Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-735P-201ENST00000410612 107 ntBASIC0.72□□□□□ -2.29
USP28Q96RU2 Y_RNA.617-201ENST00000410920 90 ntBASIC0.72□□□□□ -2.29
USP28Q96RU2 RNU6-893P-201ENST00000458841 100 ntBASIC0.72□□□□□ -2.29
USP28Q96RU2 U7.7-201ENST00000459276 60 ntBASIC0.72□□□□□ -2.29
USP28Q96RU2 RNU6-977P-201ENST00000516411 103 ntBASIC0.72□□□□□ -2.29
USP28Q96RU2 RNU6-1110P-201ENST00000516462 101 ntBASIC0.72□□□□□ -2.29
USP28Q96RU2 Y_RNA.191-201ENST00000363972 113 ntBASIC0.71□□□□□ -2.3
USP28Q96RU2 Y_RNA.218-201ENST00000364218 104 ntBASIC0.71□□□□□ -2.3
USP28Q96RU2 RNU6-949P-201ENST00000384040 107 ntBASIC0.71□□□□□ -2.3
USP28Q96RU2 MIR520H-201ENST00000385126 88 ntBASIC0.71□□□□□ -2.3
USP28Q96RU2 MIR125B2-201ENST00000385128 89 ntBASIC0.71□□□□□ -2.3
USP28Q96RU2 MIR1257-201ENST00000408490 117 ntBASIC0.71□□□□□ -2.3
USP28Q96RU2 SNORD93-201ENST00000408813 74 ntBASIC0.71□□□□□ -2.3
USP28Q96RU2 Y_RNA.630-201ENST00000411370 108 ntBASIC0.71□□□□□ -2.3
USP28Q96RU2 RNU7-56P-201ENST00000458744 62 ntBASIC0.71□□□□□ -2.3
USP28Q96RU2 RNU7-107P-201ENST00000459121 61 ntBASIC0.71□□□□□ -2.3
USP28Q96RU2 SNORD67.1-201ENST00000516618 108 ntBASIC0.71□□□□□ -2.3
USP28Q96RU2 RNU6-1234P-201ENST00000516877 103 ntBASIC0.71□□□□□ -2.3
USP28Q96RU2 MIR6504-201ENST00000613520 61 ntBASIC0.71□□□□□ -2.3
USP28Q96RU2 RNU6-647P-201ENST00000364243 107 ntBASIC0.7□□□□□ -2.3
USP28Q96RU2 MIR508-201ENST00000384857 115 ntBASIC0.7□□□□□ -2.3
USP28Q96RU2 SNORD105-201ENST00000386910 85 ntBASIC0.7□□□□□ -2.3
USP28Q96RU2 Y_RNA.588-201ENST00000391254 102 ntBASIC0.7□□□□□ -2.3
USP28Q96RU2 MIR1276-201ENST00000408707 83 ntBASIC0.7□□□□□ -2.3
USP28Q96RU2 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.7□□□□□ -2.3
USP28Q96RU2 AC105081.1-201ENST00000617727 106 ntBASIC0.7□□□□□ -2.3
USP28Q96RU2 TUG1_4.1-201ENST00000619464 181 ntBASIC0.7□□□□□ -2.3
USP28Q96RU2 RNU6-704P-201ENST00000364162 103 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 SNORD58C-201ENST00000365223 64 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 RNU6-1307P-201ENST00000391012 103 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 MIR938-201ENST00000401216 83 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 MIR548M-201ENST00000408260 86 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 RNU4-69P-201ENST00000410677 143 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 RNU7-102P-201ENST00000458948 62 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 RNU6-772P-201ENST00000516042 105 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 RNU7-137P-201ENST00000516788 62 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 RNU7-156P-201ENST00000517214 74 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 MIR4491-201ENST00000581087 68 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 AL078603.1-201ENST00000603824 313 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 AL353765.1-201ENST00000605514 183 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 MIR8066-201ENST00000617280 78 ntBASIC0.69□□□□□ -2.3
USP28Q96RU2 MIR613-201ENST00000385248 95 ntBASIC0.68□□□□□ -2.3
USP28Q96RU2 RNU4-83P-201ENST00000410863 133 ntBASIC0.68□□□□□ -2.3
USP28Q96RU2 AC244098.3-201ENST00000424803 96 ntBASIC0.68□□□□□ -2.3
USP28Q96RU2 RPL39P25-201ENST00000449384 154 ntBASIC0.68□□□□□ -2.3
USP28Q96RU2 RNU6-1061P-201ENST00000516530 99 ntBASIC0.68□□□□□ -2.3
USP28Q96RU2 SNORA25.16-201ENST00000516741 121 ntBASIC0.68□□□□□ -2.3
USP28Q96RU2 CYP3A137P-201ENST00000562436 69 ntBASIC0.68□□□□□ -2.3
USP28Q96RU2 AC011195.1-201ENST00000578177 177 ntBASIC0.68□□□□□ -2.3
USP28Q96RU2 MIR4452-201ENST00000583004 71 ntBASIC0.68□□□□□ -2.3
USP28Q96RU2 AL590095.2-201ENST00000604136 117 ntBASIC0.68□□□□□ -2.3
USP28Q96RU2 Y_RNA.13-201ENST00000362403 112 ntBASIC0.67□□□□□ -2.3
USP28Q96RU2 Y_RNA.42-201ENST00000362660 108 ntBASIC0.67□□□□□ -2.3
USP28Q96RU2 RNU6-403P-201ENST00000363163 104 ntBASIC0.67□□□□□ -2.3
USP28Q96RU2 SNORD50.2-201ENST00000365465 70 ntBASIC0.67□□□□□ -2.3
USP28Q96RU2 RNY1P8-201ENST00000383970 114 ntBASIC0.67□□□□□ -2.3
USP28Q96RU2 Y_RNA.528-201ENST00000384575 108 ntBASIC0.67□□□□□ -2.3
USP28Q96RU2 MIR520E-201ENST00000384867 87 ntBASIC0.67□□□□□ -2.3
USP28Q96RU2 MIRLET7F2-201ENST00000385277 83 ntBASIC0.67□□□□□ -2.3
USP28Q96RU2 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.67□□□□□ -2.3
USP28Q96RU2 SNORD92-201ENST00000585078 85 ntBASIC0.67□□□□□ -2.3
USP28Q96RU2 Y_RNA.773-201ENST00000607168 90 ntBASIC0.67□□□□□ -2.3
USP28Q96RU2 AL136317.1-201ENST00000612653 226 ntBASIC0.67□□□□□ -2.3
USP28Q96RU2 AC087741.2-201ENST00000619415 172 ntBASIC0.67□□□□□ -2.3
USP28Q96RU2 SNORD114-22-201ENST00000365423 72 ntBASIC0.66□□□□□ -2.3
USP28Q96RU2 RNU6-616P-201ENST00000384353 107 ntBASIC0.66□□□□□ -2.3
USP28Q96RU2 RNU6-364P-201ENST00000384387 107 ntBASIC0.66□□□□□ -2.3
USP28Q96RU2 RNU6-110P-201ENST00000384508 104 ntBASIC0.66□□□□□ -2.3
USP28Q96RU2 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
USP28Q96RU2 RNU7-6P-201ENST00000516845 62 ntBASIC0.66□□□□□ -2.3
USP28Q96RU2 AC025627.3-201ENST00000582078 182 ntBASIC0.66□□□□□ -2.3
USP28Q96RU2 Y_RNA.71-201ENST00000362892 104 ntBASIC0.65□□□□□ -2.31
USP28Q96RU2 SNORA72.6-201ENST00000384520 129 ntBASIC0.65□□□□□ -2.31
USP28Q96RU2 MIR206-201ENST00000384872 86 ntBASIC0.65□□□□□ -2.31
USP28Q96RU2 MIR92A1-201ENST00000385233 78 ntBASIC0.65□□□□□ -2.31
USP28Q96RU2 RNU6-1321P-201ENST00000390905 107 ntBASIC0.65□□□□□ -2.31
USP28Q96RU2 RNU1-119P-201ENST00000391122 165 ntBASIC0.65□□□□□ -2.31
USP28Q96RU2 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.65□□□□□ -2.31
USP28Q96RU2 AC138749.4-201ENST00000563970 127 ntBASIC0.65□□□□□ -2.31
USP28Q96RU2 AC025166.1-201ENST00000612411 163 ntBASIC0.65□□□□□ -2.31
USP28Q96RU2 U6.109-201ENST00000636749 87 ntBASIC0.65□□□□□ -2.31
USP28Q96RU2 RNA5SP133-201ENST00000363368 119 ntBASIC0.64□□□□□ -2.31
USP28Q96RU2 Y_RNA.198-201ENST00000364013 98 ntBASIC0.64□□□□□ -2.31
USP28Q96RU2 MIR573-201ENST00000384964 99 ntBASIC0.64□□□□□ -2.31
USP28Q96RU2 RNU6-733P-201ENST00000410759 104 ntBASIC0.64□□□□□ -2.31
USP28Q96RU2 AC133485.1-201ENST00000567176 124 ntBASIC0.64□□□□□ -2.31
USP28Q96RU2 AC138907.6-201ENST00000568401 126 ntBASIC0.64□□□□□ -2.31
USP28Q96RU2 MIR6082-201ENST00000613604 109 ntBASIC0.64□□□□□ -2.31
USP28Q96RU2 MIR6734-201ENST00000621166 68 ntBASIC0.64□□□□□ -2.31
USP28Q96RU2 MIR1255B1-201ENST00000636325 63 ntBASIC0.64□□□□□ -2.31
USP28Q96RU2 MTND5P18-201ENST00000445624 1801 ntBASIC0.64□□□□□ -2.31
USP28Q96RU2 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.63□□□□□ -2.31
USP28Q96RU2 Y_RNA.299-201ENST00000364973 94 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 MIR539-201ENST00000365690 78 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
USP28Q96RU2 RNU6-447P-201ENST00000410293 104 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 RNU6-1118P-201ENST00000410382 104 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 RNU6-1076P-201ENST00000410397 104 ntBASIC0.63□□□□□ -2.31
USP28Q96RU2 RNU6-355P-201ENST00000410427 104 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms