Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MIR18B-201ENST00000454574 71 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 AC067940.1-201ENST00000458411 300 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 RN7SKP19-201ENST00000516016 252 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 RNA5SP33-201ENST00000516687 98 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 AC022523.2-201ENST00000561045 150 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 MIR548AE2-201ENST00000583456 67 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 MIR4653-201ENST00000585107 83 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.72□□□□□ -2.29
HOXD4P09016 MIR6513-201ENST00000621188 64 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.72□□□□□ -2.29
HOXD4P09016 HSBP1P2-201ENST00000299671 229 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 RNU6-235P-201ENST00000362644 107 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 RNU6-647P-201ENST00000364243 107 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 RNU6-1335P-201ENST00000365426 107 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 MIR100-201ENST00000385259 80 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 MT-TF-201ENST00000387314 71 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 RNU7-35P-201ENST00000517174 62 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 AC133485.1-201ENST00000567176 124 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 AC138907.6-201ENST00000568401 126 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 AC020891.4-201ENST00000605745 93 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 AC023934.1-201ENST00000574529 2389 ntBASIC0.71□□□□□ -2.3
HOXD4P09016 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
HOXD4P09016 MIR1-1-201ENST00000362147 71 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 RNU6-704P-201ENST00000364162 103 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 RNY1P13-201ENST00000365030 105 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 SNORD50.2-201ENST00000365465 70 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 RNU6-1104P-201ENST00000384723 104 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 Y_RNA.617-201ENST00000410920 90 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 RNU6-1211P-201ENST00000459179 105 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 RNU7-185P-201ENST00000459215 60 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 RNA5SP255-201ENST00000516370 107 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 RNU6-781P-201ENST00000516377 101 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 RNU6-1110P-201ENST00000516462 101 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 RNU6-971P-201ENST00000516920 106 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 MIR6835-201ENST00000621552 64 ntBASIC0.7□□□□□ -2.3
HOXD4P09016 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
HOXD4P09016 MIR608-201ENST00000384820 100 ntBASIC0.69□□□□□ -2.3
HOXD4P09016 MIR1257-201ENST00000408490 117 ntBASIC0.69□□□□□ -2.3
HOXD4P09016 RNU6-1086P-201ENST00000410930 100 ntBASIC0.69□□□□□ -2.3
HOXD4P09016 U7.7-201ENST00000459276 60 ntBASIC0.69□□□□□ -2.3
HOXD4P09016 MIR1270-201ENST00000459320 83 ntBASIC0.69□□□□□ -2.3
HOXD4P09016 RNU7-79P-201ENST00000516082 62 ntBASIC0.69□□□□□ -2.3
HOXD4P09016 ACA64.5-201ENST00000516207 127 ntBASIC0.69□□□□□ -2.3
HOXD4P09016 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.69□□□□□ -2.3
HOXD4P09016 MIR4676-201ENST00000583078 72 ntBASIC0.69□□□□□ -2.3
HOXD4P09016 AL589743.1-201ENST00000551932 2712 ntBASIC0.69□□□□□ -2.3
HOXD4P09016 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.69□□□□□ -2.3
HOXD4P09016 MIR539-201ENST00000365690 78 ntBASIC0.68□□□□□ -2.3
HOXD4P09016 RNU6-949P-201ENST00000384040 107 ntBASIC0.68□□□□□ -2.3
HOXD4P09016 MT-TI-201ENST00000387365 69 ntBASIC0.68□□□□□ -2.3
HOXD4P09016 U8.15-201ENST00000390947 134 ntBASIC0.68□□□□□ -2.3
HOXD4P09016 MIR1263-201ENST00000408324 86 ntBASIC0.68□□□□□ -2.3
HOXD4P09016 RNU6-977P-201ENST00000516411 103 ntBASIC0.68□□□□□ -2.3
HOXD4P09016 MIR4804-201ENST00000581683 73 ntBASIC0.68□□□□□ -2.3
HOXD4P09016 AL590095.2-201ENST00000604136 117 ntBASIC0.68□□□□□ -2.3
HOXD4P09016 MIR520F-201ENST00000384824 87 ntBASIC0.67□□□□□ -2.3
HOXD4P09016 MIR193B-201ENST00000384907 83 ntBASIC0.67□□□□□ -2.3
HOXD4P09016 MIR125B2-201ENST00000385128 89 ntBASIC0.67□□□□□ -2.3
HOXD4P09016 MIR936-201ENST00000401264 98 ntBASIC0.67□□□□□ -2.3
HOXD4P09016 RNU4-69P-201ENST00000410677 143 ntBASIC0.67□□□□□ -2.3
HOXD4P09016 AC096949.1-201ENST00000412047 152 ntBASIC0.67□□□□□ -2.3
HOXD4P09016 AL606490.4-201ENST00000423117 127 ntBASIC0.67□□□□□ -2.3
HOXD4P09016 RPL39P25-201ENST00000449384 154 ntBASIC0.67□□□□□ -2.3
HOXD4P09016 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.67□□□□□ -2.3
HOXD4P09016 PSMC1P5-201ENST00000512850 177 ntBASIC0.67□□□□□ -2.3
HOXD4P09016 AL136317.1-201ENST00000612653 226 ntBASIC0.67□□□□□ -2.3
HOXD4P09016 Y_RNA.218-201ENST00000364218 104 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 Y_RNA.299-201ENST00000364973 94 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 SNORD58C-201ENST00000365223 64 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
HOXD4P09016 Y_RNA.525-201ENST00000384570 113 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 MIRLET7F2-201ENST00000385277 83 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 SNORD105-201ENST00000386910 85 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 AL603908.1-201ENST00000406098 201 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 SNORD93-201ENST00000408813 74 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 RNU7-107P-201ENST00000459121 61 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 RNU6-772P-201ENST00000516042 105 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 RNU6-1061P-201ENST00000516530 99 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 SNORD67.1-201ENST00000516618 108 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 RNU6-1234P-201ENST00000516877 103 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 MIR1273G-201ENST00000577677 100 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 AL359881.1-201ENST00000602916 267 ntBASIC0.66□□□□□ -2.3
HOXD4P09016 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.66□□□□□ -2.3
HOXD4P09016 MIR508-201ENST00000384857 115 ntBASIC0.65□□□□□ -2.31
HOXD4P09016 MIR520H-201ENST00000385126 88 ntBASIC0.65□□□□□ -2.31
HOXD4P09016 MIR938-201ENST00000401216 83 ntBASIC0.65□□□□□ -2.31
HOXD4P09016 SNORD99-201ENST00000408612 74 ntBASIC0.65□□□□□ -2.31
HOXD4P09016 RNA5SP136-201ENST00000410906 107 ntBASIC0.65□□□□□ -2.31
HOXD4P09016 RNU7-137P-201ENST00000516788 62 ntBASIC0.65□□□□□ -2.31
HOXD4P09016 AC025627.3-201ENST00000582078 182 ntBASIC0.65□□□□□ -2.31
HOXD4P09016 Y_RNA.198-201ENST00000364013 98 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 Y_RNA.528-201ENST00000384575 108 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 MIR605-201ENST00000385078 83 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 Y_RNA.588-201ENST00000391254 102 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 RNU6-735P-201ENST00000410612 107 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 RNU4-83P-201ENST00000410863 133 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 165.8 ms