Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AC020891.4-201ENST00000605745 93 ntBASIC2.49□□□□□ -2.01
CHMP3Q9Y3E7 SNORD38B-202ENST00000625943 69 ntBASIC2.49□□□□□ -2.01
CHMP3Q9Y3E7 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CHMP3Q9Y3E7 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
CHMP3Q9Y3E7 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
CHMP3Q9Y3E7 SNORD114-10-201ENST00000363409 72 ntBASIC2.48□□□□□ -2.01
CHMP3Q9Y3E7 SNORD116-10-201ENST00000363791 102 ntBASIC2.48□□□□□ -2.01
CHMP3Q9Y3E7 Y_RNA.620-201ENST00000411009 88 ntBASIC2.48□□□□□ -2.01
CHMP3Q9Y3E7 Y_RNA.685-201ENST00000516532 108 ntBASIC2.48□□□□□ -2.01
CHMP3Q9Y3E7 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CHMP3Q9Y3E7 AL359851.1-201ENST00000569460 4997 ntBASIC2.47□□□□□ -2.01
CHMP3Q9Y3E7 RNU6-1244P-201ENST00000363614 108 ntBASIC2.47□□□□□ -2.01
CHMP3Q9Y3E7 RNU6-1276P-201ENST00000365372 104 ntBASIC2.47□□□□□ -2.01
CHMP3Q9Y3E7 MIR548G-201ENST00000408442 89 ntBASIC2.47□□□□□ -2.01
CHMP3Q9Y3E7 RNU6ATAC41P-201ENST00000408600 126 ntBASIC2.47□□□□□ -2.01
CHMP3Q9Y3E7 AC244023.1-201ENST00000426884 112 ntBASIC2.47□□□□□ -2.01
CHMP3Q9Y3E7 JTBP1-201ENST00000441314 247 ntBASIC2.47□□□□□ -2.01
CHMP3Q9Y3E7 RNU7-48P-201ENST00000458875 63 ntBASIC2.47□□□□□ -2.01
CHMP3Q9Y3E7 AC141846.1-201ENST00000568348 142 ntBASIC2.47□□□□□ -2.01
CHMP3Q9Y3E7 AC242498.1-201ENST00000604134 111 ntBASIC2.47□□□□□ -2.01
CHMP3Q9Y3E7 AL096861.1-201ENST00000610899 123 ntBASIC2.47□□□□□ -2.01
CHMP3Q9Y3E7 AP000553.5-201ENST00000641933 54 ntBASIC2.47□□□□□ -2.01
CHMP3Q9Y3E7 RNA5SP432-201ENST00000362480 116 ntBASIC2.46□□□□□ -2.02
CHMP3Q9Y3E7 Y_RNA.191-201ENST00000363972 113 ntBASIC2.46□□□□□ -2.02
CHMP3Q9Y3E7 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
CHMP3Q9Y3E7 MIR1255A-201ENST00000408338 113 ntBASIC2.46□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-717P-201ENST00000459076 104 ntBASIC2.46□□□□□ -2.02
CHMP3Q9Y3E7 RPL23AP42-201ENST00000471152 471 ntBASIC2.46□□□□□ -2.02
CHMP3Q9Y3E7 MIR5588-201ENST00000581890 63 ntBASIC2.46□□□□□ -2.02
CHMP3Q9Y3E7 PRELID3BP2-201ENST00000605362 201 ntBASIC2.46□□□□□ -2.02
CHMP3Q9Y3E7 SNORA25.3-201ENST00000363205 127 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-979P-201ENST00000383896 107 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-787P-201ENST00000384032 107 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 Y_RNA.567-201ENST00000384736 106 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 MIR583-201ENST00000384846 75 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 SNORA40.18-201ENST00000391200 128 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 MIR1302-7-201ENST00000408841 72 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 RNA5SP237-201ENST00000410414 113 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 RNA5SP338-201ENST00000410495 85 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 AC027119.1-201ENST00000440877 241 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 SPINT5P-201ENST00000448174 155 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 RNU1-98P-201ENST00000458992 160 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 AC108210.2-201ENST00000503681 201 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-295P-201ENST00000516901 104 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 MIR5089-201ENST00000580047 84 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 AP000942.3-201ENST00000603702 160 ntBASIC2.45□□□□□ -2.02
CHMP3Q9Y3E7 RNA5SP138-201ENST00000365098 114 ntBASIC2.44□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-242P-201ENST00000384359 107 ntBASIC2.44□□□□□ -2.02
CHMP3Q9Y3E7 snoU13.23-201ENST00000458863 104 ntBASIC2.44□□□□□ -2.02
CHMP3Q9Y3E7 RNA5SP233-201ENST00000459153 113 ntBASIC2.44□□□□□ -2.02
CHMP3Q9Y3E7 MIR4287-201ENST00000579398 78 ntBASIC2.44□□□□□ -2.02
CHMP3Q9Y3E7 AL662814.1-201ENST00000617364 121 ntBASIC2.44□□□□□ -2.02
CHMP3Q9Y3E7 U8.13-201ENST00000390842 128 ntBASIC2.43□□□□□ -2.02
CHMP3Q9Y3E7 AC003989.2-201ENST00000440224 169 ntBASIC2.43□□□□□ -2.02
CHMP3Q9Y3E7 snoU13.25-201ENST00000458945 104 ntBASIC2.43□□□□□ -2.02
CHMP3Q9Y3E7 AC090255.1-201ENST00000495779 349 ntBASIC2.43□□□□□ -2.02
CHMP3Q9Y3E7 AC015712.3-201ENST00000559380 164 ntBASIC2.43□□□□□ -2.02
CHMP3Q9Y3E7 MIR4769-201ENST00000584126 77 ntBASIC2.43□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-90P-201ENST00000606352 106 ntBASIC2.43□□□□□ -2.02
CHMP3Q9Y3E7 MIR6845-201ENST00000613182 61 ntBASIC2.43□□□□□ -2.02
CHMP3Q9Y3E7 AC012676.2-201ENST00000619258 186 ntBASIC2.43□□□□□ -2.02
CHMP3Q9Y3E7 RNA5SP48-201ENST00000363969 126 ntBASIC2.42□□□□□ -2.02
CHMP3Q9Y3E7 Y_RNA.609-201ENST00000410669 89 ntBASIC2.42□□□□□ -2.02
CHMP3Q9Y3E7 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC2.42□□□□□ -2.02
CHMP3Q9Y3E7 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.42□□□□□ -2.02
CHMP3Q9Y3E7 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC2.42□□□□□ -2.02
CHMP3Q9Y3E7 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CHMP3Q9Y3E7 Y_RNA.98-201ENST00000363109 102 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 Y_RNA.173-201ENST00000363776 113 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-447P-201ENST00000410293 104 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-1118P-201ENST00000410382 104 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-1076P-201ENST00000410397 104 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-355P-201ENST00000410427 104 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-791P-201ENST00000410467 104 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-705P-201ENST00000410601 104 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-1100P-201ENST00000410691 104 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-860P-201ENST00000410860 104 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-1217P-201ENST00000411276 104 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-785P-201ENST00000411324 104 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 RNU1-40P-201ENST00000516816 164 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 RNU1-97P-201ENST00000516872 164 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 RNU6-548P-201ENST00000517083 115 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 SNORA77B-201ENST00000578179 125 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 AL627230.6-201ENST00000611129 280 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 U6.90-201ENST00000614007 104 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 U6.70-201ENST00000620287 104 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 AP001362.1-201ENST00000625165 124 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 MIR3202-2-201ENST00000635980 79 ntBASIC2.41□□□□□ -2.02
CHMP3Q9Y3E7 Y_RNA.4-201ENST00000362333 112 ntBASIC2.4□□□□□ -2.03
CHMP3Q9Y3E7 RNA5SP99-201ENST00000364020 114 ntBASIC2.4□□□□□ -2.03
CHMP3Q9Y3E7 MIR514B-201ENST00000516774 80 ntBASIC2.4□□□□□ -2.03
CHMP3Q9Y3E7 MTND5P40-201ENST00000559945 246 ntBASIC2.4□□□□□ -2.03
CHMP3Q9Y3E7 AC015688.6-201ENST00000577737 104 ntBASIC2.4□□□□□ -2.03
CHMP3Q9Y3E7 AL096840.1-201ENST00000603287 93 ntBASIC2.4□□□□□ -2.03
CHMP3Q9Y3E7 RNU4-52P-201ENST00000384209 138 ntBASIC2.39□□□□□ -2.03
CHMP3Q9Y3E7 MIR181B2-201ENST00000385004 89 ntBASIC2.39□□□□□ -2.03
CHMP3Q9Y3E7 RNA5SP212-201ENST00000391223 107 ntBASIC2.39□□□□□ -2.03
CHMP3Q9Y3E7 RNU6ATAC42P-201ENST00000408637 95 ntBASIC2.39□□□□□ -2.03
CHMP3Q9Y3E7 RNU6-613P-201ENST00000410412 108 ntBASIC2.39□□□□□ -2.03
CHMP3Q9Y3E7 Y_RNA.611-201ENST00000410682 108 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 250.1 ms