Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MIR3129-201ENST00000581095 76 ntBASIC-3.36□□□□□ -2.95
LINC00643Q86TS7 AL589826.1-201ENST00000340697 249 ntBASIC-3.37□□□□□ -2.95
LINC00643Q86TS7 RNU6-1257P-201ENST00000384625 110 ntBASIC-3.37□□□□□ -2.95
LINC00643Q86TS7 Y_RNA.542-201ENST00000384641 111 ntBASIC-3.37□□□□□ -2.95
LINC00643Q86TS7 RPL35AP4-201ENST00000412007 102 ntBASIC-3.37□□□□□ -2.95
LINC00643Q86TS7 MTND2P22-201ENST00000444325 1033 ntBASIC-3.37□□□□□ -2.95
LINC00643Q86TS7 AC107399.1-201ENST00000451226 265 ntBASIC-3.37□□□□□ -2.95
LINC00643Q86TS7 Y_RNA.700-201ENST00000516806 100 ntBASIC-3.37□□□□□ -2.95
LINC00643Q86TS7 MIR5683-201ENST00000636514 76 ntBASIC-3.37□□□□□ -2.95
LINC00643Q86TS7 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-3.37□□□□□ -2.95
LINC00643Q86TS7 Y_RNA.340-201ENST00000365330 92 ntBASIC-3.38□□□□□ -2.95
LINC00643Q86TS7 RNU4-17P-201ENST00000365598 141 ntBASIC-3.38□□□□□ -2.95
LINC00643Q86TS7 RNU6-842P-201ENST00000384269 107 ntBASIC-3.38□□□□□ -2.95
LINC00643Q86TS7 RNU6-472P-201ENST00000384299 107 ntBASIC-3.38□□□□□ -2.95
LINC00643Q86TS7 RNU6-880P-201ENST00000384526 107 ntBASIC-3.38□□□□□ -2.95
LINC00643Q86TS7 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-3.38□□□□□ -2.95
LINC00643Q86TS7 SNORD81.1-201ENST00000363064 77 ntBASIC-3.39□□□□□ -2.95
LINC00643Q86TS7 Y_RNA.284-201ENST00000364806 102 ntBASIC-3.39□□□□□ -2.95
LINC00643Q86TS7 SNORD114-3-201ENST00000364969 75 ntBASIC-3.39□□□□□ -2.95
LINC00643Q86TS7 Y_RNA.570-201ENST00000384750 101 ntBASIC-3.39□□□□□ -2.95
LINC00643Q86TS7 RNU6-935P-201ENST00000410371 100 ntBASIC-3.39□□□□□ -2.95
LINC00643Q86TS7 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC-3.39□□□□□ -2.95
LINC00643Q86TS7 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-3.39□□□□□ -2.95
LINC00643Q86TS7 MIR4696-201ENST00000581431 70 ntBASIC-3.39□□□□□ -2.95
LINC00643Q86TS7 Y_RNA.78-201ENST00000362970 110 ntBASIC-3.4□□□□□ -2.95
LINC00643Q86TS7 RNU6-1252P-201ENST00000363054 104 ntBASIC-3.4□□□□□ -2.95
LINC00643Q86TS7 Y_RNA.135-201ENST00000363439 95 ntBASIC-3.4□□□□□ -2.95
LINC00643Q86TS7 Y_RNA.331-201ENST00000365267 102 ntBASIC-3.4□□□□□ -2.95
LINC00643Q86TS7 RNU6-1104P-201ENST00000384723 104 ntBASIC-3.4□□□□□ -2.95
LINC00643Q86TS7 RNU6-1307P-201ENST00000391012 103 ntBASIC-3.4□□□□□ -2.95
LINC00643Q86TS7 MIR1270-201ENST00000459320 83 ntBASIC-3.4□□□□□ -2.95
LINC00643Q86TS7 RNU6-1299P-201ENST00000516316 100 ntBASIC-3.4□□□□□ -2.95
LINC00643Q86TS7 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-3.4□□□□□ -2.95
LINC00643Q86TS7 RNU6-664P-201ENST00000362381 107 ntBASIC-3.41□□□□□ -2.96
LINC00643Q86TS7 RNU6-79P-201ENST00000362511 107 ntBASIC-3.41□□□□□ -2.96
LINC00643Q86TS7 RNU6-957P-201ENST00000363652 99 ntBASIC-3.41□□□□□ -2.96
LINC00643Q86TS7 RNU6-312P-201ENST00000364629 107 ntBASIC-3.41□□□□□ -2.96
LINC00643Q86TS7 Y_RNA.428-201ENST00000384078 102 ntBASIC-3.41□□□□□ -2.96
LINC00643Q86TS7 MTND4P28-201ENST00000426217 387 ntBASIC-3.41□□□□□ -2.96
LINC00643Q86TS7 AL009048.1-201ENST00000450437 298 ntBASIC-3.41□□□□□ -2.96
LINC00643Q86TS7 RNU6-1238P-201ENST00000517215 102 ntBASIC-3.41□□□□□ -2.96
LINC00643Q86TS7 ZNF519P2-201ENST00000557032 169 ntBASIC-3.41□□□□□ -2.96
LINC00643Q86TS7 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC-3.41□□□□□ -2.96
LINC00643Q86TS7 Y_RNA.5-201ENST00000362334 102 ntBASIC-3.42□□□□□ -2.96
LINC00643Q86TS7 Y_RNA.348-201ENST00000365403 103 ntBASIC-3.42□□□□□ -2.96
LINC00643Q86TS7 Y_RNA.381-201ENST00000365666 102 ntBASIC-3.42□□□□□ -2.96
LINC00643Q86TS7 Y_RNA.521-201ENST00000384560 114 ntBASIC-3.42□□□□□ -2.96
LINC00643Q86TS7 Y_RNA.558-201ENST00000384685 113 ntBASIC-3.42□□□□□ -2.96
LINC00643Q86TS7 MIR514A2-201ENST00000385131 88 ntBASIC-3.42□□□□□ -2.96
LINC00643Q86TS7 MIR514A3-201ENST00000385132 88 ntBASIC-3.42□□□□□ -2.96
LINC00643Q86TS7 RNU6-570P-201ENST00000517051 105 ntBASIC-3.42□□□□□ -2.96
LINC00643Q86TS7 AP002795.1-201ENST00000534879 84 ntBASIC-3.42□□□□□ -2.96
LINC00643Q86TS7 MIR4724-201ENST00000579485 89 ntBASIC-3.42□□□□□ -2.96
LINC00643Q86TS7 MIR3942-201ENST00000585264 109 ntBASIC-3.42□□□□□ -2.96
LINC00643Q86TS7 MIR376B-201ENST00000614515 100 ntBASIC-3.42□□□□□ -2.96
LINC00643Q86TS7 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-3.42□□□□□ -2.96
LINC00643Q86TS7 SNORD36A-201ENST00000362874 73 ntBASIC-3.43□□□□□ -2.96
LINC00643Q86TS7 RNA5SP331-201ENST00000364986 107 ntBASIC-3.43□□□□□ -2.96
LINC00643Q86TS7 Y_RNA.383-201ENST00000383855 97 ntBASIC-3.43□□□□□ -2.96
LINC00643Q86TS7 RPS3AP52-201ENST00000435639 297 ntBASIC-3.43□□□□□ -2.96
LINC00643Q86TS7 snoU109.3-201ENST00000459477 145 ntBASIC-3.43□□□□□ -2.96
LINC00643Q86TS7 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC-3.43□□□□□ -2.96
LINC00643Q86TS7 Y_RNA.372-201ENST00000365599 102 ntBASIC-3.44□□□□□ -2.96
LINC00643Q86TS7 Y_RNA.531-201ENST00000384589 121 ntBASIC-3.44□□□□□ -2.96
LINC00643Q86TS7 SNORD78.2-201ENST00000391076 69 ntBASIC-3.44□□□□□ -2.96
LINC00643Q86TS7 RNA5SP153-201ENST00000516498 76 ntBASIC-3.44□□□□□ -2.96
LINC00643Q86TS7 RNU2-4P-201ENST00000606190 192 ntBASIC-3.44□□□□□ -2.96
LINC00643Q86TS7 RNY1P6-201ENST00000384193 109 ntBASIC-3.45□□□□□ -2.96
LINC00643Q86TS7 RNU6-297P-201ENST00000384636 107 ntBASIC-3.45□□□□□ -2.96
LINC00643Q86TS7 MIR451A-201ENST00000385059 72 ntBASIC-3.45□□□□□ -2.96
LINC00643Q86TS7 RNU6-695P-201ENST00000391157 104 ntBASIC-3.45□□□□□ -2.96
LINC00643Q86TS7 U3.27-201ENST00000391237 200 ntBASIC-3.45□□□□□ -2.96
LINC00643Q86TS7 AC097520.1-201ENST00000624435 385 ntBASIC-3.45□□□□□ -2.96
LINC00643Q86TS7 Y_RNA.77-201ENST00000362962 107 ntBASIC-3.46□□□□□ -2.96
LINC00643Q86TS7 Y_RNA.288-201ENST00000364854 92 ntBASIC-3.46□□□□□ -2.96
LINC00643Q86TS7 MIR1468-201ENST00000410600 86 ntBASIC-3.46□□□□□ -2.96
LINC00643Q86TS7 RNU7-2P-201ENST00000516096 62 ntBASIC-3.46□□□□□ -2.96
LINC00643Q86TS7 RNU6-980P-201ENST00000516925 103 ntBASIC-3.46□□□□□ -2.96
LINC00643Q86TS7 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-3.46□□□□□ -2.96
LINC00643Q86TS7 Y_RNA.23-201ENST00000362496 106 ntBASIC-3.47□□□□□ -2.96
LINC00643Q86TS7 RNU5E-4P-201ENST00000364931 120 ntBASIC-3.47□□□□□ -2.96
LINC00643Q86TS7 RNU6-256P-201ENST00000516747 97 ntBASIC-3.47□□□□□ -2.96
LINC00643Q86TS7 AC009779.6-201ENST00000603972 165 ntBASIC-3.47□□□□□ -2.96
LINC00643Q86TS7 FAS-AS1.1-201ENST00000615327 126 ntBASIC-3.47□□□□□ -2.96
LINC00643Q86TS7 Y_RNA.303-201ENST00000364998 94 ntBASIC-3.48□□□□□ -2.97
LINC00643Q86TS7 RNU6-1248P-201ENST00000391096 64 ntBASIC-3.48□□□□□ -2.97
LINC00643Q86TS7 MIR1255B2-201ENST00000408618 67 ntBASIC-3.48□□□□□ -2.97
LINC00643Q86TS7 RNU2-55P-201ENST00000411146 174 ntBASIC-3.48□□□□□ -2.97
LINC00643Q86TS7 MTND2P39-201ENST00000457230 764 ntBASIC-3.48□□□□□ -2.97
LINC00643Q86TS7 Y_RNA.633-201ENST00000459107 95 ntBASIC-3.48□□□□□ -2.97
LINC00643Q86TS7 Y_RNA.704-201ENST00000516851 102 ntBASIC-3.48□□□□□ -2.97
LINC00643Q86TS7 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-3.48□□□□□ -2.97
LINC00643Q86TS7 MIR3913-1-201ENST00000577744 102 ntBASIC-3.48□□□□□ -2.97
LINC00643Q86TS7 MIR4659A-201ENST00000580269 81 ntBASIC-3.48□□□□□ -2.97
LINC00643Q86TS7 AC092794.2-201ENST00000620933 563 ntBASIC-3.48□□□□□ -2.97
LINC00643Q86TS7 RNY4P27-201ENST00000363341 96 ntBASIC-3.49□□□□□ -2.97
LINC00643Q86TS7 SNORD42A-201ENST00000459584 64 ntBASIC-3.49□□□□□ -2.97
LINC00643Q86TS7 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-3.49□□□□□ -2.97
LINC00643Q86TS7 MTND2P31-201ENST00000512602 616 ntBASIC-3.49□□□□□ -2.97
LINC00643Q86TS7 MIR3672-201ENST00000584290 82 ntBASIC-3.49□□□□□ -2.97
Retrieved 100 of 98,524 protein–RNA pairs in 212.2 ms