Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 RNA5SP144-201ENST00000410846 116 ntBASIC-0.85□□□□□ -2.55
CCDC112Q8NEF3 AC097635.1-201ENST00000450678 155 ntBASIC-0.85□□□□□ -2.55
CCDC112Q8NEF3 RNU6-453P-201ENST00000516819 85 ntBASIC-0.85□□□□□ -2.55
CCDC112Q8NEF3 MIR548AX-201ENST00000580117 73 ntBASIC-0.85□□□□□ -2.55
CCDC112Q8NEF3 AC112487.2-201ENST00000637950 304 ntBASIC-0.85□□□□□ -2.55
CCDC112Q8NEF3 SNORA25.1-201ENST00000362326 128 ntBASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 Y_RNA.105-201ENST00000363182 111 ntBASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 Y_RNA.199-201ENST00000364014 102 ntBASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 snoU2_19.4-201ENST00000364329 80 ntBASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 Y_RNA.541-201ENST00000384640 113 ntBASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 SNORD116-4-201ENST00000384733 96 ntBASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 MIR181B2-201ENST00000385004 89 ntBASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 MT-TQ-201ENST00000387372 72 ntBASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 MIR1302-11-201ENST00000408051 138 ntBASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 MIR1302-9-201ENST00000408365 138 ntBASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 MIR1302-10-201ENST00000408734 138 ntBASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 RNA5SP66-201ENST00000517178 101 ntBASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 MIR1302-2-201ENST00000607096 138 ntBASIC-0.86□□□□□ -2.55
CCDC112Q8NEF3 UBE2WP1-201ENST00000362030 340 ntBASIC-0.87□□□□□ -2.55
CCDC112Q8NEF3 RNU4-84P-201ENST00000364200 139 ntBASIC-0.87□□□□□ -2.55
CCDC112Q8NEF3 SNORA32-201ENST00000384072 121 ntBASIC-0.87□□□□□ -2.55
CCDC112Q8NEF3 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.87□□□□□ -2.55
CCDC112Q8NEF3 AL603914.1-201ENST00000401964 204 ntBASIC-0.87□□□□□ -2.55
CCDC112Q8NEF3 RNU6-121P-201ENST00000410525 99 ntBASIC-0.87□□□□□ -2.55
CCDC112Q8NEF3 RNU7-113P-201ENST00000459273 62 ntBASIC-0.87□□□□□ -2.55
CCDC112Q8NEF3 RNU6-138P-201ENST00000515952 107 ntBASIC-0.87□□□□□ -2.55
CCDC112Q8NEF3 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.87□□□□□ -2.55
CCDC112Q8NEF3 RNA5SP33-201ENST00000516687 98 ntBASIC-0.87□□□□□ -2.55
CCDC112Q8NEF3 AC006504.6-201ENST00000590142 199 ntBASIC-0.87□□□□□ -2.55
CCDC112Q8NEF3 Y_RNA.154-201ENST00000363624 102 ntBASIC-0.88□□□□□ -2.55
CCDC112Q8NEF3 MIR616-201ENST00000385293 97 ntBASIC-0.88□□□□□ -2.55
CCDC112Q8NEF3 RNU6-876P-201ENST00000391295 104 ntBASIC-0.88□□□□□ -2.55
CCDC112Q8NEF3 RNU7-74P-201ENST00000459104 62 ntBASIC-0.88□□□□□ -2.55
CCDC112Q8NEF3 MIR4473-201ENST00000583731 91 ntBASIC-0.88□□□□□ -2.55
CCDC112Q8NEF3 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-0.88□□□□□ -2.55
CCDC112Q8NEF3 uc_338.10-201ENST00000621872 182 ntBASIC-0.88□□□□□ -2.55
CCDC112Q8NEF3 SNORD114-14-201ENST00000362723 75 ntBASIC-0.89□□□□□ -2.55
CCDC112Q8NEF3 snoU2_19.2-201ENST00000363024 80 ntBASIC-0.89□□□□□ -2.55
CCDC112Q8NEF3 Y_RNA.120-201ENST00000363304 110 ntBASIC-0.89□□□□□ -2.55
CCDC112Q8NEF3 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.89□□□□□ -2.55
CCDC112Q8NEF3 AC082651.2-201ENST00000496833 166 ntBASIC-0.89□□□□□ -2.55
CCDC112Q8NEF3 RNU6-976P-201ENST00000516086 111 ntBASIC-0.89□□□□□ -2.55
CCDC112Q8NEF3 RNU6-561P-201ENST00000516222 102 ntBASIC-0.89□□□□□ -2.55
CCDC112Q8NEF3 RNU6-175P-201ENST00000516896 107 ntBASIC-0.89□□□□□ -2.55
CCDC112Q8NEF3 MTND5P40-201ENST00000559945 246 ntBASIC-0.89□□□□□ -2.55
CCDC112Q8NEF3 Y_RNA.318-201ENST00000365131 97 ntBASIC-0.9□□□□□ -2.55
CCDC112Q8NEF3 SNORA63.7-201ENST00000365579 123 ntBASIC-0.9□□□□□ -2.55
CCDC112Q8NEF3 MIR519A1-201ENST00000385257 85 ntBASIC-0.9□□□□□ -2.55
CCDC112Q8NEF3 AC093423.1-201ENST00000440817 142 ntBASIC-0.9□□□□□ -2.55
CCDC112Q8NEF3 RNU7-13P-201ENST00000516413 62 ntBASIC-0.9□□□□□ -2.55
CCDC112Q8NEF3 RNU6-1149P-201ENST00000516810 97 ntBASIC-0.9□□□□□ -2.55
CCDC112Q8NEF3 IGKV1-22-201ENST00000524313 326 ntBASIC-0.9□□□□□ -2.55
CCDC112Q8NEF3 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-0.9□□□□□ -2.55
CCDC112Q8NEF3 AC069503.3-201ENST00000618674 145 ntBASIC-0.9□□□□□ -2.55
CCDC112Q8NEF3 MIR409-201ENST00000362237 79 ntBASIC-0.91□□□□□ -2.56
CCDC112Q8NEF3 Y_RNA.176-201ENST00000363815 109 ntBASIC-0.91□□□□□ -2.56
CCDC112Q8NEF3 Y_RNA.384-201ENST00000383909 102 ntBASIC-0.91□□□□□ -2.56
CCDC112Q8NEF3 RNY1P6-201ENST00000384193 109 ntBASIC-0.91□□□□□ -2.56
CCDC112Q8NEF3 RNU6-570P-201ENST00000517051 105 ntBASIC-0.91□□□□□ -2.56
CCDC112Q8NEF3 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-0.91□□□□□ -2.56
CCDC112Q8NEF3 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.91□□□□□ -2.56
CCDC112Q8NEF3 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.91□□□□□ -2.56
CCDC112Q8NEF3 MIR548AE2-201ENST00000583456 67 ntBASIC-0.91□□□□□ -2.56
CCDC112Q8NEF3 MIR4436A-201ENST00000585278 85 ntBASIC-0.91□□□□□ -2.56
CCDC112Q8NEF3 AC037487.3-201ENST00000606668 112 ntBASIC-0.91□□□□□ -2.56
CCDC112Q8NEF3 AC090574.1-201ENST00000623186 233 ntBASIC-0.91□□□□□ -2.56
CCDC112Q8NEF3 RNU6-455P-201ENST00000384681 107 ntBASIC-0.92□□□□□ -2.56
CCDC112Q8NEF3 RNU6-735P-201ENST00000410612 107 ntBASIC-0.92□□□□□ -2.56
CCDC112Q8NEF3 Y_RNA.632-201ENST00000459189 102 ntBASIC-0.92□□□□□ -2.56
CCDC112Q8NEF3 MIR4500-201ENST00000579472 76 ntBASIC-0.92□□□□□ -2.56
CCDC112Q8NEF3 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-0.92□□□□□ -2.56
CCDC112Q8NEF3 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.93□□□□□ -2.56
CCDC112Q8NEF3 SNORD114-29-201ENST00000364819 70 ntBASIC-0.93□□□□□ -2.56
CCDC112Q8NEF3 MIR539-201ENST00000365690 78 ntBASIC-0.93□□□□□ -2.56
CCDC112Q8NEF3 RNU6-1336P-201ENST00000383886 109 ntBASIC-0.93□□□□□ -2.56
CCDC112Q8NEF3 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.93□□□□□ -2.56
CCDC112Q8NEF3 SNORA3B-201ENST00000391305 131 ntBASIC-0.93□□□□□ -2.56
CCDC112Q8NEF3 MIR548I2-201ENST00000408348 149 ntBASIC-0.93□□□□□ -2.56
CCDC112Q8NEF3 RNU7-195P-201ENST00000458793 62 ntBASIC-0.93□□□□□ -2.56
CCDC112Q8NEF3 MIR1270-201ENST00000459320 83 ntBASIC-0.93□□□□□ -2.56
CCDC112Q8NEF3 RNA5SP169-201ENST00000517268 117 ntBASIC-0.93□□□□□ -2.56
CCDC112Q8NEF3 YWHAEP2-201ENST00000580066 112 ntBASIC-0.93□□□□□ -2.56
CCDC112Q8NEF3 MIR548AG2-201ENST00000581228 64 ntBASIC-0.93□□□□□ -2.56
CCDC112Q8NEF3 MIR1302-1-201ENST00000637932 143 ntBASIC-0.93□□□□□ -2.56
CCDC112Q8NEF3 Y_RNA.31-201ENST00000362574 102 ntBASIC-0.94□□□□□ -2.56
CCDC112Q8NEF3 RNU6-978P-201ENST00000364371 103 ntBASIC-0.94□□□□□ -2.56
CCDC112Q8NEF3 RNU6-47P-201ENST00000383866 107 ntBASIC-0.94□□□□□ -2.56
CCDC112Q8NEF3 RNU6-1289P-201ENST00000384431 106 ntBASIC-0.94□□□□□ -2.56
CCDC112Q8NEF3 MIR9-2-201ENST00000384838 87 ntBASIC-0.94□□□□□ -2.56
CCDC112Q8NEF3 MIR519E-201ENST00000385075 84 ntBASIC-0.94□□□□□ -2.56
CCDC112Q8NEF3 RNU4-43P-201ENST00000410628 137 ntBASIC-0.94□□□□□ -2.56
CCDC112Q8NEF3 SNORD19B-201ENST00000459623 84 ntBASIC-0.94□□□□□ -2.56
CCDC112Q8NEF3 Y_RNA.809-201ENST00000516058 95 ntBASIC-0.94□□□□□ -2.56
CCDC112Q8NEF3 MIR3681-201ENST00000580089 72 ntBASIC-0.94□□□□□ -2.56
CCDC112Q8NEF3 MIR548AE1-201ENST00000583292 70 ntBASIC-0.94□□□□□ -2.56
CCDC112Q8NEF3 AL132765.2-201ENST00000610812 351 ntBASIC-0.94□□□□□ -2.56
CCDC112Q8NEF3 AC093726.3-201ENST00000637588 150 ntBASIC-0.94□□□□□ -2.56
CCDC112Q8NEF3 MIR624-201ENST00000385217 97 ntBASIC-0.95□□□□□ -2.56
CCDC112Q8NEF3 SNORA79-201ENST00000408376 140 ntBASIC-0.95□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 187.1 ms