Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 Y_RNA.297-201ENST00000364950 91 ntBASIC0.46□□□□□ -2.34
NPHP1O15259 RNU6-1086P-201ENST00000410930 100 ntBASIC0.46□□□□□ -2.34
NPHP1O15259 RNU6-1271P-201ENST00000517049 105 ntBASIC0.46□□□□□ -2.34
NPHP1O15259 MIR3678-201ENST00000578455 94 ntBASIC0.46□□□□□ -2.34
NPHP1O15259 AC072026.1-201ENST00000605023 201 ntBASIC0.46□□□□□ -2.34
NPHP1O15259 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.45□□□□□ -2.34
NPHP1O15259 Y_RNA.13-201ENST00000362403 112 ntBASIC0.45□□□□□ -2.34
NPHP1O15259 RNU6-818P-201ENST00000364837 108 ntBASIC0.45□□□□□ -2.34
NPHP1O15259 RNY1P13-201ENST00000365030 105 ntBASIC0.45□□□□□ -2.34
NPHP1O15259 Y_RNA.401-201ENST00000383965 117 ntBASIC0.45□□□□□ -2.34
NPHP1O15259 MT-TG-201ENST00000387429 68 ntBASIC0.45□□□□□ -2.34
NPHP1O15259 SNORA75.5-201ENST00000391291 81 ntBASIC0.45□□□□□ -2.34
NPHP1O15259 MIR4491-201ENST00000581087 68 ntBASIC0.45□□□□□ -2.34
NPHP1O15259 RNU6-403P-201ENST00000363163 104 ntBASIC0.44□□□□□ -2.34
NPHP1O15259 MIR518A1-201ENST00000385068 85 ntBASIC0.44□□□□□ -2.34
NPHP1O15259 SNORA40.8-201ENST00000411034 126 ntBASIC0.44□□□□□ -2.34
NPHP1O15259 SNORA25.12-201ENST00000516202 82 ntBASIC0.44□□□□□ -2.34
NPHP1O15259 AP003327.1-201ENST00000529684 127 ntBASIC0.44□□□□□ -2.34
NPHP1O15259 MIR3646-201ENST00000578301 84 ntBASIC0.44□□□□□ -2.34
NPHP1O15259 MIR6082-201ENST00000613604 109 ntBASIC0.44□□□□□ -2.34
NPHP1O15259 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.44□□□□□ -2.34
NPHP1O15259 AC078938.1-201ENST00000620993 318 ntBASIC0.44□□□□□ -2.34
NPHP1O15259 MIR6844-201ENST00000637122 62 ntBASIC0.44□□□□□ -2.34
NPHP1O15259 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
NPHP1O15259 Y_RNA.357-201ENST00000365487 109 ntBASIC0.43□□□□□ -2.34
NPHP1O15259 Y_RNA.470-201ENST00000384307 117 ntBASIC0.43□□□□□ -2.34
NPHP1O15259 Y_RNA.497-201ENST00000384447 98 ntBASIC0.43□□□□□ -2.34
NPHP1O15259 RNU6-239P-201ENST00000390990 99 ntBASIC0.43□□□□□ -2.34
NPHP1O15259 Y_RNA.617-201ENST00000410920 90 ntBASIC0.43□□□□□ -2.34
NPHP1O15259 RNU7-121P-201ENST00000516604 62 ntBASIC0.43□□□□□ -2.34
NPHP1O15259 uc_338.16-201ENST00000621804 95 ntBASIC0.43□□□□□ -2.34
NPHP1O15259 SNORD115-2-201ENST00000362842 82 ntBASIC0.42□□□□□ -2.34
NPHP1O15259 RNU4-84P-201ENST00000364200 139 ntBASIC0.42□□□□□ -2.34
NPHP1O15259 SNORD115-20-201ENST00000365099 82 ntBASIC0.42□□□□□ -2.34
NPHP1O15259 RNU6-588P-201ENST00000410281 105 ntBASIC0.42□□□□□ -2.34
NPHP1O15259 Y_RNA.793-201ENST00000411222 111 ntBASIC0.42□□□□□ -2.34
NPHP1O15259 AL022718.1-201ENST00000412004 84 ntBASIC0.42□□□□□ -2.34
NPHP1O15259 RNU7-113P-201ENST00000459273 62 ntBASIC0.42□□□□□ -2.34
NPHP1O15259 RNU7-79P-201ENST00000516082 62 ntBASIC0.42□□□□□ -2.34
NPHP1O15259 RNU6-765P-201ENST00000516916 99 ntBASIC0.42□□□□□ -2.34
NPHP1O15259 RNU7-35P-201ENST00000517174 62 ntBASIC0.42□□□□□ -2.34
NPHP1O15259 AP002392.1-201ENST00000537692 208 ntBASIC0.42□□□□□ -2.34
NPHP1O15259 AC011603.4-201ENST00000611325 277 ntBASIC0.42□□□□□ -2.34
NPHP1O15259 AC090625.1-201ENST00000357130 210 ntBASIC0.41□□□□□ -2.34
NPHP1O15259 Y_RNA.120-201ENST00000363304 110 ntBASIC0.41□□□□□ -2.34
NPHP1O15259 Y_RNA.240-201ENST00000364469 95 ntBASIC0.41□□□□□ -2.34
NPHP1O15259 RNU6-690P-201ENST00000365242 106 ntBASIC0.41□□□□□ -2.34
NPHP1O15259 Y_RNA.552-201ENST00000384665 112 ntBASIC0.41□□□□□ -2.34
NPHP1O15259 RNA5SP63-201ENST00000391225 112 ntBASIC0.41□□□□□ -2.34
NPHP1O15259 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.41□□□□□ -2.34
NPHP1O15259 SNORD71-201ENST00000411292 86 ntBASIC0.41□□□□□ -2.34
NPHP1O15259 RNU6-388P-201ENST00000517012 105 ntBASIC0.41□□□□□ -2.34
NPHP1O15259 RNU6-389P-201ENST00000517048 105 ntBASIC0.41□□□□□ -2.34
NPHP1O15259 RNU2-60P-201ENST00000517290 128 ntBASIC0.41□□□□□ -2.34
NPHP1O15259 AC133485.4-201ENST00000561835 220 ntBASIC0.41□□□□□ -2.34
NPHP1O15259 MIR2909-201ENST00000617113 69 ntBASIC0.41□□□□□ -2.34
NPHP1O15259 RNU6-200P-201ENST00000364743 107 ntBASIC0.4□□□□□ -2.35
NPHP1O15259 Y_RNA.280-201ENST00000364765 112 ntBASIC0.4□□□□□ -2.35
NPHP1O15259 SNORA8.2-201ENST00000384372 139 ntBASIC0.4□□□□□ -2.35
NPHP1O15259 AL512326.2-201ENST00000426359 151 ntBASIC0.4□□□□□ -2.35
NPHP1O15259 MTATP6P21-201ENST00000440681 189 ntBASIC0.4□□□□□ -2.35
NPHP1O15259 RNA5SP33-201ENST00000516687 98 ntBASIC0.4□□□□□ -2.35
NPHP1O15259 AC023932.2-201ENST00000603176 175 ntBASIC0.4□□□□□ -2.35
NPHP1O15259 RNU4-67P-201ENST00000364569 141 ntBASIC0.39□□□□□ -2.35
NPHP1O15259 RNU6-1318P-201ENST00000365389 103 ntBASIC0.39□□□□□ -2.35
NPHP1O15259 Y_RNA.567-201ENST00000384736 106 ntBASIC0.39□□□□□ -2.35
NPHP1O15259 RNU6-138P-201ENST00000515952 107 ntBASIC0.39□□□□□ -2.35
NPHP1O15259 RNA5SP134-201ENST00000516492 96 ntBASIC0.39□□□□□ -2.35
NPHP1O15259 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.39□□□□□ -2.35
NPHP1O15259 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.39□□□□□ -2.35
NPHP1O15259 MIR4305-201ENST00000583252 102 ntBASIC0.39□□□□□ -2.35
NPHP1O15259 SNORA25.18-201ENST00000607153 114 ntBASIC0.39□□□□□ -2.35
NPHP1O15259 MIR3658-201ENST00000636291 56 ntBASIC0.39□□□□□ -2.35
NPHP1O15259 MIR103A1-201ENST00000362165 78 ntBASIC0.38□□□□□ -2.35
NPHP1O15259 SNORD44.1-201ENST00000363202 61 ntBASIC0.38□□□□□ -2.35
NPHP1O15259 SNORD118-201ENST00000363593 134 ntBASIC0.38□□□□□ -2.35
NPHP1O15259 Y_RNA.476-201ENST00000384347 108 ntBASIC0.38□□□□□ -2.35
NPHP1O15259 SNORA72.6-201ENST00000384520 129 ntBASIC0.38□□□□□ -2.35
NPHP1O15259 Y_RNA.531-201ENST00000384589 121 ntBASIC0.38□□□□□ -2.35
NPHP1O15259 MIR644A-201ENST00000385262 94 ntBASIC0.38□□□□□ -2.35
NPHP1O15259 RNU7-120P-201ENST00000459334 63 ntBASIC0.38□□□□□ -2.35
NPHP1O15259 RNU2-35P-201ENST00000516446 142 ntBASIC0.38□□□□□ -2.35
NPHP1O15259 SNORA25.16-201ENST00000516741 121 ntBASIC0.38□□□□□ -2.35
NPHP1O15259 AC022523.2-201ENST00000561045 150 ntBASIC0.38□□□□□ -2.35
NPHP1O15259 DNAJC19P2-201ENST00000593340 302 ntBASIC0.38□□□□□ -2.35
NPHP1O15259 Y_RNA.32-201ENST00000362589 110 ntBASIC0.37□□□□□ -2.35
NPHP1O15259 RNY1P11-201ENST00000363759 113 ntBASIC0.37□□□□□ -2.35
NPHP1O15259 RNU6-1327P-201ENST00000365302 105 ntBASIC0.37□□□□□ -2.35
NPHP1O15259 Y_RNA.441-201ENST00000384123 112 ntBASIC0.37□□□□□ -2.35
NPHP1O15259 RNU6-240P-201ENST00000516098 97 ntBASIC0.37□□□□□ -2.35
NPHP1O15259 RNU6-861P-201ENST00000516745 106 ntBASIC0.37□□□□□ -2.35
NPHP1O15259 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.37□□□□□ -2.35
NPHP1O15259 RNU6-682P-201ENST00000363843 106 ntBASIC0.36□□□□□ -2.35
NPHP1O15259 SNORA32-201ENST00000384072 121 ntBASIC0.36□□□□□ -2.35
NPHP1O15259 Y_RNA.536-201ENST00000384621 113 ntBASIC0.36□□□□□ -2.35
NPHP1O15259 SNRPGP12-201ENST00000449481 213 ntBASIC0.36□□□□□ -2.35
NPHP1O15259 AC108740.1-201ENST00000498629 225 ntBASIC0.36□□□□□ -2.35
NPHP1O15259 SNORA31.14-201ENST00000516728 116 ntBASIC0.36□□□□□ -2.35
NPHP1O15259 AC138907.4-201ENST00000570107 226 ntBASIC0.36□□□□□ -2.35
NPHP1O15259 MIR548AE2-201ENST00000583456 67 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 278.7 ms