Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNA5SP95-201ENST00000410319 137 ntBASIC1.31□□□□□ -2.2
LIMCH1Q9UPQ0 AL662814.1-201ENST00000617364 121 ntBASIC1.31□□□□□ -2.2
LIMCH1Q9UPQ0 MIR6740-201ENST00000618268 113 ntBASIC1.31□□□□□ -2.2
LIMCH1Q9UPQ0 Y_RNA.281-201ENST00000364774 94 ntBASIC1.3□□□□□ -2.2
LIMCH1Q9UPQ0 MIR548D2-201ENST00000384955 97 ntBASIC1.3□□□□□ -2.2
LIMCH1Q9UPQ0 MIR618-201ENST00000385287 98 ntBASIC1.3□□□□□ -2.2
LIMCH1Q9UPQ0 SNORD77B-201ENST00000391112 67 ntBASIC1.3□□□□□ -2.2
LIMCH1Q9UPQ0 RPS29P28-201ENST00000446439 141 ntBASIC1.3□□□□□ -2.2
LIMCH1Q9UPQ0 SNORA4-201ENST00000584302 138 ntBASIC1.3□□□□□ -2.2
LIMCH1Q9UPQ0 AC087741.2-201ENST00000619415 172 ntBASIC1.3□□□□□ -2.2
LIMCH1Q9UPQ0 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.29□□□□□ -2.2
LIMCH1Q9UPQ0 SNORA22-201ENST00000383907 134 ntBASIC1.29□□□□□ -2.2
LIMCH1Q9UPQ0 RNU6-44P-201ENST00000384045 107 ntBASIC1.29□□□□□ -2.2
LIMCH1Q9UPQ0 RNU6-939P-201ENST00000384634 107 ntBASIC1.29□□□□□ -2.2
LIMCH1Q9UPQ0 Y_RNA.549-201ENST00000384657 102 ntBASIC1.29□□□□□ -2.2
LIMCH1Q9UPQ0 RNU6-1237P-201ENST00000384777 107 ntBASIC1.29□□□□□ -2.2
LIMCH1Q9UPQ0 RPL39P34-201ENST00000477141 156 ntBASIC1.29□□□□□ -2.2
LIMCH1Q9UPQ0 RNU7-35P-201ENST00000517174 62 ntBASIC1.29□□□□□ -2.2
LIMCH1Q9UPQ0 AC023827.1-201ENST00000569247 97 ntBASIC1.29□□□□□ -2.2
LIMCH1Q9UPQ0 MIR548AE2-201ENST00000583456 67 ntBASIC1.29□□□□□ -2.2
LIMCH1Q9UPQ0 MIR6504-201ENST00000613520 61 ntBASIC1.29□□□□□ -2.2
LIMCH1Q9UPQ0 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.29□□□□□ -2.2
LIMCH1Q9UPQ0 AL589743.1-201ENST00000551932 2712 ntBASIC1.29□□□□□ -2.2
LIMCH1Q9UPQ0 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.28□□□□□ -2.2
LIMCH1Q9UPQ0 RNU1-124P-201ENST00000363861 145 ntBASIC1.28□□□□□ -2.2
LIMCH1Q9UPQ0 Y_RNA.362-201ENST00000365518 110 ntBASIC1.28□□□□□ -2.2
LIMCH1Q9UPQ0 RNU6-342P-201ENST00000384521 104 ntBASIC1.28□□□□□ -2.2
LIMCH1Q9UPQ0 MIR200A-201ENST00000384875 90 ntBASIC1.28□□□□□ -2.2
LIMCH1Q9UPQ0 AC067940.1-201ENST00000458411 300 ntBASIC1.28□□□□□ -2.2
LIMCH1Q9UPQ0 RNU7-79P-201ENST00000516082 62 ntBASIC1.28□□□□□ -2.2
LIMCH1Q9UPQ0 RNU7-40P-201ENST00000516397 64 ntBASIC1.28□□□□□ -2.2
LIMCH1Q9UPQ0 AC141846.1-201ENST00000568348 142 ntBASIC1.28□□□□□ -2.2
LIMCH1Q9UPQ0 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.28□□□□□ -2.2
LIMCH1Q9UPQ0 AL391516.1-201ENST00000554380 2449 ntBASIC1.27□□□□□ -2.21
LIMCH1Q9UPQ0 Y_RNA.85-201ENST00000363014 111 ntBASIC1.27□□□□□ -2.21
LIMCH1Q9UPQ0 Y_RNA.327-201ENST00000365201 102 ntBASIC1.27□□□□□ -2.21
LIMCH1Q9UPQ0 Y_RNA.344-201ENST00000365381 112 ntBASIC1.27□□□□□ -2.21
LIMCH1Q9UPQ0 MIR1276-201ENST00000408707 83 ntBASIC1.27□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-994P-201ENST00000410507 111 ntBASIC1.27□□□□□ -2.21
LIMCH1Q9UPQ0 RNA5SP404-201ENST00000517118 132 ntBASIC1.27□□□□□ -2.21
LIMCH1Q9UPQ0 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
LIMCH1Q9UPQ0 MIR30D-201ENST00000362283 70 ntBASIC1.26□□□□□ -2.21
LIMCH1Q9UPQ0 Y_RNA.49-201ENST00000362714 112 ntBASIC1.26□□□□□ -2.21
LIMCH1Q9UPQ0 SNORD115-19-201ENST00000363098 82 ntBASIC1.26□□□□□ -2.21
LIMCH1Q9UPQ0 SNORD115-18-201ENST00000363293 82 ntBASIC1.26□□□□□ -2.21
LIMCH1Q9UPQ0 SNORA63.5-201ENST00000363548 123 ntBASIC1.26□□□□□ -2.21
LIMCH1Q9UPQ0 SNORD115-17-201ENST00000364612 82 ntBASIC1.26□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-392P-201ENST00000364926 101 ntBASIC1.26□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-934P-201ENST00000365154 107 ntBASIC1.26□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-42P-201ENST00000384165 107 ntBASIC1.26□□□□□ -2.21
LIMCH1Q9UPQ0 FABP5P4-201ENST00000437203 171 ntBASIC1.26□□□□□ -2.21
LIMCH1Q9UPQ0 RPL39P25-201ENST00000449384 154 ntBASIC1.26□□□□□ -2.21
LIMCH1Q9UPQ0 RNA5SP480-201ENST00000516840 109 ntBASIC1.26□□□□□ -2.21
LIMCH1Q9UPQ0 MIR6078-201ENST00000611069 100 ntBASIC1.26□□□□□ -2.21
LIMCH1Q9UPQ0 Y_RNA.191-201ENST00000363972 113 ntBASIC1.25□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-755P-201ENST00000364400 103 ntBASIC1.25□□□□□ -2.21
LIMCH1Q9UPQ0 Y_RNA.309-201ENST00000365046 111 ntBASIC1.25□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-949P-201ENST00000384040 107 ntBASIC1.25□□□□□ -2.21
LIMCH1Q9UPQ0 SNORA32-201ENST00000384072 121 ntBASIC1.25□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.25□□□□□ -2.21
LIMCH1Q9UPQ0 PDCD5P2-201ENST00000507570 312 ntBASIC1.25□□□□□ -2.21
LIMCH1Q9UPQ0 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.25□□□□□ -2.21
LIMCH1Q9UPQ0 AL078603.1-201ENST00000603824 313 ntBASIC1.25□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-1107P-201ENST00000364817 104 ntBASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 Y_RNA.540-201ENST00000384638 111 ntBASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 MTATP6P29-201ENST00000415057 132 ntBASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 OR2A41P-201ENST00000473586 105 ntBASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 RNA5SP220-201ENST00000516298 104 ntBASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 AC068339.1-201ENST00000526965 141 ntBASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 SNORD114-21-201ENST00000606412 72 ntBASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 Y_RNA.773-201ENST00000607168 90 ntBASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-94P-201ENST00000607728 107 ntBASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 AL136317.1-201ENST00000612653 226 ntBASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 AL035470.1-201ENST00000622571 220 ntBASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 AL162726.3-218ENST00000636401 95 ntBASIC1.24□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-363P-201ENST00000362895 105 ntBASIC1.23□□□□□ -2.21
LIMCH1Q9UPQ0 RNY1P13-201ENST00000365030 105 ntBASIC1.23□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-1014P-201ENST00000383940 103 ntBASIC1.23□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.23□□□□□ -2.21
LIMCH1Q9UPQ0 MIR1912-201ENST00000410389 80 ntBASIC1.23□□□□□ -2.21
LIMCH1Q9UPQ0 RPS26P5-201ENST00000418544 335 ntBASIC1.23□□□□□ -2.21
LIMCH1Q9UPQ0 MIR1270-201ENST00000459320 83 ntBASIC1.23□□□□□ -2.21
LIMCH1Q9UPQ0 MIR5009-201ENST00000578736 100 ntBASIC1.23□□□□□ -2.21
LIMCH1Q9UPQ0 FAM71BP1-201ENST00000604431 523 ntBASIC1.23□□□□□ -2.21
LIMCH1Q9UPQ0 MIR1-1-201ENST00000362147 71 ntBASIC1.22□□□□□ -2.21
LIMCH1Q9UPQ0 SNORD114-10-201ENST00000363409 72 ntBASIC1.22□□□□□ -2.21
LIMCH1Q9UPQ0 SNORD114-24-201ENST00000365029 72 ntBASIC1.22□□□□□ -2.21
LIMCH1Q9UPQ0 Y_RNA.323-201ENST00000365157 109 ntBASIC1.22□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-616P-201ENST00000384353 107 ntBASIC1.22□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-816P-201ENST00000390914 107 ntBASIC1.22□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-1268P-201ENST00000391214 107 ntBASIC1.22□□□□□ -2.21
LIMCH1Q9UPQ0 RNU6-1239P-201ENST00000391310 107 ntBASIC1.22□□□□□ -2.21
LIMCH1Q9UPQ0 MIR4452-201ENST00000583004 71 ntBASIC1.22□□□□□ -2.21
LIMCH1Q9UPQ0 MIR6734-201ENST00000621166 68 ntBASIC1.22□□□□□ -2.21
LIMCH1Q9UPQ0 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.22□□□□□ -2.21
LIMCH1Q9UPQ0 U8.6-201ENST00000364939 135 ntBASIC1.21□□□□□ -2.22
LIMCH1Q9UPQ0 Y_RNA.507-201ENST00000384500 99 ntBASIC1.21□□□□□ -2.22
LIMCH1Q9UPQ0 MIR1302-5-201ENST00000408164 150 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 258.7 ms