□□□□□ -2.11
TRIM13O60858 MIR6740-201ENST00000618268 113 ntBASIC1.84□□□□□ -2.11
TRIM13O60858 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.84□□□□□ -2.12
TRIM13O60858 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
TRIM13O60858 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
TRIM13O60858 RNU6-208P-201ENST00000362431 107 ntBASIC1.83□□□□□ -2.12
TRIM13O60858 RNU5F-1-201ENST00000362507 117 ntBASIC1.83□□□□□ -2.12
TRIM13O60858 MIR548U-201ENST00000390728 81 ntBASIC1.83□□□□□ -2.12
TRIM13O60858 RNU6-243P-201ENST00000391140 107 ntBASIC1.83□□□□□ -2.12
TRIM13O60858 MIR1302-7-201ENST00000408841 72 ntBASIC1.83□□□□□ -2.12
TRIM13O60858 AC004965.1-201ENST00000413033 213 ntBASIC1.83□□□□□ -2.12
TRIM13O60858 RNU6-303P-201ENST00000517091 106 ntBASIC1.83□□□□□ -2.12
TRIM13O60858 DEFB122-202ENST00000569013 197 ntBASIC1.83□□□□□ -2.12
TRIM13O60858 AP000942.3-201ENST00000603702 160 ntBASIC1.83□□□□□ -2.12
TRIM13O60858 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
TRIM13O60858 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
TRIM13O60858 RNU6-649P-201ENST00000384463 107 ntBASIC1.82□□□□□ -2.12
TRIM13O60858 RNU6-466P-201ENST00000391224 103 ntBASIC1.82□□□□□ -2.12
TRIM13O60858 RNU6-587P-201ENST00000391282 106 ntBASIC1.82□□□□□ -2.12
TRIM13O60858 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
TRIM13O60858 MIR4419B-201ENST00000577260 68 ntBASIC1.82□□□□□ -2.12
TRIM13O60858 AL096861.1-201ENST00000610899 123 ntBASIC1.82□□□□□ -2.12
TRIM13O60858 MIR6852-201ENST00000621699 66 ntBASIC1.82□□□□□ -2.12
TRIM13O60858 MIR664A-201ENST00000626086 82 ntBASIC1.82□□□□□ -2.12
TRIM13O60858 ZNF355P-201ENST00000427301 3216 ntBASIC1.81□□□□□ -2.12
TRIM13O60858 SNORD41-201ENST00000386967 70 ntBASIC1.81□□□□□ -2.12
TRIM13O60858 AL161935.2-201ENST00000414627 60 ntBASIC1.81□□□□□ -2.12
TRIM13O60858 AC015818.7-201ENST00000428754 109 ntBASIC1.81□□□□□ -2.12
TRIM13O60858 AC245517.4-201ENST00000448601 281 ntBASIC1.81□□□□□ -2.12
TRIM13O60858 SNORA59A-201ENST00000459326 152 ntBASIC1.81□□□□□ -2.12
TRIM13O60858 MIR3192-201ENST00000584920 77 ntBASIC1.81□□□□□ -2.12
TRIM13O60858 MIRLET7F1-201ENST00000362202 87 ntBASIC1.8□□□□□ -2.12
TRIM13O60858 RNU4-82P-201ENST00000362443 140 ntBASIC1.8□□□□□ -2.12
TRIM13O60858 Y_RNA.205-201ENST00000364128 113 ntBASIC1.8□□□□□ -2.12
TRIM13O60858 RNU6-439P-201ENST00000384188 106 ntBASIC1.8□□□□□ -2.12
TRIM13O60858 RNU6-540P-201ENST00000384622 101 ntBASIC1.8□□□□□ -2.12
TRIM13O60858 SNORD90-201ENST00000391145 111 ntBASIC1.8□□□□□ -2.12
TRIM13O60858 RNU6-1165P-201ENST00000410119 107 ntBASIC1.8□□□□□ -2.12
TRIM13O60858 Y_RNA.596-201ENST00000410462 109 ntBASIC1.8□□□□□ -2.12
TRIM13O60858 RNU2-59P-201ENST00000410482 191 ntBASIC1.8□□□□□ -2.12
TRIM13O60858 RNU7-106P-201ENST00000459514 67 ntBASIC1.8□□□□□ -2.12
TRIM13O60858 MIR4264-201ENST00000583520 66 ntBASIC1.8□□□□□ -2.12
TRIM13O60858 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
TRIM13O60858 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.8□□□□□ -2.12
TRIM13O60858 RNU6-396P-201ENST00000365369 105 ntBASIC1.79□□□□□ -2.12
TRIM13O60858 MIR518E-201ENST00000385252 88 ntBASIC1.79□□□□□ -2.12
TRIM13O60858 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
TRIM13O60858 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
TRIM13O60858 RNA5SP425-201ENST00000410336 112 ntBASIC1.79□□□□□ -2.12
TRIM13O60858 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
TRIM13O60858 AC012493.3-201ENST00000604494 112 ntBASIC1.79□□□□□ -2.12
TRIM13O60858 MIR8074-201ENST00000615081 81 ntBASIC1.79□□□□□ -2.12
TRIM13O60858 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
TRIM13O60858 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.79□□□□□ -2.12
TRIM13O60858 MIR449A-201ENST00000362113 91 ntBASIC1.78□□□□□ -2.12
TRIM13O60858 Y_RNA.12-201ENST00000362393 112 ntBASIC1.78□□□□□ -2.12
TRIM13O60858 RNU6-957P-201ENST00000363652 99 ntBASIC1.78□□□□□ -2.12
TRIM13O60858 MIR513A1-201ENST00000385138 129 ntBASIC1.78□□□□□ -2.12
TRIM13O60858 MT-TF-201ENST00000387314 71 ntBASIC1.78□□□□□ -2.12
TRIM13O60858 MT-TN-201ENST00000387400 73 ntBASIC1.78□□□□□ -2.12
TRIM13O60858 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
TRIM13O60858 RN7SKP223-201ENST00000410582 62 ntBASIC1.78□□□□□ -2.12
TRIM13O60858 SNORD63B-201ENST00000411005 70 ntBASIC1.78□□□□□ -2.12
TRIM13O60858 UBE2DNL-203ENST00000474922 222 ntBASIC1.78□□□□□ -2.12
TRIM13O60858 U6.111-201ENST00000636093 83 ntBASIC1.78□□□□□ -2.12
TRIM13O60858 AL161722.3-201ENST00000605789 2983 ntBASIC1.78□□□□□ -2.12
TRIM13O60858 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.78□□□□□ -2.12
TRIM13O60858 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
TRIM13O60858 SNORD48-201ENST00000364953 64 ntBASIC1.77□□□□□ -2.13
TRIM13O60858 RNU6-800P-201ENST00000384473 103 ntBASIC1.77□□□□□ -2.13
TRIM13O60858 RNU6-1241P-201ENST00000384536 107 ntBASIC1.77□□□□□ -2.13
TRIM13O60858 SNORD30.1-201ENST00000391309 70 ntBASIC1.77□□□□□ -2.13
TRIM13O60858 RNU7-62P-201ENST00000458856 62 ntBASIC1.77□□□□□ -2.13
TRIM13O60858 RNU6-1194P-201ENST00000516208 104 ntBASIC1.77□□□□□ -2.13
TRIM13O60858 SNORA44.1-201ENST00000517031 108 ntBASIC1.77□□□□□ -2.13
TRIM13O60858 YWHAEP2-201ENST00000580066 112 ntBASIC1.77□□□□□ -2.13
TRIM13O60858 YWHAEP3-201ENST00000582767 121 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 205.9 ms