Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC104465.1-201ENST00000611365 139 ntBASIC0.76□□□□□ -2.29
COL28A1Q2UY09 AL627230.5-201ENST00000619807 58 ntBASIC0.76□□□□□ -2.29
COL28A1Q2UY09 SNORD114-2-201ENST00000363953 78 ntBASIC0.75□□□□□ -2.29
COL28A1Q2UY09 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
COL28A1Q2UY09 SNORD116-18-201ENST00000383961 92 ntBASIC0.75□□□□□ -2.29
COL28A1Q2UY09 RNU6-949P-201ENST00000384040 107 ntBASIC0.75□□□□□ -2.29
COL28A1Q2UY09 Y_RNA.464-201ENST00000384282 110 ntBASIC0.75□□□□□ -2.29
COL28A1Q2UY09 SNORA18-201ENST00000384416 132 ntBASIC0.75□□□□□ -2.29
COL28A1Q2UY09 MIR605-201ENST00000385078 83 ntBASIC0.75□□□□□ -2.29
COL28A1Q2UY09 AC015818.7-201ENST00000428754 109 ntBASIC0.75□□□□□ -2.29
COL28A1Q2UY09 AC087499.7-201ENST00000441958 109 ntBASIC0.75□□□□□ -2.29
COL28A1Q2UY09 RNU7-113P-201ENST00000459273 62 ntBASIC0.75□□□□□ -2.29
COL28A1Q2UY09 Y_RNA.690-201ENST00000516603 95 ntBASIC0.75□□□□□ -2.29
COL28A1Q2UY09 AC133485.4-201ENST00000561835 220 ntBASIC0.75□□□□□ -2.29
COL28A1Q2UY09 AC138907.4-201ENST00000570107 226 ntBASIC0.75□□□□□ -2.29
COL28A1Q2UY09 AC243829.3-201ENST00000622177 108 ntBASIC0.75□□□□□ -2.29
COL28A1Q2UY09 RNA5SP347-201ENST00000362445 119 ntBASIC0.74□□□□□ -2.29
COL28A1Q2UY09 Y_RNA.171-201ENST00000363760 102 ntBASIC0.74□□□□□ -2.29
COL28A1Q2UY09 MIR520H-201ENST00000385126 88 ntBASIC0.74□□□□□ -2.29
COL28A1Q2UY09 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.74□□□□□ -2.29
COL28A1Q2UY09 RNU6-240P-201ENST00000516098 97 ntBASIC0.74□□□□□ -2.29
COL28A1Q2UY09 RNU6-1212P-201ENST00000517023 104 ntBASIC0.74□□□□□ -2.29
COL28A1Q2UY09 RNU7-35P-201ENST00000517174 62 ntBASIC0.74□□□□□ -2.29
COL28A1Q2UY09 RNU6-309P-201ENST00000364573 106 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 Y_RNA.400-201ENST00000383963 111 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU6-804P-201ENST00000384286 107 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU6-1237P-201ENST00000384777 107 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 MIR513C-201ENST00000401352 84 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU6-447P-201ENST00000410293 104 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU6-1118P-201ENST00000410382 104 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU6-1076P-201ENST00000410397 104 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU6-355P-201ENST00000410427 104 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU6-791P-201ENST00000410467 104 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU6-705P-201ENST00000410601 104 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU6-1100P-201ENST00000410691 104 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU6-860P-201ENST00000410860 104 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU6-1217P-201ENST00000411276 104 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU6-785P-201ENST00000411324 104 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU6-351P-201ENST00000516097 100 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 Y_RNA.686-201ENST00000516548 134 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNA5SP285-201ENST00000516619 119 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.73□□□□□ -2.29
COL28A1Q2UY09 AC011195.1-201ENST00000578177 177 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 MIR548X2-201ENST00000579776 100 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 U6.90-201ENST00000614007 104 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 U6.70-201ENST00000620287 104 ntBASIC0.73□□□□□ -2.29
COL28A1Q2UY09 RNU4-45P-201ENST00000365469 141 ntBASIC0.72□□□□□ -2.29
COL28A1Q2UY09 Y_RNA.398-201ENST00000383952 99 ntBASIC0.72□□□□□ -2.29
COL28A1Q2UY09 Y_RNA.470-201ENST00000384307 117 ntBASIC0.72□□□□□ -2.29
COL28A1Q2UY09 RNU6-364P-201ENST00000384387 107 ntBASIC0.72□□□□□ -2.29
COL28A1Q2UY09 Y_RNA.531-201ENST00000384589 121 ntBASIC0.72□□□□□ -2.29
COL28A1Q2UY09 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.72□□□□□ -2.29
COL28A1Q2UY09 RPL39P25-201ENST00000449384 154 ntBASIC0.72□□□□□ -2.29
COL28A1Q2UY09 RNU2-35P-201ENST00000516446 142 ntBASIC0.72□□□□□ -2.29
COL28A1Q2UY09 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.72□□□□□ -2.29
COL28A1Q2UY09 AC004812.1-201ENST00000540773 146 ntBASIC0.72□□□□□ -2.29
COL28A1Q2UY09 AC090897.1-201ENST00000580909 226 ntBASIC0.72□□□□□ -2.29
COL28A1Q2UY09 AC021443.1-201ENST00000604478 211 ntBASIC0.72□□□□□ -2.29
COL28A1Q2UY09 AP001340.1-201ENST00000624405 217 ntBASIC0.72□□□□□ -2.29
COL28A1Q2UY09 HSBP1P2-201ENST00000299671 229 ntBASIC0.71□□□□□ -2.3
COL28A1Q2UY09 RNY1P13-201ENST00000365030 105 ntBASIC0.71□□□□□ -2.3
COL28A1Q2UY09 U8.15-201ENST00000390947 134 ntBASIC0.71□□□□□ -2.3
COL28A1Q2UY09 SNORD93-201ENST00000408813 74 ntBASIC0.71□□□□□ -2.3
COL28A1Q2UY09 AC096949.1-201ENST00000412047 152 ntBASIC0.71□□□□□ -2.3
COL28A1Q2UY09 RNU7-102P-201ENST00000458948 62 ntBASIC0.71□□□□□ -2.3
COL28A1Q2UY09 COX6CP6-201ENST00000490840 228 ntBASIC0.71□□□□□ -2.3
COL28A1Q2UY09 RNA5SP33-201ENST00000516687 98 ntBASIC0.71□□□□□ -2.3
COL28A1Q2UY09 RNU7-156P-201ENST00000517214 74 ntBASIC0.71□□□□□ -2.3
COL28A1Q2UY09 Y_RNA.299-201ENST00000364973 94 ntBASIC0.7□□□□□ -2.3
COL28A1Q2UY09 VTRNA1-3-201ENST00000365645 89 ntBASIC0.7□□□□□ -2.3
COL28A1Q2UY09 SNORD100-201ENST00000408573 76 ntBASIC0.7□□□□□ -2.3
COL28A1Q2UY09 AL512326.2-201ENST00000426359 151 ntBASIC0.7□□□□□ -2.3
COL28A1Q2UY09 RNU7-164P-201ENST00000459221 62 ntBASIC0.7□□□□□ -2.3
COL28A1Q2UY09 Y_RNA.692-201ENST00000516627 105 ntBASIC0.7□□□□□ -2.3
COL28A1Q2UY09 AP003327.1-201ENST00000529684 127 ntBASIC0.7□□□□□ -2.3
COL28A1Q2UY09 MIR3121-201ENST00000579680 77 ntBASIC0.7□□□□□ -2.3
COL28A1Q2UY09 MIR3668-201ENST00000582138 75 ntBASIC0.7□□□□□ -2.3
COL28A1Q2UY09 MIR6866-201ENST00000638146 69 ntBASIC0.7□□□□□ -2.3
COL28A1Q2UY09 Y_RNA.42-201ENST00000362660 108 ntBASIC0.69□□□□□ -2.3
COL28A1Q2UY09 RNU4-83P-201ENST00000410863 133 ntBASIC0.69□□□□□ -2.3
COL28A1Q2UY09 RNU7-79P-201ENST00000516082 62 ntBASIC0.69□□□□□ -2.3
COL28A1Q2UY09 RNU6-765P-201ENST00000516916 99 ntBASIC0.69□□□□□ -2.3
COL28A1Q2UY09 MIR8066-201ENST00000617280 78 ntBASIC0.69□□□□□ -2.3
COL28A1Q2UY09 RNU6-508P-201ENST00000363231 103 ntBASIC0.68□□□□□ -2.3
COL28A1Q2UY09 Y_RNA.215-201ENST00000364204 112 ntBASIC0.68□□□□□ -2.3
COL28A1Q2UY09 RNU6-915P-201ENST00000364943 103 ntBASIC0.68□□□□□ -2.3
COL28A1Q2UY09 Y_RNA.298-201ENST00000364960 107 ntBASIC0.68□□□□□ -2.3
COL28A1Q2UY09 RNU6-460P-201ENST00000391158 108 ntBASIC0.68□□□□□ -2.3
COL28A1Q2UY09 Y_RNA.588-201ENST00000391254 102 ntBASIC0.68□□□□□ -2.3
COL28A1Q2UY09 RNU7-123P-201ENST00000515911 60 ntBASIC0.68□□□□□ -2.3
COL28A1Q2UY09 AC008608.1-201ENST00000603910 127 ntBASIC0.68□□□□□ -2.3
COL28A1Q2UY09 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.67□□□□□ -2.3
COL28A1Q2UY09 Y_RNA.8-201ENST00000362353 102 ntBASIC0.67□□□□□ -2.3
COL28A1Q2UY09 Y_RNA.366-201ENST00000365540 102 ntBASIC0.67□□□□□ -2.3
COL28A1Q2UY09 MIR569-201ENST00000385228 96 ntBASIC0.67□□□□□ -2.3
COL28A1Q2UY09 AL606490.4-201ENST00000423117 127 ntBASIC0.67□□□□□ -2.3
COL28A1Q2UY09 SNORA25.12-201ENST00000516202 82 ntBASIC0.67□□□□□ -2.3
COL28A1Q2UY09 MTND5P41-201ENST00000517498 206 ntBASIC0.67□□□□□ -2.3
COL28A1Q2UY09 AP001328.1-201ENST00000528550 176 ntBASIC0.67□□□□□ -2.3
COL28A1Q2UY09 MIR3612-201ENST00000579753 87 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 197.8 ms