Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MIR605-201ENST00000385078 83 ntBASIC0.83□□□□□ -2.28
HOXA1P49639 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.83□□□□□ -2.28
HOXA1P49639 PDCD5P2-201ENST00000507570 312 ntBASIC0.83□□□□□ -2.28
HOXA1P49639 Y_RNA.712-201ENST00000517011 92 ntBASIC0.83□□□□□ -2.28
HOXA1P49639 MIR4804-201ENST00000581683 73 ntBASIC0.83□□□□□ -2.28
HOXA1P49639 Y_RNA.344-201ENST00000365381 112 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 SNORA72.6-201ENST00000384520 129 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 MIR206-201ENST00000384872 86 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 MIR125B2-201ENST00000385128 89 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 MIR146A-201ENST00000385201 99 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 RNU6-1321P-201ENST00000390905 107 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 SNORD77B-201ENST00000391112 67 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 Y_RNA.588-201ENST00000391254 102 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 RNU4-83P-201ENST00000410863 133 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 FABP5P4-201ENST00000437203 171 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.82□□□□□ -2.28
HOXA1P49639 RNA5SP255-201ENST00000516370 107 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 SNORA25.16-201ENST00000516741 121 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 MIR4498-201ENST00000577599 66 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 MIR4491-201ENST00000581087 68 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 MIR3163-201ENST00000581592 73 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.82□□□□□ -2.28
HOXA1P49639 FAM71BP1-201ENST00000604431 523 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 SNORD114-21-201ENST00000606412 72 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 RMST_2.1-201ENST00000617263 136 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 U2.22-201ENST00000636441 106 ntBASIC0.82□□□□□ -2.28
HOXA1P49639 RNY1P10-201ENST00000363268 113 ntBASIC0.81□□□□□ -2.28
HOXA1P49639 Y_RNA.299-201ENST00000364973 94 ntBASIC0.81□□□□□ -2.28
HOXA1P49639 Y_RNA.448-201ENST00000384185 108 ntBASIC0.81□□□□□ -2.28
HOXA1P49639 RNU6-1117P-201ENST00000384525 104 ntBASIC0.81□□□□□ -2.28
HOXA1P49639 Y_RNA.549-201ENST00000384657 102 ntBASIC0.81□□□□□ -2.28
HOXA1P49639 MIR520H-201ENST00000385126 88 ntBASIC0.81□□□□□ -2.28
HOXA1P49639 RNU7-102P-201ENST00000458948 62 ntBASIC0.81□□□□□ -2.28
HOXA1P49639 Y_RNA.649-201ENST00000459077 103 ntBASIC0.81□□□□□ -2.28
HOXA1P49639 RNU6-406P-201ENST00000516470 107 ntBASIC0.81□□□□□ -2.28
HOXA1P49639 RNU7-156P-201ENST00000517214 74 ntBASIC0.81□□□□□ -2.28
HOXA1P49639 AL359821.1-201ENST00000605519 182 ntBASIC0.81□□□□□ -2.28
HOXA1P49639 AL035470.1-201ENST00000622571 220 ntBASIC0.81□□□□□ -2.28
HOXA1P49639 U6.109-201ENST00000636749 87 ntBASIC0.81□□□□□ -2.28
HOXA1P49639 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.81□□□□□ -2.28
HOXA1P49639 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.81□□□□□ -2.28
HOXA1P49639 MIR337-201ENST00000362281 93 ntBASIC0.8□□□□□ -2.28
HOXA1P49639 Y_RNA.13-201ENST00000362403 112 ntBASIC0.8□□□□□ -2.28
HOXA1P49639 RNU6-392P-201ENST00000364926 101 ntBASIC0.8□□□□□ -2.28
HOXA1P49639 Y_RNA.346-201ENST00000365385 112 ntBASIC0.8□□□□□ -2.28
HOXA1P49639 MIR548D2-201ENST00000384955 97 ntBASIC0.8□□□□□ -2.28
HOXA1P49639 AC008267.6-201ENST00000441664 139 ntBASIC0.8□□□□□ -2.28
HOXA1P49639 RNU7-56P-201ENST00000458744 62 ntBASIC0.8□□□□□ -2.28
HOXA1P49639 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.8□□□□□ -2.28
HOXA1P49639 MIR8066-201ENST00000617280 78 ntBASIC0.8□□□□□ -2.28
HOXA1P49639 RNA5SP133-201ENST00000363368 119 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 Y_RNA.353-201ENST00000365440 108 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 RNU6-364P-201ENST00000384387 107 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 SNORD105-201ENST00000386910 85 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 MIR759-201ENST00000390224 91 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
HOXA1P49639 RNU6-1168P-201ENST00000390831 104 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 RNU6-1154P-201ENST00000391001 104 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 MIR938-201ENST00000401216 83 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 SNORD99-201ENST00000408612 74 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 U7.7-201ENST00000459276 60 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 ACA64.5-201ENST00000516207 127 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 RNU6-1110P-201ENST00000516462 101 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 RNU6-789P-201ENST00000517105 102 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 AC138749.4-201ENST00000563970 127 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 MTND5P34-201ENST00000568888 325 ntBASIC0.79□□□□□ -2.28
HOXA1P49639 RNU4-38P-201ENST00000364472 129 ntBASIC0.78□□□□□ -2.28
HOXA1P49639 Y_RNA.362-201ENST00000365518 110 ntBASIC0.78□□□□□ -2.28
HOXA1P49639 MIR548A3-201ENST00000385297 97 ntBASIC0.78□□□□□ -2.28
HOXA1P49639 SNORA7.5-201ENST00000410672 110 ntBASIC0.78□□□□□ -2.28
HOXA1P49639 TRMT112P2-201ENST00000512910 132 ntBASIC0.78□□□□□ -2.28
HOXA1P49639 RNU6-1053P-201ENST00000515930 101 ntBASIC0.78□□□□□ -2.28
HOXA1P49639 RNU7-2P-201ENST00000516096 62 ntBASIC0.78□□□□□ -2.28
HOXA1P49639 RNU6-531P-201ENST00000516694 104 ntBASIC0.78□□□□□ -2.28
HOXA1P49639 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.78□□□□□ -2.28
HOXA1P49639 MIR4661-201ENST00000582720 75 ntBASIC0.78□□□□□ -2.28
HOXA1P49639 SNORD115-19-201ENST00000363098 82 ntBASIC0.77□□□□□ -2.29
HOXA1P49639 SNORD115-18-201ENST00000363293 82 ntBASIC0.77□□□□□ -2.29
HOXA1P49639 SNORD114-10-201ENST00000363409 72 ntBASIC0.77□□□□□ -2.29
HOXA1P49639 SNORA63.5-201ENST00000363548 123 ntBASIC0.77□□□□□ -2.29
HOXA1P49639 SNORD115-17-201ENST00000364612 82 ntBASIC0.77□□□□□ -2.29
HOXA1P49639 SNORD113-1-201ENST00000365321 69 ntBASIC0.77□□□□□ -2.29
HOXA1P49639 RNU1-119P-201ENST00000391122 165 ntBASIC0.77□□□□□ -2.29
HOXA1P49639 RNU6-62P-201ENST00000516526 102 ntBASIC0.77□□□□□ -2.29
HOXA1P49639 RNU6-521P-201ENST00000516663 105 ntBASIC0.77□□□□□ -2.29
HOXA1P49639 DEFB131E-201ENST00000532329 154 ntBASIC0.77□□□□□ -2.29
HOXA1P49639 AC007012.1-201ENST00000567192 175 ntBASIC0.77□□□□□ -2.29
HOXA1P49639 MIR6857-201ENST00000613267 93 ntBASIC0.77□□□□□ -2.29
HOXA1P49639 Y_RNA.42-201ENST00000362660 108 ntBASIC0.76□□□□□ -2.29
HOXA1P49639 AL603825.1-201ENST00000438481 80 ntBASIC0.76□□□□□ -2.29
HOXA1P49639 AL353813.1-201ENST00000440700 253 ntBASIC0.76□□□□□ -2.29
HOXA1P49639 AC133485.1-201ENST00000567176 124 ntBASIC0.76□□□□□ -2.29
HOXA1P49639 AC011195.1-201ENST00000578177 177 ntBASIC0.76□□□□□ -2.29
HOXA1P49639 SNORD92-201ENST00000585078 85 ntBASIC0.76□□□□□ -2.29
HOXA1P49639 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.76□□□□□ -2.29
HOXA1P49639 AC013244.2-201ENST00000603396 103 ntBASIC0.76□□□□□ -2.29
HOXA1P49639 MIR6082-201ENST00000613604 109 ntBASIC0.76□□□□□ -2.29
HOXA1P49639 U6.95-201ENST00000636931 70 ntBASIC0.76□□□□□ -2.29
HOXA1P49639 Y_RNA.119-201ENST00000363301 96 ntBASIC0.75□□□□□ -2.29
HOXA1P49639 RNY4P6-201ENST00000363667 96 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 227.8 ms