Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC069113.3-201ENST00000521019 150 ntBASIC0.14□□□□□ -2.39
LIM2P55344 MIR3128-201ENST00000581957 66 ntBASIC0.14□□□□□ -2.39
LIM2P55344 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.14□□□□□ -2.39
LIM2P55344 AC091304.10-201ENST00000641554 121 ntBASIC0.14□□□□□ -2.39
LIM2P55344 Y_RNA.52-201ENST00000362760 96 ntBASIC0.13□□□□□ -2.39
LIM2P55344 RNU4-58P-201ENST00000363192 141 ntBASIC0.13□□□□□ -2.39
LIM2P55344 RNU6-312P-201ENST00000364629 107 ntBASIC0.13□□□□□ -2.39
LIM2P55344 SNORA72.6-201ENST00000384520 129 ntBASIC0.13□□□□□ -2.39
LIM2P55344 MIRLET7F2-201ENST00000385277 83 ntBASIC0.13□□□□□ -2.39
LIM2P55344 RNU6-918P-201ENST00000391219 106 ntBASIC0.13□□□□□ -2.39
LIM2P55344 MTATP6P21-201ENST00000440681 189 ntBASIC0.13□□□□□ -2.39
LIM2P55344 RNU7-113P-201ENST00000459273 62 ntBASIC0.13□□□□□ -2.39
LIM2P55344 RNU6-1045P-201ENST00000516321 107 ntBASIC0.13□□□□□ -2.39
LIM2P55344 SNORA25.16-201ENST00000516741 121 ntBASIC0.13□□□□□ -2.39
LIM2P55344 U4.1-201ENST00000620349 87 ntBASIC0.13□□□□□ -2.39
LIM2P55344 Y_RNA.120-201ENST00000363304 110 ntBASIC0.12□□□□□ -2.39
LIM2P55344 SNORA42.1-201ENST00000363515 137 ntBASIC0.12□□□□□ -2.39
LIM2P55344 RNA5SP457-201ENST00000363657 124 ntBASIC0.12□□□□□ -2.39
LIM2P55344 Y_RNA.193-201ENST00000363979 102 ntBASIC0.12□□□□□ -2.39
LIM2P55344 Y_RNA.476-201ENST00000384347 108 ntBASIC0.12□□□□□ -2.39
LIM2P55344 SNORD28-201ENST00000384706 75 ntBASIC0.12□□□□□ -2.39
LIM2P55344 RNU6-535P-201ENST00000384722 107 ntBASIC0.12□□□□□ -2.39
LIM2P55344 AC107027.2-201ENST00000512197 115 ntBASIC0.12□□□□□ -2.39
LIM2P55344 MIR3149-201ENST00000584629 83 ntBASIC0.12□□□□□ -2.39
LIM2P55344 AC098479.1-201ENST00000609225 154 ntBASIC0.12□□□□□ -2.39
LIM2P55344 RNU4-67P-201ENST00000364569 141 ntBASIC0.11□□□□□ -2.39
LIM2P55344 SNORA20.1-201ENST00000364790 130 ntBASIC0.11□□□□□ -2.39
LIM2P55344 Y_RNA.470-201ENST00000384307 117 ntBASIC0.11□□□□□ -2.39
LIM2P55344 AC073261.1-201ENST00000429409 121 ntBASIC0.11□□□□□ -2.39
LIM2P55344 RNU6-111P-201ENST00000517179 105 ntBASIC0.11□□□□□ -2.39
LIM2P55344 MTND5P34-201ENST00000568888 325 ntBASIC0.11□□□□□ -2.39
LIM2P55344 MIR3646-201ENST00000578301 84 ntBASIC0.11□□□□□ -2.39
LIM2P55344 MIR4514-201ENST00000581410 57 ntBASIC0.11□□□□□ -2.39
LIM2P55344 MIR7107-201ENST00000611489 80 ntBASIC0.11□□□□□ -2.39
LIM2P55344 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.11□□□□□ -2.39
LIM2P55344 Y_RNA.60-201ENST00000362831 98 ntBASIC0.1□□□□□ -2.39
LIM2P55344 Y_RNA.162-201ENST00000363683 102 ntBASIC0.1□□□□□ -2.39
LIM2P55344 Y_RNA.337-201ENST00000365312 102 ntBASIC0.1□□□□□ -2.39
LIM2P55344 Y_RNA.357-201ENST00000365487 109 ntBASIC0.1□□□□□ -2.39
LIM2P55344 RNU6-1126P-201ENST00000384002 107 ntBASIC0.1□□□□□ -2.39
LIM2P55344 RNU6-815P-201ENST00000384080 113 ntBASIC0.1□□□□□ -2.39
LIM2P55344 RNU6-768P-201ENST00000384683 107 ntBASIC0.1□□□□□ -2.39
LIM2P55344 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.1□□□□□ -2.39
LIM2P55344 SNORA75.5-201ENST00000391291 81 ntBASIC0.1□□□□□ -2.39
LIM2P55344 RNA5SP227-201ENST00000516184 113 ntBASIC0.1□□□□□ -2.39
LIM2P55344 Y_RNA.680-201ENST00000516441 93 ntBASIC0.1□□□□□ -2.39
LIM2P55344 RNA5SP33-201ENST00000516687 98 ntBASIC0.1□□□□□ -2.39
LIM2P55344 MIR4719-201ENST00000585233 84 ntBASIC0.1□□□□□ -2.39
LIM2P55344 MIR411-201ENST00000362239 96 ntBASIC0.09□□□□□ -2.4
LIM2P55344 SNORD114-10-201ENST00000363409 72 ntBASIC0.09□□□□□ -2.4
LIM2P55344 Y_RNA.200-201ENST00000364018 102 ntBASIC0.09□□□□□ -2.4
LIM2P55344 RNU6-818P-201ENST00000364837 108 ntBASIC0.09□□□□□ -2.4
LIM2P55344 RNU6-702P-201ENST00000364982 107 ntBASIC0.09□□□□□ -2.4
LIM2P55344 RNU6-1336P-201ENST00000383886 109 ntBASIC0.09□□□□□ -2.4
LIM2P55344 Y_RNA.447-201ENST00000384184 113 ntBASIC0.09□□□□□ -2.4
LIM2P55344 Y_RNA.531-201ENST00000384589 121 ntBASIC0.09□□□□□ -2.4
LIM2P55344 RNA5SP299-201ENST00000391203 116 ntBASIC0.09□□□□□ -2.4
LIM2P55344 RNA5SP63-201ENST00000391225 112 ntBASIC0.09□□□□□ -2.4
LIM2P55344 MIR1295A-201ENST00000408463 79 ntBASIC0.09□□□□□ -2.4
LIM2P55344 SUMO1P3-201ENST00000439961 304 ntBASIC0.09□□□□□ -2.4
LIM2P55344 AL118496.2-201ENST00000448300 230 ntBASIC0.09□□□□□ -2.4
LIM2P55344 SCARNA15.1-201ENST00000516384 125 ntBASIC0.09□□□□□ -2.4
LIM2P55344 RNA5SP330-201ENST00000517096 96 ntBASIC0.09□□□□□ -2.4
LIM2P55344 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.09□□□□□ -2.4
LIM2P55344 SNORA9.1-201ENST00000362412 131 ntBASIC0.08□□□□□ -2.4
LIM2P55344 Y_RNA.83-201ENST00000363005 113 ntBASIC0.08□□□□□ -2.4
LIM2P55344 Y_RNA.85-201ENST00000363014 111 ntBASIC0.08□□□□□ -2.4
LIM2P55344 RNU6-1020P-201ENST00000363684 107 ntBASIC0.08□□□□□ -2.4
LIM2P55344 RNU6-1082P-201ENST00000364574 107 ntBASIC0.08□□□□□ -2.4
LIM2P55344 Y_RNA.299-201ENST00000364973 94 ntBASIC0.08□□□□□ -2.4
LIM2P55344 RNU6-690P-201ENST00000365242 106 ntBASIC0.08□□□□□ -2.4
LIM2P55344 RNU6-716P-201ENST00000365621 103 ntBASIC0.08□□□□□ -2.4
LIM2P55344 AC069271.1-201ENST00000445577 156 ntBASIC0.08□□□□□ -2.4
LIM2P55344 RNU6-531P-201ENST00000516694 104 ntBASIC0.08□□□□□ -2.4
LIM2P55344 DEFB131E-201ENST00000532329 154 ntBASIC0.08□□□□□ -2.4
LIM2P55344 MIR4305-201ENST00000583252 102 ntBASIC0.08□□□□□ -2.4
LIM2P55344 MIR6718-201ENST00000616153 80 ntBASIC0.08□□□□□ -2.4
LIM2P55344 AC244669.1-204ENST00000621564 178 ntBASIC0.08□□□□□ -2.4
LIM2P55344 Y_RNA.56-201ENST00000362798 112 ntBASIC0.07□□□□□ -2.4
LIM2P55344 RNA5SP133-201ENST00000363368 119 ntBASIC0.07□□□□□ -2.4
LIM2P55344 Y_RNA.452-201ENST00000384202 108 ntBASIC0.07□□□□□ -2.4
LIM2P55344 MTND3P2-201ENST00000438452 342 ntBASIC0.07□□□□□ -2.4
LIM2P55344 RNU7-137P-201ENST00000516788 62 ntBASIC0.07□□□□□ -2.4
LIM2P55344 MIR4503-201ENST00000582187 83 ntBASIC0.07□□□□□ -2.4
LIM2P55344 AC009779.6-201ENST00000603972 165 ntBASIC0.07□□□□□ -2.4
LIM2P55344 MIR6755-201ENST00000619993 66 ntBASIC0.07□□□□□ -2.4
LIM2P55344 Y_RNA.258-201ENST00000364613 105 ntBASIC0.06□□□□□ -2.4
LIM2P55344 Y_RNA.366-201ENST00000365540 102 ntBASIC0.06□□□□□ -2.4
LIM2P55344 Y_RNA.497-201ENST00000384447 98 ntBASIC0.06□□□□□ -2.4
LIM2P55344 AC244505.6-201ENST00000452829 130 ntBASIC0.06□□□□□ -2.4
LIM2P55344 AC138749.4-201ENST00000563970 127 ntBASIC0.06□□□□□ -2.4
LIM2P55344 MIR548AE2-201ENST00000583456 67 ntBASIC0.06□□□□□ -2.4
LIM2P55344 RNU7-10P-201ENST00000607194 63 ntBASIC0.06□□□□□ -2.4
LIM2P55344 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.06□□□□□ -2.4
LIM2P55344 TUG1_4.1-201ENST00000619464 181 ntBASIC0.06□□□□□ -2.4
LIM2P55344 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.05□□□□□ -2.4
LIM2P55344 MIR101-2-201ENST00000362195 79 ntBASIC0.05□□□□□ -2.4
LIM2P55344 Y_RNA.115-201ENST00000363272 98 ntBASIC0.05□□□□□ -2.4
LIM2P55344 RNA5SP245-201ENST00000364239 121 ntBASIC0.05□□□□□ -2.4
LIM2P55344 Y_RNA.233-201ENST00000364407 101 ntBASIC0.05□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 229.2 ms