Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MIR644A-201ENST00000385262 94 ntBASIC0.47□□□□□ -2.33
CHMP1AQ9HD42 RNU6-460P-201ENST00000391158 108 ntBASIC0.47□□□□□ -2.33
CHMP1AQ9HD42 SNORA68.3-201ENST00000515906 83 ntBASIC0.47□□□□□ -2.33
CHMP1AQ9HD42 RNU6-1053P-201ENST00000515930 101 ntBASIC0.47□□□□□ -2.33
CHMP1AQ9HD42 MTND5P34-201ENST00000568888 325 ntBASIC0.47□□□□□ -2.33
CHMP1AQ9HD42 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.47□□□□□ -2.33
CHMP1AQ9HD42 AC092634.7-201ENST00000621022 103 ntBASIC0.47□□□□□ -2.33
CHMP1AQ9HD42 Y_RNA.150-201ENST00000363562 102 ntBASIC0.46□□□□□ -2.34
CHMP1AQ9HD42 RNU6-291P-201ENST00000384720 107 ntBASIC0.46□□□□□ -2.34
CHMP1AQ9HD42 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.46□□□□□ -2.34
CHMP1AQ9HD42 AL157398.1-201ENST00000452981 186 ntBASIC0.46□□□□□ -2.34
CHMP1AQ9HD42 SNORA31.14-201ENST00000516728 116 ntBASIC0.46□□□□□ -2.34
CHMP1AQ9HD42 MIR337-201ENST00000362281 93 ntBASIC0.45□□□□□ -2.34
CHMP1AQ9HD42 MIR96-201ENST00000362288 78 ntBASIC0.45□□□□□ -2.34
CHMP1AQ9HD42 RNA5SP133-201ENST00000363368 119 ntBASIC0.45□□□□□ -2.34
CHMP1AQ9HD42 RNU6-886P-201ENST00000384319 105 ntBASIC0.45□□□□□ -2.34
CHMP1AQ9HD42 Y_RNA.536-201ENST00000384621 113 ntBASIC0.45□□□□□ -2.34
CHMP1AQ9HD42 RNU4-69P-201ENST00000410677 143 ntBASIC0.45□□□□□ -2.34
CHMP1AQ9HD42 RNU5E-3P-201ENST00000515913 68 ntBASIC0.45□□□□□ -2.34
CHMP1AQ9HD42 RNU6-531P-201ENST00000516694 104 ntBASIC0.45□□□□□ -2.34
CHMP1AQ9HD42 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.45□□□□□ -2.34
CHMP1AQ9HD42 AC022523.2-201ENST00000561045 150 ntBASIC0.45□□□□□ -2.34
CHMP1AQ9HD42 MIR3144-201ENST00000579460 79 ntBASIC0.45□□□□□ -2.34
CHMP1AQ9HD42 MIR4298-201ENST00000584380 73 ntBASIC0.45□□□□□ -2.34
CHMP1AQ9HD42 SNORD114-10-201ENST00000363409 72 ntBASIC0.44□□□□□ -2.34
CHMP1AQ9HD42 RNU6-915P-201ENST00000364943 103 ntBASIC0.44□□□□□ -2.34
CHMP1AQ9HD42 Y_RNA.398-201ENST00000383952 99 ntBASIC0.44□□□□□ -2.34
CHMP1AQ9HD42 Y_RNA.697-201ENST00000516776 113 ntBASIC0.44□□□□□ -2.34
CHMP1AQ9HD42 CYP3A137P-201ENST00000562436 69 ntBASIC0.44□□□□□ -2.34
CHMP1AQ9HD42 AC138749.4-201ENST00000563970 127 ntBASIC0.44□□□□□ -2.34
CHMP1AQ9HD42 MIR3121-201ENST00000579680 77 ntBASIC0.44□□□□□ -2.34
CHMP1AQ9HD42 AL137067.1-201ENST00000615933 120 ntBASIC0.44□□□□□ -2.34
CHMP1AQ9HD42 AC105081.1-201ENST00000617727 106 ntBASIC0.44□□□□□ -2.34
CHMP1AQ9HD42 U6.109-201ENST00000636749 87 ntBASIC0.44□□□□□ -2.34
CHMP1AQ9HD42 Y_RNA.8-201ENST00000362353 102 ntBASIC0.43□□□□□ -2.34
CHMP1AQ9HD42 RNA5SP432-201ENST00000362480 116 ntBASIC0.43□□□□□ -2.34
CHMP1AQ9HD42 SNORA36.1-201ENST00000363424 132 ntBASIC0.43□□□□□ -2.34
CHMP1AQ9HD42 Y_RNA.270-201ENST00000364693 104 ntBASIC0.43□□□□□ -2.34
CHMP1AQ9HD42 RNU6-1104P-201ENST00000384723 104 ntBASIC0.43□□□□□ -2.34
CHMP1AQ9HD42 Y_RNA.567-201ENST00000384736 106 ntBASIC0.43□□□□□ -2.34
CHMP1AQ9HD42 RNY4P20-201ENST00000516678 93 ntBASIC0.43□□□□□ -2.34
CHMP1AQ9HD42 MIRLET7D-201ENST00000362263 87 ntBASIC0.42□□□□□ -2.34
CHMP1AQ9HD42 Y_RNA.174-201ENST00000363781 105 ntBASIC0.42□□□□□ -2.34
CHMP1AQ9HD42 Y_RNA.299-201ENST00000364973 94 ntBASIC0.42□□□□□ -2.34
CHMP1AQ9HD42 RNU6-535P-201ENST00000384722 107 ntBASIC0.42□□□□□ -2.34
CHMP1AQ9HD42 SNORA40.8-201ENST00000411034 126 ntBASIC0.42□□□□□ -2.34
CHMP1AQ9HD42 SNORA25.12-201ENST00000516202 82 ntBASIC0.42□□□□□ -2.34
CHMP1AQ9HD42 RNU6-1194P-201ENST00000516208 104 ntBASIC0.42□□□□□ -2.34
CHMP1AQ9HD42 RNU6-794P-201ENST00000517261 64 ntBASIC0.42□□□□□ -2.34
CHMP1AQ9HD42 DEFB131E-201ENST00000532329 154 ntBASIC0.42□□□□□ -2.34
CHMP1AQ9HD42 SNORA25.18-201ENST00000607153 114 ntBASIC0.42□□□□□ -2.34
CHMP1AQ9HD42 RNU4-58P-201ENST00000363192 141 ntBASIC0.41□□□□□ -2.34
CHMP1AQ9HD42 RNU1-93P-201ENST00000364704 169 ntBASIC0.41□□□□□ -2.34
CHMP1AQ9HD42 SNORA8.2-201ENST00000384372 139 ntBASIC0.41□□□□□ -2.34
CHMP1AQ9HD42 MIR518A1-201ENST00000385068 85 ntBASIC0.41□□□□□ -2.34
CHMP1AQ9HD42 MIR513C-201ENST00000401352 84 ntBASIC0.41□□□□□ -2.34
CHMP1AQ9HD42 RNU6-469P-201ENST00000516253 101 ntBASIC0.41□□□□□ -2.34
CHMP1AQ9HD42 IGKV1-22-201ENST00000524313 326 ntBASIC0.41□□□□□ -2.34
CHMP1AQ9HD42 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.41□□□□□ -2.34
CHMP1AQ9HD42 MIR548X2-201ENST00000579776 100 ntBASIC0.41□□□□□ -2.34
CHMP1AQ9HD42 Y_RNA.119-201ENST00000363301 96 ntBASIC0.4□□□□□ -2.35
CHMP1AQ9HD42 SNORD118-201ENST00000363593 134 ntBASIC0.4□□□□□ -2.35
CHMP1AQ9HD42 RNA5SP245-201ENST00000364239 121 ntBASIC0.4□□□□□ -2.35
CHMP1AQ9HD42 AC098934.3-201ENST00000430450 190 ntBASIC0.4□□□□□ -2.35
CHMP1AQ9HD42 MTND5P41-201ENST00000517498 206 ntBASIC0.4□□□□□ -2.35
CHMP1AQ9HD42 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.4□□□□□ -2.35
CHMP1AQ9HD42 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.4□□□□□ -2.35
CHMP1AQ9HD42 Y_RNA.400-201ENST00000383963 111 ntBASIC0.39□□□□□ -2.35
CHMP1AQ9HD42 AC114737.2-201ENST00000421583 173 ntBASIC0.39□□□□□ -2.35
CHMP1AQ9HD42 RNU6-229P-201ENST00000516614 102 ntBASIC0.39□□□□□ -2.35
CHMP1AQ9HD42 Y_RNA.692-201ENST00000516627 105 ntBASIC0.39□□□□□ -2.35
CHMP1AQ9HD42 MIR4714-201ENST00000580728 77 ntBASIC0.39□□□□□ -2.35
CHMP1AQ9HD42 AC098479.1-201ENST00000609225 154 ntBASIC0.39□□□□□ -2.35
CHMP1AQ9HD42 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.39□□□□□ -2.35
CHMP1AQ9HD42 AP001340.1-201ENST00000624405 217 ntBASIC0.39□□□□□ -2.35
CHMP1AQ9HD42 SNORD44.1-201ENST00000363202 61 ntBASIC0.38□□□□□ -2.35
CHMP1AQ9HD42 Y_RNA.215-201ENST00000364204 112 ntBASIC0.38□□□□□ -2.35
CHMP1AQ9HD42 RNY1P2-201ENST00000364820 117 ntBASIC0.38□□□□□ -2.35
CHMP1AQ9HD42 MIR206-201ENST00000384872 86 ntBASIC0.38□□□□□ -2.35
CHMP1AQ9HD42 MIR569-201ENST00000385228 96 ntBASIC0.38□□□□□ -2.35
CHMP1AQ9HD42 RNU6-1321P-201ENST00000390905 107 ntBASIC0.38□□□□□ -2.35
CHMP1AQ9HD42 RNU6-237P-201ENST00000515985 71 ntBASIC0.38□□□□□ -2.35
CHMP1AQ9HD42 AC021753.1-201ENST00000635724 168 ntBASIC0.38□□□□□ -2.35
CHMP1AQ9HD42 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
CHMP1AQ9HD42 RNA5SP347-201ENST00000362445 119 ntBASIC0.37□□□□□ -2.35
CHMP1AQ9HD42 Y_RNA.114-201ENST00000363265 113 ntBASIC0.37□□□□□ -2.35
CHMP1AQ9HD42 SNORA63.5-201ENST00000363548 123 ntBASIC0.37□□□□□ -2.35
CHMP1AQ9HD42 Y_RNA.294-201ENST00000364916 102 ntBASIC0.37□□□□□ -2.35
CHMP1AQ9HD42 Y_RNA.420-201ENST00000384043 110 ntBASIC0.37□□□□□ -2.35
CHMP1AQ9HD42 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.37□□□□□ -2.35
CHMP1AQ9HD42 RNU6-1307P-201ENST00000391012 103 ntBASIC0.37□□□□□ -2.35
CHMP1AQ9HD42 SNORD71-201ENST00000411292 86 ntBASIC0.37□□□□□ -2.35
CHMP1AQ9HD42 RPS29P1-201ENST00000465274 159 ntBASIC0.37□□□□□ -2.35
CHMP1AQ9HD42 RNA5SP47-201ENST00000517230 109 ntBASIC0.37□□□□□ -2.35
CHMP1AQ9HD42 AP001328.1-201ENST00000528550 176 ntBASIC0.37□□□□□ -2.35
CHMP1AQ9HD42 MIR103A1-201ENST00000362165 78 ntBASIC0.36□□□□□ -2.35
CHMP1AQ9HD42 Y_RNA.280-201ENST00000364765 112 ntBASIC0.36□□□□□ -2.35
CHMP1AQ9HD42 Y_RNA.555-201ENST00000384673 110 ntBASIC0.36□□□□□ -2.35
CHMP1AQ9HD42 SNORD28-201ENST00000384706 75 ntBASIC0.36□□□□□ -2.35
CHMP1AQ9HD42 MT-TI-201ENST00000387365 69 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 226.9 ms