Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 MIR6082-201ENST00000613604 109 ntBASIC0.25□□□□□ -2.37
SIX3O95343 RNU6-349P-201ENST00000362402 107 ntBASIC0.24□□□□□ -2.37
SIX3O95343 Y_RNA.42-201ENST00000362660 108 ntBASIC0.24□□□□□ -2.37
SIX3O95343 Y_RNA.182-201ENST00000363880 111 ntBASIC0.24□□□□□ -2.37
SIX3O95343 SNORD49B-201ENST00000365172 72 ntBASIC0.24□□□□□ -2.37
SIX3O95343 RNU6-472P-201ENST00000384299 107 ntBASIC0.24□□□□□ -2.37
SIX3O95343 Y_RNA.521-201ENST00000384560 114 ntBASIC0.24□□□□□ -2.37
SIX3O95343 U8.15-201ENST00000390947 134 ntBASIC0.24□□□□□ -2.37
SIX3O95343 MIR1302-3-201ENST00000408128 138 ntBASIC0.24□□□□□ -2.37
SIX3O95343 RNU5E-9P-201ENST00000411164 104 ntBASIC0.24□□□□□ -2.37
SIX3O95343 AC073261.1-201ENST00000429409 121 ntBASIC0.24□□□□□ -2.37
SIX3O95343 Y_RNA.697-201ENST00000516776 113 ntBASIC0.24□□□□□ -2.37
SIX3O95343 AL117187.1-201ENST00000555482 181 ntBASIC0.24□□□□□ -2.37
SIX3O95343 MIR548AX-201ENST00000580117 73 ntBASIC0.24□□□□□ -2.37
SIX3O95343 MIR4768-201ENST00000585270 74 ntBASIC0.24□□□□□ -2.37
SIX3O95343 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.24□□□□□ -2.37
SIX3O95343 MIR8066-201ENST00000617280 78 ntBASIC0.24□□□□□ -2.37
SIX3O95343 SNORD44.1-201ENST00000363202 61 ntBASIC0.23□□□□□ -2.37
SIX3O95343 Y_RNA.174-201ENST00000363781 105 ntBASIC0.23□□□□□ -2.37
SIX3O95343 RNU6-46P-201ENST00000383860 107 ntBASIC0.23□□□□□ -2.37
SIX3O95343 MTND1P19-201ENST00000511780 315 ntBASIC0.23□□□□□ -2.37
SIX3O95343 RNU6-643P-201ENST00000384018 107 ntBASIC0.22□□□□□ -2.37
SIX3O95343 MIR548F4-201ENST00000408515 105 ntBASIC0.22□□□□□ -2.37
SIX3O95343 MIR4491-201ENST00000581087 68 ntBASIC0.22□□□□□ -2.37
SIX3O95343 U4.2-201ENST00000618561 85 ntBASIC0.22□□□□□ -2.37
SIX3O95343 RNU6-978P-201ENST00000364371 103 ntBASIC0.21□□□□□ -2.38
SIX3O95343 RNU6-949P-201ENST00000384040 107 ntBASIC0.21□□□□□ -2.38
SIX3O95343 MIR624-201ENST00000385217 97 ntBASIC0.21□□□□□ -2.38
SIX3O95343 SNORD127-201ENST00000458892 86 ntBASIC0.21□□□□□ -2.38
SIX3O95343 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
SIX3O95343 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.21□□□□□ -2.38
SIX3O95343 Y_RNA.121-201ENST00000363309 113 ntBASIC0.2□□□□□ -2.38
SIX3O95343 Y_RNA.477-201ENST00000384352 108 ntBASIC0.2□□□□□ -2.38
SIX3O95343 RNU6-1011P-201ENST00000384668 107 ntBASIC0.2□□□□□ -2.38
SIX3O95343 RNU6-535P-201ENST00000384722 107 ntBASIC0.2□□□□□ -2.38
SIX3O95343 RNU6-1086P-201ENST00000410930 100 ntBASIC0.2□□□□□ -2.38
SIX3O95343 RNA5SP227-201ENST00000516184 113 ntBASIC0.2□□□□□ -2.38
SIX3O95343 RNU6-135P-201ENST00000516769 101 ntBASIC0.2□□□□□ -2.38
SIX3O95343 RNA5SP268-201ENST00000516828 124 ntBASIC0.2□□□□□ -2.38
SIX3O95343 RNU6-765P-201ENST00000516916 99 ntBASIC0.2□□□□□ -2.38
SIX3O95343 MIR6841-201ENST00000637129 72 ntBASIC0.2□□□□□ -2.38
SIX3O95343 Y_RNA.556-201ENST00000384677 113 ntBASIC0.19□□□□□ -2.38
SIX3O95343 RNU6-863P-201ENST00000515989 104 ntBASIC0.19□□□□□ -2.38
SIX3O95343 RNU6-1194P-201ENST00000516208 104 ntBASIC0.19□□□□□ -2.38
SIX3O95343 MIR198-201ENST00000637333 62 ntBASIC0.19□□□□□ -2.38
SIX3O95343 MIR371B-201ENST00000638082 66 ntBASIC0.19□□□□□ -2.38
SIX3O95343 RNY1P6-201ENST00000384193 109 ntBASIC0.18□□□□□ -2.38
SIX3O95343 RNU6-1184P-201ENST00000384588 108 ntBASIC0.18□□□□□ -2.38
SIX3O95343 MTND2P23-201ENST00000422990 651 ntBASIC0.18□□□□□ -2.38
SIX3O95343 RNU7-113P-201ENST00000459273 62 ntBASIC0.18□□□□□ -2.38
SIX3O95343 SNORA31.14-201ENST00000516728 116 ntBASIC0.18□□□□□ -2.38
SIX3O95343 Y_RNA.32-201ENST00000362589 110 ntBASIC0.17□□□□□ -2.38
SIX3O95343 RNY4P28-201ENST00000365281 93 ntBASIC0.17□□□□□ -2.38
SIX3O95343 Y_RNA.536-201ENST00000384621 113 ntBASIC0.17□□□□□ -2.38
SIX3O95343 Y_RNA.588-201ENST00000391254 102 ntBASIC0.17□□□□□ -2.38
SIX3O95343 RNU2-59P-201ENST00000410482 191 ntBASIC0.17□□□□□ -2.38
SIX3O95343 SUMO1P3-201ENST00000439961 304 ntBASIC0.17□□□□□ -2.38
SIX3O95343 AC108740.1-201ENST00000498629 225 ntBASIC0.17□□□□□ -2.38
SIX3O95343 MTND5P32-201ENST00000560711 1802 ntBASIC0.17□□□□□ -2.38
SIX3O95343 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.17□□□□□ -2.38
SIX3O95343 RNY1P13-201ENST00000365030 105 ntBASIC0.16□□□□□ -2.38
SIX3O95343 Y_RNA.568-201ENST00000384742 113 ntBASIC0.16□□□□□ -2.38
SIX3O95343 HMGN2P22-201ENST00000427588 175 ntBASIC0.16□□□□□ -2.38
SIX3O95343 SNORA25.16-201ENST00000516741 121 ntBASIC0.16□□□□□ -2.38
SIX3O95343 SCARNA15-202ENST00000516881 127 ntBASIC0.16□□□□□ -2.38
SIX3O95343 AC112693.2-201ENST00000556538 232 ntBASIC0.16□□□□□ -2.38
SIX3O95343 MIR4645-201ENST00000583158 77 ntBASIC0.16□□□□□ -2.38
SIX3O95343 AC011921.3-201ENST00000605540 361 ntBASIC0.16□□□□□ -2.38
SIX3O95343 MIR101-2-201ENST00000362195 79 ntBASIC0.15□□□□□ -2.39
SIX3O95343 SNORD114-3-201ENST00000364969 75 ntBASIC0.15□□□□□ -2.39
SIX3O95343 Y_RNA.495-201ENST00000384435 112 ntBASIC0.15□□□□□ -2.39
SIX3O95343 Y_RNA.539-201ENST00000384635 107 ntBASIC0.15□□□□□ -2.39
SIX3O95343 MIR224-201ENST00000384889 81 ntBASIC0.15□□□□□ -2.39
SIX3O95343 Y_RNA.626-201ENST00000411288 95 ntBASIC0.15□□□□□ -2.39
SIX3O95343 RNU7-79P-201ENST00000516082 62 ntBASIC0.15□□□□□ -2.39
SIX3O95343 RNA5SP33-201ENST00000516687 98 ntBASIC0.15□□□□□ -2.39
SIX3O95343 MTND5P34-201ENST00000568888 325 ntBASIC0.15□□□□□ -2.39
SIX3O95343 RNU4-58P-201ENST00000363192 141 ntBASIC0.14□□□□□ -2.39
SIX3O95343 SNORA36.1-201ENST00000363424 132 ntBASIC0.14□□□□□ -2.39
SIX3O95343 Y_RNA.171-201ENST00000363760 102 ntBASIC0.14□□□□□ -2.39
SIX3O95343 RNU6-275P-201ENST00000364910 107 ntBASIC0.14□□□□□ -2.39
SIX3O95343 Y_RNA.413-201ENST00000384007 102 ntBASIC0.14□□□□□ -2.39
SIX3O95343 RNU6-815P-201ENST00000384080 113 ntBASIC0.14□□□□□ -2.39
SIX3O95343 RNU6-738P-201ENST00000384531 106 ntBASIC0.14□□□□□ -2.39
SIX3O95343 RNA5SP451-201ENST00000410588 110 ntBASIC0.14□□□□□ -2.39
SIX3O95343 Y_RNA.754-201ENST00000476024 102 ntBASIC0.14□□□□□ -2.39
SIX3O95343 AC074198.2-201ENST00000508153 258 ntBASIC0.14□□□□□ -2.39
SIX3O95343 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.14□□□□□ -2.39
SIX3O95343 RNU7-129P-201ENST00000516128 62 ntBASIC0.14□□□□□ -2.39
SIX3O95343 Y_RNA.790-201ENST00000614282 102 ntBASIC0.14□□□□□ -2.39
SIX3O95343 Y_RNA.782-201ENST00000614695 102 ntBASIC0.14□□□□□ -2.39
SIX3O95343 RNU6-690P-201ENST00000365242 106 ntBASIC0.13□□□□□ -2.39
SIX3O95343 SNORA32-201ENST00000384072 121 ntBASIC0.13□□□□□ -2.39
SIX3O95343 RNU6-291P-201ENST00000384720 107 ntBASIC0.13□□□□□ -2.39
SIX3O95343 MIR4315-1-201ENST00000636800 73 ntBASIC0.13□□□□□ -2.39
SIX3O95343 MIR4315-2-201ENST00000640925 73 ntBASIC0.13□□□□□ -2.39
SIX3O95343 AC091304.10-201ENST00000641554 121 ntBASIC0.13□□□□□ -2.39
SIX3O95343 Y_RNA.423-201ENST00000384057 113 ntBASIC0.12□□□□□ -2.39
SIX3O95343 Y_RNA.478-201ENST00000384358 107 ntBASIC0.12□□□□□ -2.39
SIX3O95343 Y_RNA.514-201ENST00000384528 112 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 1879.2 ms