Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 Y_RNA.105-201ENST00000363182 111 ntBASIC-1□□□□□ -2.57
HLA-DMBP28068 Y_RNA.279-201ENST00000364763 95 ntBASIC-1□□□□□ -2.57
HLA-DMBP28068 Y_RNA.416-201ENST00000384014 113 ntBASIC-1□□□□□ -2.57
HLA-DMBP28068 Y_RNA.514-201ENST00000384528 112 ntBASIC-1□□□□□ -2.57
HLA-DMBP28068 Y_RNA.516-201ENST00000384541 124 ntBASIC-1□□□□□ -2.57
HLA-DMBP28068 Y_RNA.602-201ENST00000410535 92 ntBASIC-1□□□□□ -2.57
HLA-DMBP28068 RNU6-1133P-201ENST00000410963 100 ntBASIC-1□□□□□ -2.57
HLA-DMBP28068 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-1□□□□□ -2.57
HLA-DMBP28068 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC-1□□□□□ -2.57
HLA-DMBP28068 RNU7-113P-201ENST00000459273 62 ntBASIC-1□□□□□ -2.57
HLA-DMBP28068 RNU6-881P-201ENST00000516813 102 ntBASIC-1□□□□□ -2.57
HLA-DMBP28068 RNU6-570P-201ENST00000517051 105 ntBASIC-1□□□□□ -2.57
HLA-DMBP28068 YWHAEP2-201ENST00000580066 112 ntBASIC-1□□□□□ -2.57
HLA-DMBP28068 MIR376A1-201ENST00000616574 68 ntBASIC-1□□□□□ -2.57
HLA-DMBP28068 Y_RNA.3-201ENST00000362331 103 ntBASIC-1.01□□□□□ -2.57
HLA-DMBP28068 SNORA32-201ENST00000384072 121 ntBASIC-1.01□□□□□ -2.57
HLA-DMBP28068 RNU6-662P-201ENST00000384253 104 ntBASIC-1.01□□□□□ -2.57
HLA-DMBP28068 MT-TT-201ENST00000387460 66 ntBASIC-1.01□□□□□ -2.57
HLA-DMBP28068 SNORD115-46-201ENST00000390982 71 ntBASIC-1.01□□□□□ -2.57
HLA-DMBP28068 MIR548I2-201ENST00000408348 149 ntBASIC-1.01□□□□□ -2.57
HLA-DMBP28068 RNA5SP33-201ENST00000516687 98 ntBASIC-1.01□□□□□ -2.57
HLA-DMBP28068 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-1.01□□□□□ -2.57
HLA-DMBP28068 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.02□□□□□ -2.57
HLA-DMBP28068 RNU6-900P-201ENST00000384498 102 ntBASIC-1.02□□□□□ -2.57
HLA-DMBP28068 MIR519E-201ENST00000385075 84 ntBASIC-1.02□□□□□ -2.57
HLA-DMBP28068 MIR548F1-201ENST00000408667 84 ntBASIC-1.02□□□□□ -2.57
HLA-DMBP28068 Y_RNA.659-201ENST00000515994 113 ntBASIC-1.02□□□□□ -2.57
HLA-DMBP28068 SCARNA21.1-201ENST00000515996 128 ntBASIC-1.02□□□□□ -2.57
HLA-DMBP28068 RNU6-718P-201ENST00000516166 105 ntBASIC-1.02□□□□□ -2.57
HLA-DMBP28068 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-1.02□□□□□ -2.57
HLA-DMBP28068 MIR548AE1-201ENST00000583292 70 ntBASIC-1.02□□□□□ -2.57
HLA-DMBP28068 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-1.02□□□□□ -2.57
HLA-DMBP28068 AC104985.2-201ENST00000620598 500 ntBASIC-1.02□□□□□ -2.57
HLA-DMBP28068 RNU6-1260P-201ENST00000362944 107 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 Y_RNA.120-201ENST00000363304 110 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 Y_RNA.152-201ENST00000363578 100 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 RNU4-36P-201ENST00000364294 144 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 Y_RNA.252-201ENST00000364556 101 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 SNORD81.2-201ENST00000365153 76 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 Y_RNA.445-201ENST00000384168 102 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 SNORD116-29-201ENST00000384516 83 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 MIR617-201ENST00000385030 97 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 MIR204-201ENST00000385200 110 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 Y_RNA.581-201ENST00000391017 97 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 RNY4P36-201ENST00000391116 96 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 Y_RNA.809-201ENST00000516058 95 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 SNORA27.4-201ENST00000516650 95 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 MIR548AG2-201ENST00000581228 64 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 AC092794.1-201ENST00000612734 582 ntBASIC-1.03□□□□□ -2.57
HLA-DMBP28068 RNU6-290P-201ENST00000365212 101 ntBASIC-1.04□□□□□ -2.58
HLA-DMBP28068 RNU6-326P-201ENST00000365480 107 ntBASIC-1.04□□□□□ -2.58
HLA-DMBP28068 SNORD56B-201ENST00000384713 71 ntBASIC-1.04□□□□□ -2.58
HLA-DMBP28068 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.04□□□□□ -2.58
HLA-DMBP28068 AL606845.1-201ENST00000404881 255 ntBASIC-1.04□□□□□ -2.58
HLA-DMBP28068 AL445193.1-201ENST00000441183 141 ntBASIC-1.04□□□□□ -2.58
HLA-DMBP28068 SCARNA17-201ENST00000516183 144 ntBASIC-1.04□□□□□ -2.58
HLA-DMBP28068 MIR4500-201ENST00000579472 76 ntBASIC-1.04□□□□□ -2.58
HLA-DMBP28068 MIR4280-201ENST00000582178 76 ntBASIC-1.04□□□□□ -2.58
HLA-DMBP28068 AC006504.6-201ENST00000590142 199 ntBASIC-1.04□□□□□ -2.58
HLA-DMBP28068 MTND4LP32-201ENST00000636111 270 ntBASIC-1.04□□□□□ -2.58
HLA-DMBP28068 SNORA25.1-201ENST00000362326 128 ntBASIC-1.05□□□□□ -2.58
HLA-DMBP28068 Y_RNA.80-201ENST00000362996 102 ntBASIC-1.05□□□□□ -2.58
HLA-DMBP28068 Y_RNA.199-201ENST00000364014 102 ntBASIC-1.05□□□□□ -2.58
HLA-DMBP28068 Y_RNA.259-201ENST00000364619 101 ntBASIC-1.05□□□□□ -2.58
HLA-DMBP28068 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.05□□□□□ -2.58
HLA-DMBP28068 RNY1P6-201ENST00000384193 109 ntBASIC-1.05□□□□□ -2.58
HLA-DMBP28068 RNU6-154P-201ENST00000384306 106 ntBASIC-1.05□□□□□ -2.58
HLA-DMBP28068 Y_RNA.485-201ENST00000384395 102 ntBASIC-1.05□□□□□ -2.58
HLA-DMBP28068 MIR616-201ENST00000385293 97 ntBASIC-1.05□□□□□ -2.58
HLA-DMBP28068 SNORA13-201ENST00000458790 133 ntBASIC-1.05□□□□□ -2.58
HLA-DMBP28068 RNU7-195P-201ENST00000458793 62 ntBASIC-1.05□□□□□ -2.58
HLA-DMBP28068 MIR6738-201ENST00000619620 64 ntBASIC-1.05□□□□□ -2.58
HLA-DMBP28068 Y_RNA.183-201ENST00000363882 113 ntBASIC-1.06□□□□□ -2.58
HLA-DMBP28068 Y_RNA.394-201ENST00000383942 103 ntBASIC-1.06□□□□□ -2.58
HLA-DMBP28068 RNU6-524P-201ENST00000384270 107 ntBASIC-1.06□□□□□ -2.58
HLA-DMBP28068 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.06□□□□□ -2.58
HLA-DMBP28068 Y_RNA.562-201ENST00000384695 113 ntBASIC-1.06□□□□□ -2.58
HLA-DMBP28068 RNU7-152P-201ENST00000458982 64 ntBASIC-1.06□□□□□ -2.58
HLA-DMBP28068 AC082651.2-201ENST00000496833 166 ntBASIC-1.06□□□□□ -2.58
HLA-DMBP28068 RNU6-1149P-201ENST00000516810 97 ntBASIC-1.06□□□□□ -2.58
HLA-DMBP28068 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-1.06□□□□□ -2.58
HLA-DMBP28068 MIR548AE2-201ENST00000583456 67 ntBASIC-1.06□□□□□ -2.58
HLA-DMBP28068 UBE2WP1-201ENST00000362030 340 ntBASIC-1.07□□□□□ -2.58
HLA-DMBP28068 SNORD115-44-201ENST00000365391 82 ntBASIC-1.07□□□□□ -2.58
HLA-DMBP28068 RNU6-211P-201ENST00000384047 107 ntBASIC-1.07□□□□□ -2.58
HLA-DMBP28068 SNORD116-2-201ENST00000384274 95 ntBASIC-1.07□□□□□ -2.58
HLA-DMBP28068 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.07□□□□□ -2.58
HLA-DMBP28068 Y_RNA.541-201ENST00000384640 113 ntBASIC-1.07□□□□□ -2.58
HLA-DMBP28068 SNORD116-6-201ENST00000384711 96 ntBASIC-1.07□□□□□ -2.58
HLA-DMBP28068 SNORD63B-201ENST00000411005 70 ntBASIC-1.07□□□□□ -2.58
HLA-DMBP28068 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-1.07□□□□□ -2.58
HLA-DMBP28068 RNU6-453P-201ENST00000516819 85 ntBASIC-1.07□□□□□ -2.58
HLA-DMBP28068 Y_RNA.718-201ENST00000517110 102 ntBASIC-1.07□□□□□ -2.58
HLA-DMBP28068 MIR4460-201ENST00000577862 86 ntBASIC-1.07□□□□□ -2.58
HLA-DMBP28068 AC084782.3-201ENST00000612282 578 ntBASIC-1.07□□□□□ -2.58
HLA-DMBP28068 MIR6851-201ENST00000617060 67 ntBASIC-1.07□□□□□ -2.58
HLA-DMBP28068 MIR20A-201ENST00000362279 71 ntBASIC-1.08□□□□□ -2.58
HLA-DMBP28068 RNU6-170P-201ENST00000362832 104 ntBASIC-1.08□□□□□ -2.58
HLA-DMBP28068 Y_RNA.176-201ENST00000363815 109 ntBASIC-1.08□□□□□ -2.58
HLA-DMBP28068 snoU2_19.4-201ENST00000364329 80 ntBASIC-1.08□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms