Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 MIR563-201ENST00000385080 79 ntBASIC1.54□□□□□ -2.16
RAPGEF3O95398 RNU6-1086P-201ENST00000410930 100 ntBASIC1.54□□□□□ -2.16
RAPGEF3O95398 RNU7-62P-201ENST00000458856 62 ntBASIC1.54□□□□□ -2.16
RAPGEF3O95398 MIR4714-201ENST00000580728 77 ntBASIC1.54□□□□□ -2.16
RAPGEF3O95398 RNA5SP327-201ENST00000362494 101 ntBASIC1.53□□□□□ -2.16
RAPGEF3O95398 RNU4-38P-201ENST00000364472 129 ntBASIC1.53□□□□□ -2.16
RAPGEF3O95398 SNORA18-201ENST00000384416 132 ntBASIC1.53□□□□□ -2.16
RAPGEF3O95398 RNU6-1104P-201ENST00000384723 104 ntBASIC1.53□□□□□ -2.16
RAPGEF3O95398 MIR532-201ENST00000385025 91 ntBASIC1.53□□□□□ -2.16
RAPGEF3O95398 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
RAPGEF3O95398 SNORD111-201ENST00000408139 94 ntBASIC1.53□□□□□ -2.16
RAPGEF3O95398 RNA5SP237-201ENST00000410414 113 ntBASIC1.53□□□□□ -2.16
RAPGEF3O95398 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.53□□□□□ -2.16
RAPGEF3O95398 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.53□□□□□ -2.16
RAPGEF3O95398 AC022523.2-201ENST00000561045 150 ntBASIC1.53□□□□□ -2.16
RAPGEF3O95398 MIR6857-201ENST00000613267 93 ntBASIC1.53□□□□□ -2.16
RAPGEF3O95398 RNY4P6-201ENST00000363667 96 ntBASIC1.52□□□□□ -2.17
RAPGEF3O95398 RNU6-939P-201ENST00000384634 107 ntBASIC1.52□□□□□ -2.17
RAPGEF3O95398 RNU6-205P-201ENST00000390858 107 ntBASIC1.52□□□□□ -2.17
RAPGEF3O95398 RNU7-40P-201ENST00000516397 64 ntBASIC1.52□□□□□ -2.17
RAPGEF3O95398 RNA5SP330-201ENST00000517096 96 ntBASIC1.52□□□□□ -2.17
RAPGEF3O95398 MIR7974-201ENST00000615835 79 ntBASIC1.52□□□□□ -2.17
RAPGEF3O95398 Y_RNA.291-201ENST00000364886 113 ntBASIC1.51□□□□□ -2.17
RAPGEF3O95398 Y_RNA.353-201ENST00000365440 108 ntBASIC1.51□□□□□ -2.17
RAPGEF3O95398 SNORA2B-201ENST00000384583 137 ntBASIC1.51□□□□□ -2.17
RAPGEF3O95398 SNORD77B-201ENST00000391112 67 ntBASIC1.51□□□□□ -2.17
RAPGEF3O95398 RNU6-1165P-201ENST00000410119 107 ntBASIC1.51□□□□□ -2.17
RAPGEF3O95398 RNU7-35P-201ENST00000517174 62 ntBASIC1.51□□□□□ -2.17
RAPGEF3O95398 AC036111.3-201ENST00000526389 112 ntBASIC1.51□□□□□ -2.17
RAPGEF3O95398 MIR548AE2-201ENST00000583456 67 ntBASIC1.51□□□□□ -2.17
RAPGEF3O95398 AC106800.4-201ENST00000614905 153 ntBASIC1.51□□□□□ -2.17
RAPGEF3O95398 AL662814.1-201ENST00000617364 121 ntBASIC1.51□□□□□ -2.17
RAPGEF3O95398 MIR6740-201ENST00000618268 113 ntBASIC1.51□□□□□ -2.17
RAPGEF3O95398 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
RAPGEF3O95398 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
RAPGEF3O95398 MT-TF-201ENST00000387314 71 ntBASIC1.5□□□□□ -2.17
RAPGEF3O95398 RNA5SP95-201ENST00000410319 137 ntBASIC1.5□□□□□ -2.17
RAPGEF3O95398 MIR18B-201ENST00000454574 71 ntBASIC1.5□□□□□ -2.17
RAPGEF3O95398 RNA5SP121-201ENST00000516537 101 ntBASIC1.5□□□□□ -2.17
RAPGEF3O95398 AL670379.3-201ENST00000605040 251 ntBASIC1.5□□□□□ -2.17
RAPGEF3O95398 AC012676.2-201ENST00000619258 186 ntBASIC1.5□□□□□ -2.17
RAPGEF3O95398 AC027335.2-201ENST00000624030 375 ntBASIC1.5□□□□□ -2.17
RAPGEF3O95398 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
RAPGEF3O95398 AC008163.1-202ENST00000636004 2889 ntBASIC1.49□□□□□ -2.17
RAPGEF3O95398 Y_RNA.258-201ENST00000364613 105 ntBASIC1.49□□□□□ -2.17
RAPGEF3O95398 MIR548A3-201ENST00000385297 97 ntBASIC1.49□□□□□ -2.17
RAPGEF3O95398 AC063976.4-201ENST00000421971 163 ntBASIC1.49□□□□□ -2.17
RAPGEF3O95398 Y_RNA.649-201ENST00000459077 103 ntBASIC1.49□□□□□ -2.17
RAPGEF3O95398 MIR4698-201ENST00000577795 80 ntBASIC1.49□□□□□ -2.17
RAPGEF3O95398 AC002429.1-201ENST00000437672 148 ntBASIC1.48□□□□□ -2.17
RAPGEF3O95398 RNU7-79P-201ENST00000516082 62 ntBASIC1.48□□□□□ -2.17
RAPGEF3O95398 SNORD33.1-201ENST00000516213 88 ntBASIC1.48□□□□□ -2.17
RAPGEF3O95398 RNU7-6P-201ENST00000516845 62 ntBASIC1.48□□□□□ -2.17
RAPGEF3O95398 AC141846.1-201ENST00000568348 142 ntBASIC1.48□□□□□ -2.17
RAPGEF3O95398 Y_RNA.273-201ENST00000364703 102 ntBASIC1.47□□□□□ -2.17
RAPGEF3O95398 RNU6-1237P-201ENST00000384777 107 ntBASIC1.47□□□□□ -2.17
RAPGEF3O95398 MIR19B1-201ENST00000384829 87 ntBASIC1.47□□□□□ -2.17
RAPGEF3O95398 MIR618-201ENST00000385287 98 ntBASIC1.47□□□□□ -2.17
RAPGEF3O95398 MT-TI-201ENST00000387365 69 ntBASIC1.47□□□□□ -2.17
RAPGEF3O95398 RNA5SP395-201ENST00000516567 118 ntBASIC1.47□□□□□ -2.17
RAPGEF3O95398 AL109933.3-201ENST00000619095 188 ntBASIC1.47□□□□□ -2.17
RAPGEF3O95398 MIR924-201ENST00000638017 53 ntBASIC1.47□□□□□ -2.17
RAPGEF3O95398 MIR30D-201ENST00000362283 70 ntBASIC1.46□□□□□ -2.18
RAPGEF3O95398 SNORA32-201ENST00000384072 121 ntBASIC1.46□□□□□ -2.18
RAPGEF3O95398 MIR548D2-201ENST00000384955 97 ntBASIC1.46□□□□□ -2.18
RAPGEF3O95398 RNA5SP476-201ENST00000516613 103 ntBASIC1.46□□□□□ -2.18
RAPGEF3O95398 MIR4679-2-201ENST00000578358 77 ntBASIC1.46□□□□□ -2.18
RAPGEF3O95398 MIR6513-201ENST00000621188 64 ntBASIC1.46□□□□□ -2.18
RAPGEF3O95398 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
RAPGEF3O95398 SNORD115-19-201ENST00000363098 82 ntBASIC1.45□□□□□ -2.18
RAPGEF3O95398 SNORD115-18-201ENST00000363293 82 ntBASIC1.45□□□□□ -2.18
RAPGEF3O95398 SNORD115-17-201ENST00000364612 82 ntBASIC1.45□□□□□ -2.18
RAPGEF3O95398 RNU6-1056P-201ENST00000383996 107 ntBASIC1.45□□□□□ -2.18
RAPGEF3O95398 RNU6-1064P-201ENST00000410626 104 ntBASIC1.45□□□□□ -2.18
RAPGEF3O95398 Y_RNA.629-201ENST00000411368 105 ntBASIC1.45□□□□□ -2.18
RAPGEF3O95398 AC023827.1-201ENST00000569247 97 ntBASIC1.45□□□□□ -2.18
RAPGEF3O95398 AC087741.2-201ENST00000619415 172 ntBASIC1.45□□□□□ -2.18
RAPGEF3O95398 RNU6-949P-201ENST00000384040 107 ntBASIC1.44□□□□□ -2.18
RAPGEF3O95398 RNU6-1144P-201ENST00000384247 104 ntBASIC1.44□□□□□ -2.18
RAPGEF3O95398 RNU6-476P-201ENST00000384726 107 ntBASIC1.44□□□□□ -2.18
RAPGEF3O95398 FAM71BP1-201ENST00000604431 523 ntBASIC1.44□□□□□ -2.18
RAPGEF3O95398 RNA5SP257-201ENST00000363023 116 ntBASIC1.43□□□□□ -2.18
RAPGEF3O95398 RNY1P13-201ENST00000365030 105 ntBASIC1.43□□□□□ -2.18
RAPGEF3O95398 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.43□□□□□ -2.18
RAPGEF3O95398 AC007012.1-201ENST00000567192 175 ntBASIC1.43□□□□□ -2.18
RAPGEF3O95398 SNORD114-10-201ENST00000363409 72 ntBASIC1.42□□□□□ -2.18
RAPGEF3O95398 MIR936-201ENST00000401264 98 ntBASIC1.42□□□□□ -2.18
RAPGEF3O95398 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.42□□□□□ -2.18
RAPGEF3O95398 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.42□□□□□ -2.18
RAPGEF3O95398 RNU6-735P-201ENST00000410612 107 ntBASIC1.42□□□□□ -2.18
RAPGEF3O95398 RPL39P25-201ENST00000449384 154 ntBASIC1.42□□□□□ -2.18
RAPGEF3O95398 MIR1270-201ENST00000459320 83 ntBASIC1.42□□□□□ -2.18
RAPGEF3O95398 AC010487.4-201ENST00000637027 61 ntBASIC1.42□□□□□ -2.18
RAPGEF3O95398 RNU1-124P-201ENST00000363861 145 ntBASIC1.41□□□□□ -2.18
RAPGEF3O95398 RNU6-934P-201ENST00000365154 107 ntBASIC1.41□□□□□ -2.18
RAPGEF3O95398 SNORD116-21-201ENST00000384507 92 ntBASIC1.41□□□□□ -2.18
RAPGEF3O95398 RNU6-880P-201ENST00000384526 107 ntBASIC1.41□□□□□ -2.18
RAPGEF3O95398 MIR200A-201ENST00000384875 90 ntBASIC1.41□□□□□ -2.18
RAPGEF3O95398 RNU6-994P-201ENST00000410507 111 ntBASIC1.41□□□□□ -2.18
RAPGEF3O95398 MTND5P34-201ENST00000568888 325 ntBASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms