Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 SNORA1.1-201ENST00000364671 133 ntBASIC1.44□□□□□ -2.18
USP43Q70EL4 SNORA32-201ENST00000384072 121 ntBASIC1.44□□□□□ -2.18
USP43Q70EL4 MIR889-201ENST00000401280 79 ntBASIC1.44□□□□□ -2.18
USP43Q70EL4 Y_RNA.609-201ENST00000410669 89 ntBASIC1.44□□□□□ -2.18
USP43Q70EL4 AC073261.1-201ENST00000429409 121 ntBASIC1.44□□□□□ -2.18
USP43Q70EL4 AL020996.3-201ENST00000606617 222 ntBASIC1.44□□□□□ -2.18
USP43Q70EL4 MIR8055-201ENST00000610739 97 ntBASIC1.44□□□□□ -2.18
USP43Q70EL4 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.44□□□□□ -2.18
USP43Q70EL4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.44□□□□□ -2.18
USP43Q70EL4 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.43□□□□□ -2.18
USP43Q70EL4 Y_RNA.118-201ENST00000363300 101 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 SNORA25.9-201ENST00000365087 128 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 RNU6-342P-201ENST00000384521 104 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 MIR34C-201ENST00000384831 77 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 MIR320A-201ENST00000385302 82 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 RNU7-73P-201ENST00000458743 63 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 AC023790.1-201ENST00000482174 347 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 RNU7-12P-201ENST00000516030 62 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 RNU7-2P-201ENST00000516096 62 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 RNU6-523P-201ENST00000516304 54 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 RNA5SP481-201ENST00000516814 122 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 RNU6-958P-201ENST00000516995 106 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 MIR548AR-201ENST00000582191 57 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 MIR4712-201ENST00000583750 82 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 AC103810.8-201ENST00000607347 118 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 AL512598.1-201ENST00000610158 273 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 MIR8081-201ENST00000611533 95 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 AL513423.1-201ENST00000621695 132 ntBASIC1.43□□□□□ -2.18
USP43Q70EL4 SNORD38.1-201ENST00000363863 68 ntBASIC1.42□□□□□ -2.18
USP43Q70EL4 Y_RNA.508-201ENST00000384502 114 ntBASIC1.42□□□□□ -2.18
USP43Q70EL4 MIR206-201ENST00000384872 86 ntBASIC1.42□□□□□ -2.18
USP43Q70EL4 MIR452-201ENST00000385020 85 ntBASIC1.42□□□□□ -2.18
USP43Q70EL4 MIR660-201ENST00000385235 97 ntBASIC1.42□□□□□ -2.18
USP43Q70EL4 SNORD77B-201ENST00000391112 67 ntBASIC1.42□□□□□ -2.18
USP43Q70EL4 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.42□□□□□ -2.18
USP43Q70EL4 RPS29P29-201ENST00000456396 171 ntBASIC1.42□□□□□ -2.18
USP43Q70EL4 snoU13.27-201ENST00000459278 104 ntBASIC1.42□□□□□ -2.18
USP43Q70EL4 RNU7-35P-201ENST00000517174 62 ntBASIC1.42□□□□□ -2.18
USP43Q70EL4 DNAJC19P9-201ENST00000555084 351 ntBASIC1.42□□□□□ -2.18
USP43Q70EL4 AC140658.3-201ENST00000567603 271 ntBASIC1.42□□□□□ -2.18
USP43Q70EL4 MIR4791-201ENST00000607666 84 ntBASIC1.42□□□□□ -2.18
USP43Q70EL4 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.42□□□□□ -2.18
USP43Q70EL4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.42□□□□□ -2.18
USP43Q70EL4 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.41□□□□□ -2.18
USP43Q70EL4 Y_RNA.173-201ENST00000363776 113 ntBASIC1.41□□□□□ -2.18
USP43Q70EL4 Y_RNA.370-201ENST00000365589 108 ntBASIC1.41□□□□□ -2.18
USP43Q70EL4 MIR526A1-201ENST00000384897 85 ntBASIC1.41□□□□□ -2.18
USP43Q70EL4 MIR30A-201ENST00000385092 71 ntBASIC1.41□□□□□ -2.18
USP43Q70EL4 MIR516B2-201ENST00000385190 85 ntBASIC1.41□□□□□ -2.18
USP43Q70EL4 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
USP43Q70EL4 RNU4-62P-201ENST00000410125 130 ntBASIC1.41□□□□□ -2.18
USP43Q70EL4 HMGN1P33-201ENST00000432945 451 ntBASIC1.41□□□□□ -2.18
USP43Q70EL4 SNORA31.17-201ENST00000516953 127 ntBASIC1.41□□□□□ -2.18
USP43Q70EL4 MIR4709-201ENST00000577272 72 ntBASIC1.41□□□□□ -2.18
USP43Q70EL4 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.41□□□□□ -2.18
USP43Q70EL4 MIR3152-201ENST00000579801 74 ntBASIC1.41□□□□□ -2.18
USP43Q70EL4 AC096720.1-201ENST00000604441 183 ntBASIC1.41□□□□□ -2.18
USP43Q70EL4 MIR8070-201ENST00000616510 88 ntBASIC1.41□□□□□ -2.18
USP43Q70EL4 MIR8065-201ENST00000620577 100 ntBASIC1.41□□□□□ -2.18
USP43Q70EL4 AL161722.3-201ENST00000605789 2983 ntBASIC1.4□□□□□ -2.19
USP43Q70EL4 MIR424-201ENST00000362227 98 ntBASIC1.4□□□□□ -2.19
USP43Q70EL4 MIR150-201ENST00000385048 84 ntBASIC1.4□□□□□ -2.19
USP43Q70EL4 MIR136-201ENST00000385207 82 ntBASIC1.4□□□□□ -2.19
USP43Q70EL4 RNU2-7P-201ENST00000410794 178 ntBASIC1.4□□□□□ -2.19
USP43Q70EL4 AL161932.1-201ENST00000437408 146 ntBASIC1.4□□□□□ -2.19
USP43Q70EL4 AC093850.1-201ENST00000454121 251 ntBASIC1.4□□□□□ -2.19
USP43Q70EL4 RNU7-53P-201ENST00000516705 60 ntBASIC1.4□□□□□ -2.19
USP43Q70EL4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.4□□□□□ -2.19
USP43Q70EL4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.4□□□□□ -2.19
USP43Q70EL4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.39□□□□□ -2.19
USP43Q70EL4 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.39□□□□□ -2.19
USP43Q70EL4 RNU1-42P-201ENST00000364033 160 ntBASIC1.39□□□□□ -2.19
USP43Q70EL4 Y_RNA.565-201ENST00000384719 101 ntBASIC1.39□□□□□ -2.19
USP43Q70EL4 MIR548G-201ENST00000408442 89 ntBASIC1.39□□□□□ -2.19
USP43Q70EL4 RNU7-67P-201ENST00000459003 62 ntBASIC1.39□□□□□ -2.19
USP43Q70EL4 AC093729.1-201ENST00000513074 128 ntBASIC1.39□□□□□ -2.19
USP43Q70EL4 AL513043.2-201ENST00000573941 143 ntBASIC1.39□□□□□ -2.19
USP43Q70EL4 AC243994.1-201ENST00000618627 109 ntBASIC1.39□□□□□ -2.19
USP43Q70EL4 RNU6-478P-201ENST00000363904 110 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 SNORA1.2-201ENST00000365189 134 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 Y_RNA.567-201ENST00000384736 106 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 MIR194-1-201ENST00000384892 85 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 RNU6-1321P-201ENST00000390905 107 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 RNU6-360P-201ENST00000390944 104 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 RNU6-955P-201ENST00000410497 104 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 AC087499.7-201ENST00000441958 109 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 SNORD123-201ENST00000459473 70 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 AC004223.1-201ENST00000479840 271 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 RNU7-153P-201ENST00000516455 62 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 SNORD67.1-201ENST00000516618 108 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 SNORD53B-201ENST00000577887 78 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 FAM106DP-201ENST00000586416 501 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 AC145423.2-201ENST00000610631 239 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 SNORD3E-202ENST00000627253 216 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 Z97988.1-201ENST00000637697 135 ntBASIC1.38□□□□□ -2.19
USP43Q70EL4 RNA5SP133-201ENST00000363368 119 ntBASIC1.37□□□□□ -2.19
USP43Q70EL4 RNU6-624P-201ENST00000363411 107 ntBASIC1.37□□□□□ -2.19
USP43Q70EL4 RNU6-439P-201ENST00000384188 106 ntBASIC1.37□□□□□ -2.19
USP43Q70EL4 SNORA2B-201ENST00000384583 137 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 208.8 ms