Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 RNU6-1125P-201ENST00000363601 107 ntBASIC1.87□□□□□ -2.11
LIMS1P48059 RNU6-949P-201ENST00000384040 107 ntBASIC1.87□□□□□ -2.11
LIMS1P48059 SNORA2B-201ENST00000384583 137 ntBASIC1.87□□□□□ -2.11
LIMS1P48059 MIR563-201ENST00000385080 79 ntBASIC1.87□□□□□ -2.11
LIMS1P48059 SUMO2P12-201ENST00000405924 140 ntBASIC1.87□□□□□ -2.11
LIMS1P48059 MIR1302-7-201ENST00000408841 72 ntBASIC1.87□□□□□ -2.11
LIMS1P48059 SPINT5P-201ENST00000448174 155 ntBASIC1.87□□□□□ -2.11
LIMS1P48059 snoU13.2-201ENST00000459201 104 ntBASIC1.87□□□□□ -2.11
LIMS1P48059 RNA5SP445-201ENST00000515889 115 ntBASIC1.87□□□□□ -2.11
LIMS1P48059 Y_RNA.676-201ENST00000516393 96 ntBASIC1.87□□□□□ -2.11
LIMS1P48059 AL513043.2-201ENST00000573941 143 ntBASIC1.87□□□□□ -2.11
LIMS1P48059 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.87□□□□□ -2.11
LIMS1P48059 AP000942.3-201ENST00000603702 160 ntBASIC1.87□□□□□ -2.11
LIMS1P48059 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.86□□□□□ -2.11
LIMS1P48059 SNORD115-27-201ENST00000364430 82 ntBASIC1.86□□□□□ -2.11
LIMS1P48059 RNY1P2-201ENST00000364820 117 ntBASIC1.86□□□□□ -2.11
LIMS1P48059 RNU6-1237P-201ENST00000384777 107 ntBASIC1.86□□□□□ -2.11
LIMS1P48059 MIR513A1-201ENST00000385138 129 ntBASIC1.86□□□□□ -2.11
LIMS1P48059 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.86□□□□□ -2.11
LIMS1P48059 MIR3192-201ENST00000584920 77 ntBASIC1.86□□□□□ -2.11
LIMS1P48059 PRELID3BP2-201ENST00000605362 201 ntBASIC1.86□□□□□ -2.11
LIMS1P48059 uc_338.20-201ENST00000621563 178 ntBASIC1.86□□□□□ -2.11
LIMS1P48059 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.86□□□□□ -2.11
LIMS1P48059 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.85□□□□□ -2.11
LIMS1P48059 Y_RNA.221-201ENST00000364248 96 ntBASIC1.85□□□□□ -2.11
LIMS1P48059 RNU6-24P-201ENST00000384440 107 ntBASIC1.85□□□□□ -2.11
LIMS1P48059 MIR181B2-201ENST00000385004 89 ntBASIC1.85□□□□□ -2.11
LIMS1P48059 RNA5SP237-201ENST00000410414 113 ntBASIC1.85□□□□□ -2.11
LIMS1P48059 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.85□□□□□ -2.11
LIMS1P48059 MIR5089-201ENST00000580047 84 ntBASIC1.85□□□□□ -2.11
LIMS1P48059 MIR219B-201ENST00000637023 88 ntBASIC1.85□□□□□ -2.11
LIMS1P48059 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.11
LIMS1P48059 RNU6-480P-201ENST00000384332 107 ntBASIC1.84□□□□□ -2.11
LIMS1P48059 MIR764-201ENST00000390811 85 ntBASIC1.84□□□□□ -2.11
LIMS1P48059 HMGN2P19-201ENST00000425149 265 ntBASIC1.84□□□□□ -2.11
LIMS1P48059 AL603825.1-201ENST00000438481 80 ntBASIC1.84□□□□□ -2.11
LIMS1P48059 SNRPGP12-201ENST00000449481 213 ntBASIC1.84□□□□□ -2.11
LIMS1P48059 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.84□□□□□ -2.11
LIMS1P48059 AC133485.1-201ENST00000567176 124 ntBASIC1.84□□□□□ -2.11
LIMS1P48059 AC015688.6-201ENST00000577737 104 ntBASIC1.84□□□□□ -2.11
LIMS1P48059 AL096861.1-201ENST00000610899 123 ntBASIC1.84□□□□□ -2.11
LIMS1P48059 AL627230.6-201ENST00000611129 280 ntBASIC1.84□□□□□ -2.11
LIMS1P48059 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.84□□□□□ -2.11
LIMS1P48059 RNA5SP259-201ENST00000365541 109 ntBASIC1.83□□□□□ -2.12
LIMS1P48059 RNU6-1296P-201ENST00000383879 107 ntBASIC1.83□□□□□ -2.12
LIMS1P48059 RNU6-439P-201ENST00000384188 106 ntBASIC1.83□□□□□ -2.12
LIMS1P48059 RPS29P11-201ENST00000496507 171 ntBASIC1.83□□□□□ -2.12
LIMS1P48059 AC019288.1-201ENST00000557918 224 ntBASIC1.83□□□□□ -2.12
LIMS1P48059 MTND5P40-201ENST00000559945 246 ntBASIC1.83□□□□□ -2.12
LIMS1P48059 AL096840.1-201ENST00000603287 93 ntBASIC1.83□□□□□ -2.12
LIMS1P48059 AL357312.1-201ENST00000603879 298 ntBASIC1.83□□□□□ -2.12
LIMS1P48059 AP000648.3-201ENST00000623539 4507 ntBASIC1.82□□□□□ -2.12
LIMS1P48059 Y_RNA.316-201ENST00000365118 111 ntBASIC1.82□□□□□ -2.12
LIMS1P48059 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
LIMS1P48059 RNA5SP212-201ENST00000391223 107 ntBASIC1.82□□□□□ -2.12
LIMS1P48059 RNA5SP489-201ENST00000410986 109 ntBASIC1.82□□□□□ -2.12
LIMS1P48059 snoU13.25-201ENST00000458945 104 ntBASIC1.82□□□□□ -2.12
LIMS1P48059 AP003716.2-201ENST00000528260 108 ntBASIC1.82□□□□□ -2.12
LIMS1P48059 SNORA77B-201ENST00000578179 125 ntBASIC1.82□□□□□ -2.12
LIMS1P48059 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
LIMS1P48059 Y_RNA.168-201ENST00000363740 102 ntBASIC1.81□□□□□ -2.12
LIMS1P48059 RNU6-652P-201ENST00000365488 107 ntBASIC1.81□□□□□ -2.12
LIMS1P48059 RNU6-524P-201ENST00000384270 107 ntBASIC1.81□□□□□ -2.12
LIMS1P48059 MIR519C-201ENST00000385053 87 ntBASIC1.81□□□□□ -2.12
LIMS1P48059 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
LIMS1P48059 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
LIMS1P48059 AC027119.1-201ENST00000440877 241 ntBASIC1.81□□□□□ -2.12
LIMS1P48059 AC087499.7-201ENST00000441958 109 ntBASIC1.81□□□□□ -2.12
LIMS1P48059 RNU6-922P-201ENST00000516753 99 ntBASIC1.81□□□□□ -2.12
LIMS1P48059 AC138749.4-201ENST00000563970 127 ntBASIC1.81□□□□□ -2.12
LIMS1P48059 MIR4264-201ENST00000583520 66 ntBASIC1.81□□□□□ -2.12
LIMS1P48059 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.81□□□□□ -2.12
LIMS1P48059 MIR6740-201ENST00000618268 113 ntBASIC1.81□□□□□ -2.12
LIMS1P48059 AC008163.1-202ENST00000636004 2889 ntBASIC1.81□□□□□ -2.12
LIMS1P48059 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
LIMS1P48059 MIR30D-201ENST00000362283 70 ntBASIC1.8□□□□□ -2.12
LIMS1P48059 Y_RNA.94-201ENST00000363068 106 ntBASIC1.8□□□□□ -2.12
LIMS1P48059 MIR588-201ENST00000384900 83 ntBASIC1.8□□□□□ -2.12
LIMS1P48059 MT-TN-201ENST00000387400 73 ntBASIC1.8□□□□□ -2.12
LIMS1P48059 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
LIMS1P48059 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.8□□□□□ -2.12
LIMS1P48059 RN7SL274P-201ENST00000492268 272 ntBASIC1.8□□□□□ -2.12
LIMS1P48059 RNA5SP364-201ENST00000516938 78 ntBASIC1.8□□□□□ -2.12
LIMS1P48059 AC090897.1-201ENST00000580909 226 ntBASIC1.8□□□□□ -2.12
LIMS1P48059 AP000753.3-201ENST00000604083 169 ntBASIC1.8□□□□□ -2.12
LIMS1P48059 AC012493.3-201ENST00000604494 112 ntBASIC1.8□□□□□ -2.12
LIMS1P48059 Y_RNA.783-201ENST00000613546 102 ntBASIC1.8□□□□□ -2.12
LIMS1P48059 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.8□□□□□ -2.12
LIMS1P48059 RNA5SP276-201ENST00000362580 94 ntBASIC1.79□□□□□ -2.12
LIMS1P48059 RNA5SP99-201ENST00000364020 114 ntBASIC1.79□□□□□ -2.12
LIMS1P48059 SNORA64-201ENST00000384674 134 ntBASIC1.79□□□□□ -2.12
LIMS1P48059 RNU4-83P-201ENST00000410863 133 ntBASIC1.79□□□□□ -2.12
LIMS1P48059 HSPE1P24-201ENST00000450782 238 ntBASIC1.79□□□□□ -2.12
LIMS1P48059 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.79□□□□□ -2.12
LIMS1P48059 GHRLOS.1-201ENST00000610995 70 ntBASIC1.79□□□□□ -2.12
LIMS1P48059 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.79□□□□□ -2.12
LIMS1P48059 ZNF355P-201ENST00000427301 3216 ntBASIC1.78□□□□□ -2.12
LIMS1P48059 RNU6-396P-201ENST00000365369 105 ntBASIC1.78□□□□□ -2.12
LIMS1P48059 SNORA26.9-201ENST00000391322 122 ntBASIC1.78□□□□□ -2.12
LIMS1P48059 AC093729.1-201ENST00000513074 128 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 165.7 ms