Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU6-690P-201ENST00000365242 106 ntBASIC0.54□□□□□ -2.32
CCDC3Q9BQI4 SNORD37.2-201ENST00000391075 66 ntBASIC0.54□□□□□ -2.32
CCDC3Q9BQI4 RNU6-733P-201ENST00000410759 104 ntBASIC0.54□□□□□ -2.32
CCDC3Q9BQI4 RNU7-113P-201ENST00000459273 62 ntBASIC0.54□□□□□ -2.32
CCDC3Q9BQI4 RN7SKP12-201ENST00000516275 143 ntBASIC0.54□□□□□ -2.32
CCDC3Q9BQI4 RNU6-448P-201ENST00000517052 107 ntBASIC0.54□□□□□ -2.32
CCDC3Q9BQI4 AC008608.1-201ENST00000603910 127 ntBASIC0.54□□□□□ -2.32
CCDC3Q9BQI4 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 AL589743.1-201ENST00000551932 2712 ntBASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 Y_RNA.171-201ENST00000363760 102 ntBASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 Y_RNA.531-201ENST00000384589 121 ntBASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 RNU6-1237P-201ENST00000384777 107 ntBASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 Y_RNA.588-201ENST00000391254 102 ntBASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 RNU4-83P-201ENST00000410863 133 ntBASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 RNA5SP222-201ENST00000411039 105 ntBASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 AC112693.2-201ENST00000556538 232 ntBASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 FTX_2.1-201ENST00000618816 94 ntBASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 MIR5087-201ENST00000635826 76 ntBASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 MIR3658-201ENST00000636291 56 ntBASIC0.53□□□□□ -2.32
CCDC3Q9BQI4 MIR140-201ENST00000385282 100 ntBASIC0.52□□□□□ -2.33
CCDC3Q9BQI4 RPL39P25-201ENST00000449384 154 ntBASIC0.52□□□□□ -2.33
CCDC3Q9BQI4 Y_RNA.651-201ENST00000459380 103 ntBASIC0.52□□□□□ -2.33
CCDC3Q9BQI4 RNU7-79P-201ENST00000516082 62 ntBASIC0.52□□□□□ -2.33
CCDC3Q9BQI4 RNU6-1194P-201ENST00000516208 104 ntBASIC0.52□□□□□ -2.33
CCDC3Q9BQI4 RNU4-54P-201ENST00000516428 129 ntBASIC0.52□□□□□ -2.33
CCDC3Q9BQI4 AC133485.4-201ENST00000561835 220 ntBASIC0.52□□□□□ -2.33
CCDC3Q9BQI4 AC138907.4-201ENST00000570107 226 ntBASIC0.52□□□□□ -2.33
CCDC3Q9BQI4 MIR6082-201ENST00000613604 109 ntBASIC0.52□□□□□ -2.33
CCDC3Q9BQI4 Y_RNA.778-201ENST00000620203 90 ntBASIC0.52□□□□□ -2.33
CCDC3Q9BQI4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.51□□□□□ -2.33
CCDC3Q9BQI4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.51□□□□□ -2.33
CCDC3Q9BQI4 Y_RNA.299-201ENST00000364973 94 ntBASIC0.51□□□□□ -2.33
CCDC3Q9BQI4 RNU6-449P-201ENST00000383914 107 ntBASIC0.51□□□□□ -2.33
CCDC3Q9BQI4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.51□□□□□ -2.33
CCDC3Q9BQI4 RNU7-197P-201ENST00000458836 62 ntBASIC0.51□□□□□ -2.33
CCDC3Q9BQI4 RNA5SP121-201ENST00000516537 101 ntBASIC0.51□□□□□ -2.33
CCDC3Q9BQI4 MIR4491-201ENST00000581087 68 ntBASIC0.51□□□□□ -2.33
CCDC3Q9BQI4 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.51□□□□□ -2.33
CCDC3Q9BQI4 Y_RNA.470-201ENST00000384307 117 ntBASIC0.5□□□□□ -2.33
CCDC3Q9BQI4 RNU2-35P-201ENST00000516446 142 ntBASIC0.5□□□□□ -2.33
CCDC3Q9BQI4 RNA5SP33-201ENST00000516687 98 ntBASIC0.5□□□□□ -2.33
CCDC3Q9BQI4 RNA5SP117-201ENST00000365294 118 ntBASIC0.49□□□□□ -2.33
CCDC3Q9BQI4 RNU6-886P-201ENST00000384319 105 ntBASIC0.49□□□□□ -2.33
CCDC3Q9BQI4 PCNPP3-201ENST00000393579 471 ntBASIC0.49□□□□□ -2.33
CCDC3Q9BQI4 AL512326.2-201ENST00000426359 151 ntBASIC0.49□□□□□ -2.33
CCDC3Q9BQI4 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.49□□□□□ -2.33
CCDC3Q9BQI4 AC074198.2-201ENST00000508153 258 ntBASIC0.49□□□□□ -2.33
CCDC3Q9BQI4 RNU6-240P-201ENST00000516098 97 ntBASIC0.49□□□□□ -2.33
CCDC3Q9BQI4 Y_RNA.690-201ENST00000516603 95 ntBASIC0.49□□□□□ -2.33
CCDC3Q9BQI4 AC021443.1-201ENST00000604478 211 ntBASIC0.49□□□□□ -2.33
CCDC3Q9BQI4 AC098479.1-201ENST00000609225 154 ntBASIC0.49□□□□□ -2.33
CCDC3Q9BQI4 SNORD114-10-201ENST00000363409 72 ntBASIC0.48□□□□□ -2.33
CCDC3Q9BQI4 SNORD18A-201ENST00000363753 72 ntBASIC0.48□□□□□ -2.33
CCDC3Q9BQI4 RNY1P11-201ENST00000363759 113 ntBASIC0.48□□□□□ -2.33
CCDC3Q9BQI4 Y_RNA.174-201ENST00000363781 105 ntBASIC0.48□□□□□ -2.33
CCDC3Q9BQI4 AC114737.2-201ENST00000421583 173 ntBASIC0.48□□□□□ -2.33
CCDC3Q9BQI4 RNU6-135P-201ENST00000516769 101 ntBASIC0.48□□□□□ -2.33
CCDC3Q9BQI4 AP001340.1-201ENST00000624405 217 ntBASIC0.48□□□□□ -2.33
CCDC3Q9BQI4 MIR924-201ENST00000638017 53 ntBASIC0.48□□□□□ -2.33
CCDC3Q9BQI4 Y_RNA.13-201ENST00000362403 112 ntBASIC0.47□□□□□ -2.33
CCDC3Q9BQI4 RNU6-309P-201ENST00000364573 106 ntBASIC0.47□□□□□ -2.33
CCDC3Q9BQI4 Y_RNA.298-201ENST00000364960 107 ntBASIC0.47□□□□□ -2.33
CCDC3Q9BQI4 RNU4-11P-201ENST00000365287 132 ntBASIC0.47□□□□□ -2.33
CCDC3Q9BQI4 RNU6-945P-201ENST00000383947 107 ntBASIC0.47□□□□□ -2.33
CCDC3Q9BQI4 RNY1P8-201ENST00000383970 114 ntBASIC0.47□□□□□ -2.33
CCDC3Q9BQI4 SNORA36.2-201ENST00000384004 127 ntBASIC0.47□□□□□ -2.33
CCDC3Q9BQI4 RNU7-164P-201ENST00000459221 62 ntBASIC0.47□□□□□ -2.33
CCDC3Q9BQI4 MIR3121-201ENST00000579680 77 ntBASIC0.47□□□□□ -2.33
CCDC3Q9BQI4 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
CCDC3Q9BQI4 Y_RNA.555-201ENST00000384673 110 ntBASIC0.46□□□□□ -2.34
CCDC3Q9BQI4 RNU4-69P-201ENST00000410677 143 ntBASIC0.46□□□□□ -2.34
CCDC3Q9BQI4 Y_RNA.686-201ENST00000516548 134 ntBASIC0.46□□□□□ -2.34
CCDC3Q9BQI4 MIR3144-201ENST00000579460 79 ntBASIC0.46□□□□□ -2.34
CCDC3Q9BQI4 MIR548AE2-201ENST00000583456 67 ntBASIC0.46□□□□□ -2.34
CCDC3Q9BQI4 AC243829.6-201ENST00000612652 106 ntBASIC0.46□□□□□ -2.34
CCDC3Q9BQI4 RNU6-403P-201ENST00000363163 104 ntBASIC0.45□□□□□ -2.34
CCDC3Q9BQI4 RNU6-151P-201ENST00000364158 107 ntBASIC0.45□□□□□ -2.34
CCDC3Q9BQI4 Y_RNA.270-201ENST00000364693 104 ntBASIC0.45□□□□□ -2.34
CCDC3Q9BQI4 RNU7-123P-201ENST00000515911 60 ntBASIC0.45□□□□□ -2.34
CCDC3Q9BQI4 Y_RNA.692-201ENST00000516627 105 ntBASIC0.45□□□□□ -2.34
CCDC3Q9BQI4 RNU7-137P-201ENST00000516788 62 ntBASIC0.45□□□□□ -2.34
CCDC3Q9BQI4 MIR3678-201ENST00000578455 94 ntBASIC0.45□□□□□ -2.34
CCDC3Q9BQI4 uc_338.16-201ENST00000621804 95 ntBASIC0.45□□□□□ -2.34
CCDC3Q9BQI4 Y_RNA.400-201ENST00000383963 111 ntBASIC0.44□□□□□ -2.34
CCDC3Q9BQI4 Y_RNA.464-201ENST00000384282 110 ntBASIC0.44□□□□□ -2.34
CCDC3Q9BQI4 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.44□□□□□ -2.34
CCDC3Q9BQI4 MIR513C-201ENST00000401352 84 ntBASIC0.44□□□□□ -2.34
CCDC3Q9BQI4 AL157398.1-201ENST00000452981 186 ntBASIC0.44□□□□□ -2.34
CCDC3Q9BQI4 RNA5SP330-201ENST00000517096 96 ntBASIC0.44□□□□□ -2.34
CCDC3Q9BQI4 MIR548X2-201ENST00000579776 100 ntBASIC0.44□□□□□ -2.34
CCDC3Q9BQI4 AL137067.1-201ENST00000615933 120 ntBASIC0.44□□□□□ -2.34
CCDC3Q9BQI4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.44□□□□□ -2.34
CCDC3Q9BQI4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.44□□□□□ -2.34
CCDC3Q9BQI4 RNU4-58P-201ENST00000363192 141 ntBASIC0.43□□□□□ -2.34
CCDC3Q9BQI4 Y_RNA.115-201ENST00000363272 98 ntBASIC0.43□□□□□ -2.34
CCDC3Q9BQI4 Y_RNA.180-201ENST00000363867 113 ntBASIC0.43□□□□□ -2.34
CCDC3Q9BQI4 Y_RNA.258-201ENST00000364613 105 ntBASIC0.43□□□□□ -2.34
CCDC3Q9BQI4 RNY1P2-201ENST00000364820 117 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 168.1 ms