Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 AC098479.1-201ENST00000609225 154 ntBASIC-0.56□□□□□ -2.5
RFC3P40938 MIR4788-201ENST00000639104 80 ntBASIC-0.56□□□□□ -2.5
RFC3P40938 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-0.57□□□□□ -2.5
RFC3P40938 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.57□□□□□ -2.5
RFC3P40938 RNA5SP368-201ENST00000364298 116 ntBASIC-0.57□□□□□ -2.5
RFC3P40938 RNU6-728P-201ENST00000365375 104 ntBASIC-0.57□□□□□ -2.5
RFC3P40938 Y_RNA.366-201ENST00000365540 102 ntBASIC-0.57□□□□□ -2.5
RFC3P40938 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.57□□□□□ -2.5
RFC3P40938 MIR876-201ENST00000401147 81 ntBASIC-0.57□□□□□ -2.5
RFC3P40938 SNORD2.1-201ENST00000458762 69 ntBASIC-0.57□□□□□ -2.5
RFC3P40938 RNU6-1143P-201ENST00000516125 104 ntBASIC-0.57□□□□□ -2.5
RFC3P40938 RNY3P15-201ENST00000516297 97 ntBASIC-0.57□□□□□ -2.5
RFC3P40938 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-0.57□□□□□ -2.5
RFC3P40938 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.57□□□□□ -2.5
RFC3P40938 Y_RNA.117-201ENST00000363294 101 ntBASIC-0.58□□□□□ -2.5
RFC3P40938 RNU6-1283P-201ENST00000365314 105 ntBASIC-0.58□□□□□ -2.5
RFC3P40938 Y_RNA.470-201ENST00000384307 117 ntBASIC-0.58□□□□□ -2.5
RFC3P40938 RNA5SP144-201ENST00000410846 116 ntBASIC-0.58□□□□□ -2.5
RFC3P40938 Z95118.1-201ENST00000421372 247 ntBASIC-0.58□□□□□ -2.5
RFC3P40938 RNU6-561P-201ENST00000516222 102 ntBASIC-0.58□□□□□ -2.5
RFC3P40938 RNU6-1338P-201ENST00000516328 91 ntBASIC-0.58□□□□□ -2.5
RFC3P40938 RNU7-10P-201ENST00000607194 63 ntBASIC-0.58□□□□□ -2.5
RFC3P40938 AL162726.3-218ENST00000636401 95 ntBASIC-0.58□□□□□ -2.5
RFC3P40938 SNORD115-2-201ENST00000362842 82 ntBASIC-0.59□□□□□ -2.5
RFC3P40938 Y_RNA.84-201ENST00000363011 104 ntBASIC-0.59□□□□□ -2.5
RFC3P40938 SNORD95.1-201ENST00000364099 68 ntBASIC-0.59□□□□□ -2.5
RFC3P40938 SNORD115-20-201ENST00000365099 82 ntBASIC-0.59□□□□□ -2.5
RFC3P40938 RNU6-806P-201ENST00000365147 105 ntBASIC-0.59□□□□□ -2.5
RFC3P40938 SNORD42.2-201ENST00000365570 69 ntBASIC-0.59□□□□□ -2.5
RFC3P40938 RNU6-381P-201ENST00000391259 108 ntBASIC-0.59□□□□□ -2.5
RFC3P40938 RNA5SP25-201ENST00000410815 110 ntBASIC-0.59□□□□□ -2.5
RFC3P40938 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-0.59□□□□□ -2.5
RFC3P40938 RNU7-113P-201ENST00000459273 62 ntBASIC-0.59□□□□□ -2.5
RFC3P40938 AC082651.2-201ENST00000496833 166 ntBASIC-0.59□□□□□ -2.5
RFC3P40938 RNU7-137P-201ENST00000516788 62 ntBASIC-0.59□□□□□ -2.5
RFC3P40938 MIR3681-201ENST00000580089 72 ntBASIC-0.59□□□□□ -2.5
RFC3P40938 AC084368.1-201ENST00000620935 65 ntBASIC-0.59□□□□□ -2.5
RFC3P40938 RNY1P2-201ENST00000364820 117 ntBASIC-0.6□□□□□ -2.51
RFC3P40938 RNY1P6-201ENST00000384193 109 ntBASIC-0.6□□□□□ -2.51
RFC3P40938 RNU6-429P-201ENST00000384582 108 ntBASIC-0.6□□□□□ -2.51
RFC3P40938 SNORD110-201ENST00000408189 75 ntBASIC-0.6□□□□□ -2.51
RFC3P40938 AC006210.1-201ENST00000424882 111 ntBASIC-0.6□□□□□ -2.51
RFC3P40938 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC-0.6□□□□□ -2.51
RFC3P40938 SNORD116-25-201ENST00000516517 92 ntBASIC-0.6□□□□□ -2.51
RFC3P40938 RNU6-1149P-201ENST00000516810 97 ntBASIC-0.6□□□□□ -2.51
RFC3P40938 SCARNA24.2-201ENST00000516968 130 ntBASIC-0.6□□□□□ -2.51
RFC3P40938 AC096720.1-201ENST00000604441 183 ntBASIC-0.6□□□□□ -2.51
RFC3P40938 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-0.6□□□□□ -2.51
RFC3P40938 AL391099.1-201ENST00000624635 187 ntBASIC-0.6□□□□□ -2.51
RFC3P40938 MIR369-201ENST00000362155 70 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 Y_RNA.44-201ENST00000362676 108 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 Y_RNA.82-201ENST00000363000 102 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 Y_RNA.92-201ENST00000363043 102 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 SNORD114-10-201ENST00000363409 72 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 RNU6-509P-201ENST00000363519 107 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 RNU4-84P-201ENST00000364200 139 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 Y_RNA.235-201ENST00000364412 102 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 Y_RNA.306-201ENST00000365015 102 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 Y_RNA.312-201ENST00000365089 102 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 Y_RNA.322-201ENST00000365151 102 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 RNU6-449P-201ENST00000383914 107 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 RNU6-735P-201ENST00000410612 107 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 Y_RNA.650-201ENST00000459002 102 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 AC114755.3-201ENST00000481111 251 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 MTND3P22-201ENST00000510932 243 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 SNORD67.1-201ENST00000516618 108 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 RNA5SP33-201ENST00000516687 98 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 Y_RNA.777-201ENST00000516982 102 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 MIR4263-201ENST00000584745 83 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 Y_RNA.771-201ENST00000598668 102 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 AL356055.1-201ENST00000602528 446 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 Y_RNA.789-201ENST00000622480 102 ntBASIC-0.61□□□□□ -2.51
RFC3P40938 Y_RNA.26-201ENST00000362539 101 ntBASIC-0.62□□□□□ -2.51
RFC3P40938 Y_RNA.28-201ENST00000362554 111 ntBASIC-0.62□□□□□ -2.51
RFC3P40938 RNU6-978P-201ENST00000364371 103 ntBASIC-0.62□□□□□ -2.51
RFC3P40938 RNU6-480P-201ENST00000384332 107 ntBASIC-0.62□□□□□ -2.51
RFC3P40938 MIR624-201ENST00000385217 97 ntBASIC-0.62□□□□□ -2.51
RFC3P40938 MIR4795-201ENST00000584182 89 ntBASIC-0.62□□□□□ -2.51
RFC3P40938 AC105081.1-201ENST00000617727 106 ntBASIC-0.62□□□□□ -2.51
RFC3P40938 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-0.62□□□□□ -2.51
RFC3P40938 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.62□□□□□ -2.51
RFC3P40938 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.63□□□□□ -2.51
RFC3P40938 SNORD114-11-201ENST00000363738 75 ntBASIC-0.63□□□□□ -2.51
RFC3P40938 SNORA32-201ENST00000384072 121 ntBASIC-0.63□□□□□ -2.51
RFC3P40938 MIR224-201ENST00000384889 81 ntBASIC-0.63□□□□□ -2.51
RFC3P40938 SNORA25.13-201ENST00000516395 103 ntBASIC-0.63□□□□□ -2.51
RFC3P40938 NAMPTP3-201ENST00000569273 224 ntBASIC-0.63□□□□□ -2.51
RFC3P40938 Y_RNA.64-201ENST00000362845 102 ntBASIC-0.64□□□□□ -2.51
RFC3P40938 Y_RNA.120-201ENST00000363304 110 ntBASIC-0.64□□□□□ -2.51
RFC3P40938 RNU6-103P-201ENST00000363686 107 ntBASIC-0.64□□□□□ -2.51
RFC3P40938 Y_RNA.210-201ENST00000364161 110 ntBASIC-0.64□□□□□ -2.51
RFC3P40938 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.64□□□□□ -2.51
RFC3P40938 MIR635-201ENST00000384830 98 ntBASIC-0.64□□□□□ -2.51
RFC3P40938 AC113618.1-201ENST00000416747 285 ntBASIC-0.64□□□□□ -2.51
RFC3P40938 BX276092.1-201ENST00000427368 251 ntBASIC-0.64□□□□□ -2.51
RFC3P40938 RNA5SP484-201ENST00000458857 111 ntBASIC-0.64□□□□□ -2.51
RFC3P40938 MIR4436A-201ENST00000585278 85 ntBASIC-0.64□□□□□ -2.51
RFC3P40938 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-0.64□□□□□ -2.51
RFC3P40938 AL359881.1-201ENST00000602916 267 ntBASIC-0.64□□□□□ -2.51
RFC3P40938 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.65□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms