Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SNORD114-23-201ENST00000363536 72 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 RNU6-934P-201ENST00000365154 107 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 RNU6-690P-201ENST00000365242 106 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 SNORA18-201ENST00000384416 132 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 RNU6-1104P-201ENST00000384723 104 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 U8.15-201ENST00000390947 134 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 RNA5SP261-201ENST00000410536 106 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 MIR18B-201ENST00000454574 71 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 RNU7-123P-201ENST00000515911 60 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 AC022523.2-201ENST00000561045 150 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 AC141846.1-201ENST00000568348 142 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 MIR4804-201ENST00000581683 73 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 MIR4676-201ENST00000583078 72 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 MIR4305-201ENST00000583252 102 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 AC008608.1-201ENST00000603910 127 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 AP001340.1-201ENST00000624405 217 ntBASIC0.51□□□□□ -2.33
ZNF540Q8NDQ6 RNY1P13-201ENST00000365030 105 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 MT-TF-201ENST00000387314 71 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 Y_RNA.588-201ENST00000391254 102 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 AC244098.3-201ENST00000424803 96 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 AL157398.1-201ENST00000452981 186 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 RNU7-56P-201ENST00000458744 62 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 RNU7-185P-201ENST00000459215 60 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 RNU7-70P-201ENST00000516941 66 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 RNU7-35P-201ENST00000517174 62 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 MIR548AE2-201ENST00000583456 67 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 AL359881.1-201ENST00000602916 267 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 MIR8066-201ENST00000617280 78 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 AC010487.4-201ENST00000637027 61 ntBASIC0.5□□□□□ -2.33
ZNF540Q8NDQ6 Y_RNA.298-201ENST00000364960 107 ntBASIC0.49□□□□□ -2.33
ZNF540Q8NDQ6 Y_RNA.531-201ENST00000384589 121 ntBASIC0.49□□□□□ -2.33
ZNF540Q8NDQ6 RNU6-1237P-201ENST00000384777 107 ntBASIC0.49□□□□□ -2.33
ZNF540Q8NDQ6 MIR193B-201ENST00000384907 83 ntBASIC0.49□□□□□ -2.33
ZNF540Q8NDQ6 MTND4LP9-201ENST00000427694 174 ntBASIC0.49□□□□□ -2.33
ZNF540Q8NDQ6 AC092628.1-201ENST00000436250 252 ntBASIC0.49□□□□□ -2.33
ZNF540Q8NDQ6 RN7SKP12-201ENST00000516275 143 ntBASIC0.49□□□□□ -2.33
ZNF540Q8NDQ6 MIR3152-201ENST00000579801 74 ntBASIC0.49□□□□□ -2.33
ZNF540Q8NDQ6 AC021443.1-201ENST00000604478 211 ntBASIC0.49□□□□□ -2.33
ZNF540Q8NDQ6 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.49□□□□□ -2.33
ZNF540Q8NDQ6 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.49□□□□□ -2.33
ZNF540Q8NDQ6 AL589743.1-201ENST00000551932 2712 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 Y_RNA.42-201ENST00000362660 108 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 Y_RNA.114-201ENST00000363265 113 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 RNY1P8-201ENST00000383970 114 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 RNU6-949P-201ENST00000384040 107 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 Y_RNA.568-201ENST00000384742 113 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 MIR125B2-201ENST00000385128 89 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 SNORD105-201ENST00000386910 85 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 RNU6-1307P-201ENST00000391012 103 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 RNU6-257P-201ENST00000410238 98 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 Y_RNA.617-201ENST00000410920 90 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 MTATP6P21-201ENST00000440681 189 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 RNU7-164P-201ENST00000459221 62 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 RNY4P20-201ENST00000516678 93 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 AC133485.4-201ENST00000561835 220 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 AC138907.4-201ENST00000570107 226 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 MIR6779-201ENST00000617283 64 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 AC243829.3-201ENST00000622177 108 ntBASIC0.48□□□□□ -2.33
ZNF540Q8NDQ6 SNORA32-201ENST00000384072 121 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 Y_RNA.488-201ENST00000384403 102 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 MIRLET7F2-201ENST00000385277 83 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 MIR513C-201ENST00000401352 84 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 RNU6-1086P-201ENST00000410930 100 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 RNU7-113P-201ENST00000459273 62 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 RNU6-781P-201ENST00000516377 101 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 AP001328.1-201ENST00000528550 176 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 MIR1273G-201ENST00000577677 100 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 AC011195.1-201ENST00000578177 177 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 MIR4711-201ENST00000578274 70 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 SNORD92-201ENST00000585078 85 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 AL137067.1-201ENST00000615933 120 ntBASIC0.47□□□□□ -2.33
ZNF540Q8NDQ6 MIR1-1-201ENST00000362147 71 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 RNU6-774P-201ENST00000363238 107 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 RNU6-1062P-201ENST00000383908 107 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 RNU6-187P-201ENST00000384139 106 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 MIR520F-201ENST00000384824 87 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 MIR573-201ENST00000384964 99 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 MIR520H-201ENST00000385126 88 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 RNU6-735P-201ENST00000410612 107 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 AL022718.1-201ENST00000412004 84 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 AL158147.1-201ENST00000443970 75 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 RNU7-102P-201ENST00000458948 62 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 RNU7-79P-201ENST00000516082 62 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 RNA5SP33-201ENST00000516687 98 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 RNU7-137P-201ENST00000516788 62 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 U7.2-201ENST00000607576 63 ntBASIC0.46□□□□□ -2.34
ZNF540Q8NDQ6 Y_RNA.205-201ENST00000364128 113 ntBASIC0.45□□□□□ -2.34
ZNF540Q8NDQ6 SNORA50A-201ENST00000384225 134 ntBASIC0.45□□□□□ -2.34
ZNF540Q8NDQ6 Y_RNA.586-201ENST00000391146 98 ntBASIC0.45□□□□□ -2.34
ZNF540Q8NDQ6 MIR938-201ENST00000401216 83 ntBASIC0.45□□□□□ -2.34
ZNF540Q8NDQ6 MIR1257-201ENST00000408490 117 ntBASIC0.45□□□□□ -2.34
ZNF540Q8NDQ6 RNA5SP222-201ENST00000411039 105 ntBASIC0.45□□□□□ -2.34
ZNF540Q8NDQ6 RN7SKP19-201ENST00000516016 252 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 182.2 ms