Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.65□□□□□ -2.15
COL4A3Q01955 MIR548AO-201ENST00000579992 96 ntBASIC1.65□□□□□ -2.15
COL4A3Q01955 MIR4439-201ENST00000583746 80 ntBASIC1.65□□□□□ -2.15
COL4A3Q01955 IGLL4P-201ENST00000614590 133 ntBASIC1.65□□□□□ -2.15
COL4A3Q01955 MIR4251-201ENST00000635819 61 ntBASIC1.65□□□□□ -2.15
COL4A3Q01955 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
COL4A3Q01955 Y_RNA.17-201ENST00000362433 111 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNA5SP276-201ENST00000362580 94 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNY1P1-201ENST00000364372 112 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 Y_RNA.467-201ENST00000384297 102 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6-887P-201ENST00000410660 100 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RPL31P63-201ENST00000422565 375 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 AC109327.2-201ENST00000448339 378 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 AC009474.2-201ENST00000451383 136 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RPS29P1-201ENST00000465274 159 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 MIR4421-201ENST00000578133 69 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 MIR6788-201ENST00000618842 66 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
COL4A3Q01955 MIR494-201ENST00000349529 81 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNA5SP259-201ENST00000365541 109 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6-1152P-201ENST00000384576 107 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6-447P-201ENST00000410293 104 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6-1118P-201ENST00000410382 104 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6-1076P-201ENST00000410397 104 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6-355P-201ENST00000410427 104 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6-791P-201ENST00000410467 104 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6-705P-201ENST00000410601 104 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6-1100P-201ENST00000410691 104 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6-860P-201ENST00000410860 104 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6-1217P-201ENST00000411276 104 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6-785P-201ENST00000411324 104 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 HMGN2P19-201ENST00000425149 265 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 SUMO1P4-201ENST00000429430 302 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 JTBP1-201ENST00000441314 247 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6ATAC17P-201ENST00000516074 71 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.64□□□□□ -2.15
COL4A3Q01955 RN7SL793P-201ENST00000583259 296 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 RNU6-86P-201ENST00000606534 107 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 U6.90-201ENST00000614007 104 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 U6.70-201ENST00000620287 104 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 uc_338.20-201ENST00000621563 178 ntBASIC1.64□□□□□ -2.15
COL4A3Q01955 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.64□□□□□ -2.15
COL4A3Q01955 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
COL4A3Q01955 SNORD114-10-201ENST00000363409 72 ntBASIC1.63□□□□□ -2.15
COL4A3Q01955 SNORD58A-201ENST00000383875 65 ntBASIC1.63□□□□□ -2.15
COL4A3Q01955 SNORD116-22-201ENST00000384430 92 ntBASIC1.63□□□□□ -2.15
COL4A3Q01955 MIR524-201ENST00000385242 87 ntBASIC1.63□□□□□ -2.15
COL4A3Q01955 RNU6-592P-201ENST00000411333 103 ntBASIC1.63□□□□□ -2.15
COL4A3Q01955 AC090844.1-201ENST00000422019 156 ntBASIC1.63□□□□□ -2.15
COL4A3Q01955 SNORD67.1-201ENST00000516618 108 ntBASIC1.63□□□□□ -2.15
COL4A3Q01955 AL773524.1-201ENST00000614065 229 ntBASIC1.63□□□□□ -2.15
COL4A3Q01955 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.63□□□□□ -2.15
COL4A3Q01955 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
COL4A3Q01955 RNY1P4-201ENST00000384595 115 ntBASIC1.62□□□□□ -2.15
COL4A3Q01955 U8.15-201ENST00000390947 134 ntBASIC1.62□□□□□ -2.15
COL4A3Q01955 RNU2-40P-201ENST00000410833 196 ntBASIC1.62□□□□□ -2.15
COL4A3Q01955 RNU7-41P-201ENST00000515917 61 ntBASIC1.62□□□□□ -2.15
COL4A3Q01955 RN7SKP12-201ENST00000516275 143 ntBASIC1.62□□□□□ -2.15
COL4A3Q01955 RNA5SP395-201ENST00000516567 118 ntBASIC1.62□□□□□ -2.15
COL4A3Q01955 PRELID3BP2-201ENST00000605362 201 ntBASIC1.62□□□□□ -2.15
COL4A3Q01955 RNU6-90P-201ENST00000606352 106 ntBASIC1.62□□□□□ -2.15
COL4A3Q01955 RNU6-1163P-201ENST00000364516 107 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 MIR144-201ENST00000384886 86 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 MIR513A1-201ENST00000385138 129 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 RNU6-1321P-201ENST00000390905 107 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 AL161935.2-201ENST00000414627 60 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 RPS29P28-201ENST00000446439 141 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
COL4A3Q01955 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.61□□□□□ -2.15
COL4A3Q01955 SNORD38.1-201ENST00000363863 68 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 Y_RNA.247-201ENST00000364500 92 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 RNU6-813P-201ENST00000384691 107 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 AC244023.1-201ENST00000426884 112 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 RN7SL274P-201ENST00000492268 272 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.61□□□□□ -2.15
COL4A3Q01955 MIR5194-201ENST00000582634 120 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 AC242498.1-201ENST00000604134 111 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
COL4A3Q01955 MIR376B-201ENST00000614515 100 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 AC105081.1-201ENST00000617727 106 ntBASIC1.61□□□□□ -2.15
COL4A3Q01955 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
COL4A3Q01955 Y_RNA.98-201ENST00000363109 102 ntBASIC1.6□□□□□ -2.15
COL4A3Q01955 RNA5SP393-201ENST00000363423 117 ntBASIC1.6□□□□□ -2.15
COL4A3Q01955 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.15
COL4A3Q01955 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
COL4A3Q01955 RNA5SP257-201ENST00000363023 116 ntBASIC1.59□□□□□ -2.15
COL4A3Q01955 RNY1P13-201ENST00000365030 105 ntBASIC1.59□□□□□ -2.15
COL4A3Q01955 MIR548J-201ENST00000408833 112 ntBASIC1.59□□□□□ -2.15
COL4A3Q01955 RNA5SP237-201ENST00000410414 113 ntBASIC1.59□□□□□ -2.15
COL4A3Q01955 RNU6-1006P-201ENST00000516998 103 ntBASIC1.59□□□□□ -2.15
COL4A3Q01955 RNU6-865P-201ENST00000364772 107 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 SNORA6-201ENST00000384033 151 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 Y_RNA.448-201ENST00000384185 108 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 Y_RNA.593-201ENST00000410292 98 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 RNU7-48P-201ENST00000458875 63 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 RNU1-92P-201ENST00000517017 135 ntBASIC1.58□□□□□ -2.16
COL4A3Q01955 AP003327.1-201ENST00000529684 127 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 332.1 ms