Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RNA5SP47-201ENST00000517230 109 ntBASIC0.1□□□□□ -2.39
CHMP4AQ9BY43 AC091304.10-201ENST00000641554 121 ntBASIC0.1□□□□□ -2.39
CHMP4AQ9BY43 RNU6-275P-201ENST00000364910 107 ntBASIC0.09□□□□□ -2.4
CHMP4AQ9BY43 SNORA32-201ENST00000384072 121 ntBASIC0.09□□□□□ -2.4
CHMP4AQ9BY43 Y_RNA.470-201ENST00000384307 117 ntBASIC0.09□□□□□ -2.4
CHMP4AQ9BY43 SNORD28-201ENST00000384706 75 ntBASIC0.09□□□□□ -2.4
CHMP4AQ9BY43 RNA5SP33-201ENST00000516687 98 ntBASIC0.09□□□□□ -2.4
CHMP4AQ9BY43 MRPS18CP4-201ENST00000535821 231 ntBASIC0.09□□□□□ -2.4
CHMP4AQ9BY43 MIR4639-201ENST00000584938 69 ntBASIC0.09□□□□□ -2.4
CHMP4AQ9BY43 RNU4-58P-201ENST00000363192 141 ntBASIC0.08□□□□□ -2.4
CHMP4AQ9BY43 RNA5SP133-201ENST00000363368 119 ntBASIC0.08□□□□□ -2.4
CHMP4AQ9BY43 RNU6-738P-201ENST00000384531 106 ntBASIC0.08□□□□□ -2.4
CHMP4AQ9BY43 Y_RNA.562-201ENST00000384695 113 ntBASIC0.08□□□□□ -2.4
CHMP4AQ9BY43 Y_RNA.660-201ENST00000516002 120 ntBASIC0.08□□□□□ -2.4
CHMP4AQ9BY43 RNU7-129P-201ENST00000516128 62 ntBASIC0.08□□□□□ -2.4
CHMP4AQ9BY43 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.08□□□□□ -2.4
CHMP4AQ9BY43 MIR4768-201ENST00000585270 74 ntBASIC0.08□□□□□ -2.4
CHMP4AQ9BY43 AC244669.1-204ENST00000621564 178 ntBASIC0.08□□□□□ -2.4
CHMP4AQ9BY43 MIR6828-201ENST00000636181 60 ntBASIC0.08□□□□□ -2.4
CHMP4AQ9BY43 SNORA9.1-201ENST00000362412 131 ntBASIC0.07□□□□□ -2.4
CHMP4AQ9BY43 RNU7-35P-201ENST00000517174 62 ntBASIC0.07□□□□□ -2.4
CHMP4AQ9BY43 MIR6718-201ENST00000616153 80 ntBASIC0.07□□□□□ -2.4
CHMP4AQ9BY43 U6.106-201ENST00000636360 105 ntBASIC0.07□□□□□ -2.4
CHMP4AQ9BY43 U6.109-201ENST00000636749 87 ntBASIC0.07□□□□□ -2.4
CHMP4AQ9BY43 Y_RNA.52-201ENST00000362760 96 ntBASIC0.06□□□□□ -2.4
CHMP4AQ9BY43 RNU6-187P-201ENST00000384139 106 ntBASIC0.06□□□□□ -2.4
CHMP4AQ9BY43 MIR6755-201ENST00000619993 66 ntBASIC0.06□□□□□ -2.4
CHMP4AQ9BY43 MIR101-2-201ENST00000362195 79 ntBASIC0.05□□□□□ -2.4
CHMP4AQ9BY43 RNA5SP257-201ENST00000363023 116 ntBASIC0.05□□□□□ -2.4
CHMP4AQ9BY43 Y_RNA.251-201ENST00000364551 99 ntBASIC0.05□□□□□ -2.4
CHMP4AQ9BY43 Y_RNA.412-201ENST00000384001 104 ntBASIC0.05□□□□□ -2.4
CHMP4AQ9BY43 Y_RNA.556-201ENST00000384677 113 ntBASIC0.05□□□□□ -2.4
CHMP4AQ9BY43 MIR1302-3-201ENST00000408128 138 ntBASIC0.05□□□□□ -2.4
CHMP4AQ9BY43 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.05□□□□□ -2.4
CHMP4AQ9BY43 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.05□□□□□ -2.4
CHMP4AQ9BY43 SNORA63.5-201ENST00000363548 123 ntBASIC0.04□□□□□ -2.4
CHMP4AQ9BY43 RNA5SP245-201ENST00000364239 121 ntBASIC0.04□□□□□ -2.4
CHMP4AQ9BY43 RNU6-690P-201ENST00000365242 106 ntBASIC0.04□□□□□ -2.4
CHMP4AQ9BY43 MIRLET7F2-201ENST00000385277 83 ntBASIC0.04□□□□□ -2.4
CHMP4AQ9BY43 PCNPP3-201ENST00000393579 471 ntBASIC0.04□□□□□ -2.4
CHMP4AQ9BY43 TUG1_4.1-201ENST00000619464 181 ntBASIC0.04□□□□□ -2.4
CHMP4AQ9BY43 MIR371B-201ENST00000638082 66 ntBASIC0.04□□□□□ -2.4
CHMP4AQ9BY43 RNA5SP214-201ENST00000363378 118 ntBASIC0.03□□□□□ -2.4
CHMP4AQ9BY43 Y_RNA.350-201ENST00000365409 98 ntBASIC0.03□□□□□ -2.4
CHMP4AQ9BY43 RNU6-1011P-201ENST00000384668 107 ntBASIC0.03□□□□□ -2.4
CHMP4AQ9BY43 AL360085.1-201ENST00000604713 532 ntBASIC0.03□□□□□ -2.4
CHMP4AQ9BY43 Y_RNA.20-201ENST00000362479 113 ntBASIC0.02□□□□□ -2.41
CHMP4AQ9BY43 Y_RNA.120-201ENST00000363304 110 ntBASIC0.02□□□□□ -2.41
CHMP4AQ9BY43 MIR760-201ENST00000390220 80 ntBASIC0.02□□□□□ -2.41
CHMP4AQ9BY43 MTCYBP9-201ENST00000431021 303 ntBASIC0.02□□□□□ -2.41
CHMP4AQ9BY43 Y_RNA.49-201ENST00000362714 112 ntBASIC0.01□□□□□ -2.41
CHMP4AQ9BY43 Y_RNA.75-201ENST00000362927 97 ntBASIC0.01□□□□□ -2.41
CHMP4AQ9BY43 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.01□□□□□ -2.41
CHMP4AQ9BY43 MIR3128-201ENST00000581957 66 ntBASIC0.01□□□□□ -2.41
CHMP4AQ9BY43 AC104408.1-201ENST00000605241 170 ntBASIC0.01□□□□□ -2.41
CHMP4AQ9BY43 Y_RNA.280-201ENST00000364765 112 ntBASIC0□□□□□ -2.41
CHMP4AQ9BY43 RNU6-1126P-201ENST00000384002 107 ntBASIC0□□□□□ -2.41
CHMP4AQ9BY43 Y_RNA.478-201ENST00000384358 107 ntBASIC0□□□□□ -2.41
CHMP4AQ9BY43 RNU6-768P-201ENST00000384683 107 ntBASIC0□□□□□ -2.41
CHMP4AQ9BY43 SNORD67.1-201ENST00000516618 108 ntBASIC0□□□□□ -2.41
CHMP4AQ9BY43 MIR4752-201ENST00000579672 72 ntBASIC0□□□□□ -2.41
CHMP4AQ9BY43 MIR5190-201ENST00000581537 80 ntBASIC0□□□□□ -2.41
CHMP4AQ9BY43 MIR548AE2-201ENST00000583456 67 ntBASIC0□□□□□ -2.41
CHMP4AQ9BY43 SNORD115-2-201ENST00000362842 82 ntBASIC-0.01□□□□□ -2.41
CHMP4AQ9BY43 SNORD114-9-201ENST00000364370 72 ntBASIC-0.01□□□□□ -2.41
CHMP4AQ9BY43 RNU6-1082P-201ENST00000364574 107 ntBASIC-0.01□□□□□ -2.41
CHMP4AQ9BY43 SNORD115-20-201ENST00000365099 82 ntBASIC-0.01□□□□□ -2.41
CHMP4AQ9BY43 RNU4-71P-201ENST00000516258 113 ntBASIC-0.01□□□□□ -2.41
CHMP4AQ9BY43 RNU7-137P-201ENST00000516788 62 ntBASIC-0.01□□□□□ -2.41
CHMP4AQ9BY43 AC138749.4-201ENST00000563970 127 ntBASIC-0.01□□□□□ -2.41
CHMP4AQ9BY43 MIR4305-201ENST00000583252 102 ntBASIC-0.01□□□□□ -2.41
CHMP4AQ9BY43 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-0.01□□□□□ -2.41
CHMP4AQ9BY43 AC105081.1-201ENST00000617727 106 ntBASIC-0.01□□□□□ -2.41
CHMP4AQ9BY43 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.02□□□□□ -2.41
CHMP4AQ9BY43 Y_RNA.119-201ENST00000363301 96 ntBASIC-0.02□□□□□ -2.41
CHMP4AQ9BY43 SNORD115-24-201ENST00000363528 82 ntBASIC-0.02□□□□□ -2.41
CHMP4AQ9BY43 RNU6-818P-201ENST00000364837 108 ntBASIC-0.02□□□□□ -2.41
CHMP4AQ9BY43 MIR568-201ENST00000385036 95 ntBASIC-0.02□□□□□ -2.41
CHMP4AQ9BY43 SNORD58.1-201ENST00000391313 66 ntBASIC-0.02□□□□□ -2.41
CHMP4AQ9BY43 MIR548L-201ENST00000408303 86 ntBASIC-0.02□□□□□ -2.41
CHMP4AQ9BY43 RNA5SP236-201ENST00000516169 116 ntBASIC-0.02□□□□□ -2.41
CHMP4AQ9BY43 Y_RNA.668-201ENST00000516233 93 ntBASIC-0.02□□□□□ -2.41
CHMP4AQ9BY43 RNU6-327P-201ENST00000516270 127 ntBASIC-0.02□□□□□ -2.41
CHMP4AQ9BY43 AC141557.1-201ENST00000540982 400 ntBASIC-0.02□□□□□ -2.41
CHMP4AQ9BY43 MIR4667-201ENST00000578933 66 ntBASIC-0.02□□□□□ -2.41
CHMP4AQ9BY43 Y_RNA.531-201ENST00000384589 121 ntBASIC-0.03□□□□□ -2.41
CHMP4AQ9BY43 MIR643-201ENST00000385267 97 ntBASIC-0.03□□□□□ -2.41
CHMP4AQ9BY43 AC062037.2-201ENST00000610137 73 ntBASIC-0.03□□□□□ -2.41
CHMP4AQ9BY43 MIR411-201ENST00000362239 96 ntBASIC-0.04□□□□□ -2.42
CHMP4AQ9BY43 Y_RNA.60-201ENST00000362831 98 ntBASIC-0.04□□□□□ -2.42
CHMP4AQ9BY43 SNORD114-5-201ENST00000362928 70 ntBASIC-0.04□□□□□ -2.42
CHMP4AQ9BY43 Y_RNA.366-201ENST00000365540 102 ntBASIC-0.04□□□□□ -2.42
CHMP4AQ9BY43 SNORA2A-201ENST00000383885 135 ntBASIC-0.04□□□□□ -2.42
CHMP4AQ9BY43 RNU6-127P-201ENST00000390897 107 ntBASIC-0.04□□□□□ -2.42
CHMP4AQ9BY43 AL118496.2-201ENST00000448300 230 ntBASIC-0.04□□□□□ -2.42
CHMP4AQ9BY43 AC107027.2-201ENST00000512197 115 ntBASIC-0.04□□□□□ -2.42
CHMP4AQ9BY43 RNU6-240P-201ENST00000516098 97 ntBASIC-0.04□□□□□ -2.42
CHMP4AQ9BY43 RNU2-35P-201ENST00000516446 142 ntBASIC-0.04□□□□□ -2.42
CHMP4AQ9BY43 MIR4743-201ENST00000584576 69 ntBASIC-0.04□□□□□ -2.42
CHMP4AQ9BY43 AL359881.1-201ENST00000602916 267 ntBASIC-0.04□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms