Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-205P-201ENST00000390858 107 ntBASIC1.74□□□□□ -2.13
CCDC9Q9Y3X0 COX6CP6-201ENST00000490840 228 ntBASIC1.74□□□□□ -2.13
CCDC9Q9Y3X0 MIR3152-201ENST00000579801 74 ntBASIC1.74□□□□□ -2.13
CCDC9Q9Y3X0 Y_RNA.30-201ENST00000362572 97 ntBASIC1.73□□□□□ -2.13
CCDC9Q9Y3X0 RNU6-1107P-201ENST00000364817 104 ntBASIC1.73□□□□□ -2.13
CCDC9Q9Y3X0 Y_RNA.366-201ENST00000365540 102 ntBASIC1.73□□□□□ -2.13
CCDC9Q9Y3X0 RNU6-106P-201ENST00000384405 107 ntBASIC1.73□□□□□ -2.13
CCDC9Q9Y3X0 RNY1P4-201ENST00000384595 115 ntBASIC1.73□□□□□ -2.13
CCDC9Q9Y3X0 MIR942-201ENST00000401111 86 ntBASIC1.73□□□□□ -2.13
CCDC9Q9Y3X0 RNU6-1190P-201ENST00000410811 104 ntBASIC1.73□□□□□ -2.13
CCDC9Q9Y3X0 AC067940.1-201ENST00000458411 300 ntBASIC1.73□□□□□ -2.13
CCDC9Q9Y3X0 SNORD124-201ENST00000459577 104 ntBASIC1.73□□□□□ -2.13
CCDC9Q9Y3X0 MIR3660-201ENST00000584845 100 ntBASIC1.73□□□□□ -2.13
CCDC9Q9Y3X0 Y_RNA.85-201ENST00000363014 111 ntBASIC1.72□□□□□ -2.13
CCDC9Q9Y3X0 SNORD12C-201ENST00000386307 89 ntBASIC1.72□□□□□ -2.13
CCDC9Q9Y3X0 RPS3AP1-201ENST00000413190 320 ntBASIC1.72□□□□□ -2.13
CCDC9Q9Y3X0 FABP5P4-201ENST00000437203 171 ntBASIC1.72□□□□□ -2.13
CCDC9Q9Y3X0 Y_RNA.677-201ENST00000516401 85 ntBASIC1.72□□□□□ -2.13
CCDC9Q9Y3X0 RNU6-537P-201ENST00000517277 103 ntBASIC1.72□□□□□ -2.13
CCDC9Q9Y3X0 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-554P-201ENST00000410466 106 ntBASIC1.71□□□□□ -2.14
CCDC9Q9Y3X0 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-240P-201ENST00000516098 97 ntBASIC1.71□□□□□ -2.14
CCDC9Q9Y3X0 RNA5SP61-201ENST00000516453 100 ntBASIC1.71□□□□□ -2.14
CCDC9Q9Y3X0 MIR5582-201ENST00000579697 68 ntBASIC1.71□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-766P-201ENST00000362478 107 ntBASIC1.7□□□□□ -2.14
CCDC9Q9Y3X0 RNU7-45P-201ENST00000459460 63 ntBASIC1.7□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-94P-201ENST00000607728 107 ntBASIC1.7□□□□□ -2.14
CCDC9Q9Y3X0 MIR6717-201ENST00000622747 73 ntBASIC1.7□□□□□ -2.14
CCDC9Q9Y3X0 Y_RNA.163-201ENST00000363702 113 ntBASIC1.69□□□□□ -2.14
CCDC9Q9Y3X0 Y_RNA.198-201ENST00000364013 98 ntBASIC1.69□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-690P-201ENST00000365242 106 ntBASIC1.69□□□□□ -2.14
CCDC9Q9Y3X0 Y_RNA.369-201ENST00000365568 117 ntBASIC1.69□□□□□ -2.14
CCDC9Q9Y3X0 Y_RNA.549-201ENST00000384657 102 ntBASIC1.69□□□□□ -2.14
CCDC9Q9Y3X0 MIR1302-5-201ENST00000408164 150 ntBASIC1.69□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-602P-201ENST00000411155 105 ntBASIC1.69□□□□□ -2.14
CCDC9Q9Y3X0 AL589743.1-201ENST00000551932 2712 ntBASIC1.68□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-349P-201ENST00000362402 107 ntBASIC1.68□□□□□ -2.14
CCDC9Q9Y3X0 Y_RNA.49-201ENST00000362714 112 ntBASIC1.68□□□□□ -2.14
CCDC9Q9Y3X0 RNY4P6-201ENST00000363667 96 ntBASIC1.68□□□□□ -2.14
CCDC9Q9Y3X0 Y_RNA.213-201ENST00000364178 111 ntBASIC1.68□□□□□ -2.14
CCDC9Q9Y3X0 Y_RNA.328-201ENST00000365208 113 ntBASIC1.68□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-756P-201ENST00000383997 107 ntBASIC1.68□□□□□ -2.14
CCDC9Q9Y3X0 MIR759-201ENST00000390224 91 ntBASIC1.68□□□□□ -2.14
CCDC9Q9Y3X0 RNU7-62P-201ENST00000458856 62 ntBASIC1.68□□□□□ -2.14
CCDC9Q9Y3X0 RN7SL793P-201ENST00000583259 296 ntBASIC1.68□□□□□ -2.14
CCDC9Q9Y3X0 AC012676.2-201ENST00000619258 186 ntBASIC1.68□□□□□ -2.14
CCDC9Q9Y3X0 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.68□□□□□ -2.14
CCDC9Q9Y3X0 Y_RNA.323-201ENST00000365157 109 ntBASIC1.67□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-1014P-201ENST00000383940 103 ntBASIC1.67□□□□□ -2.14
CCDC9Q9Y3X0 SNORA51.5-201ENST00000384126 131 ntBASIC1.67□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-1319P-201ENST00000390855 104 ntBASIC1.67□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-747P-201ENST00000390928 104 ntBASIC1.67□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-241P-201ENST00000391148 104 ntBASIC1.67□□□□□ -2.14
CCDC9Q9Y3X0 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.67□□□□□ -2.14
CCDC9Q9Y3X0 RNY4P30-201ENST00000410216 95 ntBASIC1.67□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-177P-201ENST00000411257 104 ntBASIC1.67□□□□□ -2.14
CCDC9Q9Y3X0 RNY4P20-201ENST00000516678 93 ntBASIC1.67□□□□□ -2.14
CCDC9Q9Y3X0 AL035470.1-201ENST00000622571 220 ntBASIC1.67□□□□□ -2.14
CCDC9Q9Y3X0 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.67□□□□□ -2.14
CCDC9Q9Y3X0 SNORA63.5-201ENST00000363548 123 ntBASIC1.66□□□□□ -2.14
CCDC9Q9Y3X0 RNY1P6-201ENST00000384193 109 ntBASIC1.66□□□□□ -2.14
CCDC9Q9Y3X0 RNU6-1113P-201ENST00000384348 107 ntBASIC1.66□□□□□ -2.14
CCDC9Q9Y3X0 SNORA26.6-201ENST00000391256 115 ntBASIC1.66□□□□□ -2.14
CCDC9Q9Y3X0 AC244023.1-201ENST00000426884 112 ntBASIC1.66□□□□□ -2.14
CCDC9Q9Y3X0 RPL39P34-201ENST00000477141 156 ntBASIC1.66□□□□□ -2.14
CCDC9Q9Y3X0 AC087343.1-201ENST00000477341 475 ntBASIC1.66□□□□□ -2.14
CCDC9Q9Y3X0 MIR4295-201ENST00000585286 85 ntBASIC1.66□□□□□ -2.14
CCDC9Q9Y3X0 AC242498.1-201ENST00000604134 111 ntBASIC1.66□□□□□ -2.14
CCDC9Q9Y3X0 AC021443.1-201ENST00000604478 211 ntBASIC1.66□□□□□ -2.14
CCDC9Q9Y3X0 Y_RNA.298-201ENST00000364960 107 ntBASIC1.65□□□□□ -2.15
CCDC9Q9Y3X0 Y_RNA.348-201ENST00000365403 103 ntBASIC1.65□□□□□ -2.15
CCDC9Q9Y3X0 Y_RNA.362-201ENST00000365518 110 ntBASIC1.65□□□□□ -2.15
CCDC9Q9Y3X0 RNU6-905P-201ENST00000384434 107 ntBASIC1.65□□□□□ -2.15
CCDC9Q9Y3X0 RPS29P28-201ENST00000446439 141 ntBASIC1.65□□□□□ -2.15
CCDC9Q9Y3X0 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.65□□□□□ -2.15
CCDC9Q9Y3X0 AP001318.4-201ENST00000616637 121 ntBASIC1.65□□□□□ -2.15
CCDC9Q9Y3X0 AC021613.1-201ENST00000623880 111 ntBASIC1.65□□□□□ -2.15
CCDC9Q9Y3X0 RNU6-580P-201ENST00000365159 107 ntBASIC1.64□□□□□ -2.15
CCDC9Q9Y3X0 MIR216A-201ENST00000385063 110 ntBASIC1.64□□□□□ -2.15
CCDC9Q9Y3X0 RNU7-164P-201ENST00000459221 62 ntBASIC1.64□□□□□ -2.15
CCDC9Q9Y3X0 MIR4661-201ENST00000582720 75 ntBASIC1.64□□□□□ -2.15
CCDC9Q9Y3X0 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.64□□□□□ -2.15
CCDC9Q9Y3X0 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.64□□□□□ -2.15
CCDC9Q9Y3X0 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
CCDC9Q9Y3X0 RNU6-640P-201ENST00000363693 105 ntBASIC1.63□□□□□ -2.15
CCDC9Q9Y3X0 Y_RNA.544-201ENST00000384650 113 ntBASIC1.63□□□□□ -2.15
CCDC9Q9Y3X0 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.63□□□□□ -2.15
CCDC9Q9Y3X0 OR2A41P-201ENST00000473586 105 ntBASIC1.63□□□□□ -2.15
CCDC9Q9Y3X0 UBL5P1-201ENST00000507979 193 ntBASIC1.63□□□□□ -2.15
CCDC9Q9Y3X0 MIR5009-201ENST00000578736 100 ntBASIC1.63□□□□□ -2.15
CCDC9Q9Y3X0 MIR4305-201ENST00000583252 102 ntBASIC1.63□□□□□ -2.15
CCDC9Q9Y3X0 AL136317.1-201ENST00000612653 226 ntBASIC1.63□□□□□ -2.15
CCDC9Q9Y3X0 RNU4-16P-201ENST00000364737 141 ntBASIC1.62□□□□□ -2.15
CCDC9Q9Y3X0 U8.6-201ENST00000364939 135 ntBASIC1.62□□□□□ -2.15
CCDC9Q9Y3X0 Y_RNA.430-201ENST00000384081 110 ntBASIC1.62□□□□□ -2.15
CCDC9Q9Y3X0 MIR1302-4-201ENST00000408701 150 ntBASIC1.62□□□□□ -2.15
CCDC9Q9Y3X0 RNU6-893P-201ENST00000458841 100 ntBASIC1.62□□□□□ -2.15
CCDC9Q9Y3X0 RNU7-123P-201ENST00000515911 60 ntBASIC1.62□□□□□ -2.15
CCDC9Q9Y3X0 SNORA40.13-201ENST00000516379 120 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 216.2 ms