Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SNORD116-15-201ENST00000384445 92 ntBASIC1.22□□□□□ -2.21
VPS4AQ9UN37 SNORD116-19-201ENST00000384729 92 ntBASIC1.22□□□□□ -2.21
VPS4AQ9UN37 MIR19B1-201ENST00000384829 87 ntBASIC1.22□□□□□ -2.21
VPS4AQ9UN37 SNORD12C-201ENST00000386307 89 ntBASIC1.22□□□□□ -2.21
VPS4AQ9UN37 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
VPS4AQ9UN37 RNA5SP136-201ENST00000410906 107 ntBASIC1.22□□□□□ -2.21
VPS4AQ9UN37 RN7SKP179-201ENST00000516126 217 ntBASIC1.22□□□□□ -2.21
VPS4AQ9UN37 RNU6-781P-201ENST00000516377 101 ntBASIC1.22□□□□□ -2.21
VPS4AQ9UN37 RNY4P20-201ENST00000516678 93 ntBASIC1.22□□□□□ -2.21
VPS4AQ9UN37 AC019288.1-201ENST00000557918 224 ntBASIC1.22□□□□□ -2.21
VPS4AQ9UN37 AP000753.3-201ENST00000604083 169 ntBASIC1.22□□□□□ -2.21
VPS4AQ9UN37 MIR6788-201ENST00000618842 66 ntBASIC1.22□□□□□ -2.21
VPS4AQ9UN37 Y_RNA.127-201ENST00000363386 109 ntBASIC1.21□□□□□ -2.22
VPS4AQ9UN37 SNORD114-27-201ENST00000363766 70 ntBASIC1.21□□□□□ -2.22
VPS4AQ9UN37 SNORA25.8-201ENST00000364831 128 ntBASIC1.21□□□□□ -2.22
VPS4AQ9UN37 Y_RNA.470-201ENST00000384307 117 ntBASIC1.21□□□□□ -2.22
VPS4AQ9UN37 Y_RNA.563-201ENST00000384707 108 ntBASIC1.21□□□□□ -2.22
VPS4AQ9UN37 MIR618-201ENST00000385287 98 ntBASIC1.21□□□□□ -2.22
VPS4AQ9UN37 AC002429.1-201ENST00000437672 148 ntBASIC1.21□□□□□ -2.22
VPS4AQ9UN37 RNU7-90P-201ENST00000459216 62 ntBASIC1.21□□□□□ -2.22
VPS4AQ9UN37 RNU6-1234P-201ENST00000516877 103 ntBASIC1.21□□□□□ -2.22
VPS4AQ9UN37 AC106800.4-201ENST00000614905 153 ntBASIC1.21□□□□□ -2.22
VPS4AQ9UN37 MIR6740-201ENST00000618268 113 ntBASIC1.21□□□□□ -2.22
VPS4AQ9UN37 RNU7-107P-201ENST00000459121 61 ntBASIC1.2□□□□□ -2.22
VPS4AQ9UN37 AC004223.1-201ENST00000479840 271 ntBASIC1.2□□□□□ -2.22
VPS4AQ9UN37 RPS23P4-201ENST00000487908 423 ntBASIC1.2□□□□□ -2.22
VPS4AQ9UN37 RNU6-772P-201ENST00000516042 105 ntBASIC1.2□□□□□ -2.22
VPS4AQ9UN37 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.2□□□□□ -2.22
VPS4AQ9UN37 MIR3914-2-201ENST00000637339 95 ntBASIC1.2□□□□□ -2.22
VPS4AQ9UN37 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.19□□□□□ -2.22
VPS4AQ9UN37 AL157777.2-201ENST00000258070 137 ntBASIC1.19□□□□□ -2.22
VPS4AQ9UN37 RNU1-124P-201ENST00000363861 145 ntBASIC1.19□□□□□ -2.22
VPS4AQ9UN37 Y_RNA.198-201ENST00000364013 98 ntBASIC1.19□□□□□ -2.22
VPS4AQ9UN37 SNORD113.3-201ENST00000364630 78 ntBASIC1.19□□□□□ -2.22
VPS4AQ9UN37 RNU6-1117P-201ENST00000384525 104 ntBASIC1.19□□□□□ -2.22
VPS4AQ9UN37 RNU6-939P-201ENST00000384634 107 ntBASIC1.19□□□□□ -2.22
VPS4AQ9UN37 RNU6-1104P-201ENST00000384723 104 ntBASIC1.19□□□□□ -2.22
VPS4AQ9UN37 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
VPS4AQ9UN37 SNORD111-201ENST00000408139 94 ntBASIC1.19□□□□□ -2.22
VPS4AQ9UN37 Y_RNA.630-201ENST00000411370 108 ntBASIC1.19□□□□□ -2.22
VPS4AQ9UN37 RNU7-113P-201ENST00000459273 62 ntBASIC1.19□□□□□ -2.22
VPS4AQ9UN37 COX6CP6-201ENST00000490840 228 ntBASIC1.19□□□□□ -2.22
VPS4AQ9UN37 RNU6-22P-201ENST00000384355 107 ntBASIC1.18□□□□□ -2.22
VPS4AQ9UN37 MIR588-201ENST00000384900 83 ntBASIC1.18□□□□□ -2.22
VPS4AQ9UN37 MT-TI-201ENST00000387365 69 ntBASIC1.18□□□□□ -2.22
VPS4AQ9UN37 SNORA40.6-201ENST00000391153 128 ntBASIC1.18□□□□□ -2.22
VPS4AQ9UN37 RNA5SP95-201ENST00000410319 137 ntBASIC1.18□□□□□ -2.22
VPS4AQ9UN37 RNU6-1086P-201ENST00000410930 100 ntBASIC1.18□□□□□ -2.22
VPS4AQ9UN37 RNU7-35P-201ENST00000517174 62 ntBASIC1.18□□□□□ -2.22
VPS4AQ9UN37 uc_338.6-201ENST00000613544 171 ntBASIC1.18□□□□□ -2.22
VPS4AQ9UN37 MIR30D-201ENST00000362283 70 ntBASIC1.17□□□□□ -2.22
VPS4AQ9UN37 Y_RNA.205-201ENST00000364128 113 ntBASIC1.17□□□□□ -2.22
VPS4AQ9UN37 Y_RNA.299-201ENST00000364973 94 ntBASIC1.17□□□□□ -2.22
VPS4AQ9UN37 Y_RNA.525-201ENST00000384570 113 ntBASIC1.17□□□□□ -2.22
VPS4AQ9UN37 RNU6-205P-201ENST00000390858 107 ntBASIC1.17□□□□□ -2.22
VPS4AQ9UN37 MIR548J-201ENST00000408833 112 ntBASIC1.17□□□□□ -2.22
VPS4AQ9UN37 AC008267.6-201ENST00000441664 139 ntBASIC1.17□□□□□ -2.22
VPS4AQ9UN37 MIR1270-201ENST00000459320 83 ntBASIC1.17□□□□□ -2.22
VPS4AQ9UN37 AC025166.1-201ENST00000612411 163 ntBASIC1.17□□□□□ -2.22
VPS4AQ9UN37 AL662814.1-201ENST00000617364 121 ntBASIC1.17□□□□□ -2.22
VPS4AQ9UN37 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.17□□□□□ -2.22
VPS4AQ9UN37 AC008163.1-202ENST00000636004 2889 ntBASIC1.17□□□□□ -2.22
VPS4AQ9UN37 Y_RNA.330-201ENST00000365230 109 ntBASIC1.16□□□□□ -2.22
VPS4AQ9UN37 RNU6-1168P-201ENST00000390831 104 ntBASIC1.16□□□□□ -2.22
VPS4AQ9UN37 MRPL35P3-201ENST00000421557 364 ntBASIC1.16□□□□□ -2.22
VPS4AQ9UN37 AC063976.4-201ENST00000421971 163 ntBASIC1.16□□□□□ -2.22
VPS4AQ9UN37 RNU7-62P-201ENST00000458856 62 ntBASIC1.16□□□□□ -2.22
VPS4AQ9UN37 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.16□□□□□ -2.22
VPS4AQ9UN37 RNU6-479P-201ENST00000516348 105 ntBASIC1.16□□□□□ -2.22
VPS4AQ9UN37 RNA5SP33-201ENST00000516687 98 ntBASIC1.16□□□□□ -2.22
VPS4AQ9UN37 RNA5SP404-201ENST00000517118 132 ntBASIC1.16□□□□□ -2.22
VPS4AQ9UN37 AC022523.2-201ENST00000561045 150 ntBASIC1.16□□□□□ -2.22
VPS4AQ9UN37 MIR3660-201ENST00000584845 100 ntBASIC1.16□□□□□ -2.22
VPS4AQ9UN37 AC012676.2-201ENST00000619258 186 ntBASIC1.16□□□□□ -2.22
VPS4AQ9UN37 Y_RNA.346-201ENST00000365385 112 ntBASIC1.15□□□□□ -2.23
VPS4AQ9UN37 SNORA18-201ENST00000384416 132 ntBASIC1.15□□□□□ -2.23
VPS4AQ9UN37 Y_RNA.528-201ENST00000384575 108 ntBASIC1.15□□□□□ -2.23
VPS4AQ9UN37 MIR1263-201ENST00000408324 86 ntBASIC1.15□□□□□ -2.23
VPS4AQ9UN37 RNU6-1165P-201ENST00000410119 107 ntBASIC1.15□□□□□ -2.23
VPS4AQ9UN37 RNU4-69P-201ENST00000410677 143 ntBASIC1.15□□□□□ -2.23
VPS4AQ9UN37 MIR18B-201ENST00000454574 71 ntBASIC1.15□□□□□ -2.23
VPS4AQ9UN37 AC087343.1-201ENST00000477341 475 ntBASIC1.15□□□□□ -2.23
VPS4AQ9UN37 RNU6-1333P-201ENST00000516162 93 ntBASIC1.15□□□□□ -2.23
VPS4AQ9UN37 MIR548AE2-201ENST00000583456 67 ntBASIC1.15□□□□□ -2.23
VPS4AQ9UN37 AL365222.1-201ENST00000614661 98 ntBASIC1.15□□□□□ -2.23
VPS4AQ9UN37 MTND5P18-201ENST00000445624 1801 ntBASIC1.15□□□□□ -2.23
VPS4AQ9UN37 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
VPS4AQ9UN37 SNORA2B-201ENST00000384583 137 ntBASIC1.14□□□□□ -2.23
VPS4AQ9UN37 MIR222-201ENST00000384992 110 ntBASIC1.14□□□□□ -2.23
VPS4AQ9UN37 MT-TF-201ENST00000387314 71 ntBASIC1.14□□□□□ -2.23
VPS4AQ9UN37 RNU6-62P-201ENST00000516526 102 ntBASIC1.14□□□□□ -2.23
VPS4AQ9UN37 RNU6-1061P-201ENST00000516530 99 ntBASIC1.14□□□□□ -2.23
VPS4AQ9UN37 AC141846.1-201ENST00000568348 142 ntBASIC1.14□□□□□ -2.23
VPS4AQ9UN37 MIR4295-201ENST00000585286 85 ntBASIC1.14□□□□□ -2.23
VPS4AQ9UN37 Y_RNA.261-201ENST00000364631 102 ntBASIC1.13□□□□□ -2.23
VPS4AQ9UN37 RNA5SP205-201ENST00000364653 136 ntBASIC1.13□□□□□ -2.23
VPS4AQ9UN37 AC023827.1-201ENST00000569247 97 ntBASIC1.13□□□□□ -2.23
VPS4AQ9UN37 U6.95-201ENST00000636931 70 ntBASIC1.13□□□□□ -2.23
VPS4AQ9UN37 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.13□□□□□ -2.23
VPS4AQ9UN37 RNU6-369P-201ENST00000362515 102 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 185.8 ms