Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RNU7-102P-201ENST00000458948 62 ntBASIC0.82□□□□□ -2.28
SHROOM4Q9ULL8 MIR5589-201ENST00000579442 60 ntBASIC0.82□□□□□ -2.28
SHROOM4Q9ULL8 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
SHROOM4Q9ULL8 RNA5SP117-201ENST00000365294 118 ntBASIC0.81□□□□□ -2.28
SHROOM4Q9ULL8 SNORD93-201ENST00000408813 74 ntBASIC0.81□□□□□ -2.28
SHROOM4Q9ULL8 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.81□□□□□ -2.28
SHROOM4Q9ULL8 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.81□□□□□ -2.28
SHROOM4Q9ULL8 AC062037.2-201ENST00000610137 73 ntBASIC0.81□□□□□ -2.28
SHROOM4Q9ULL8 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.81□□□□□ -2.28
SHROOM4Q9ULL8 MIR30D-201ENST00000362283 70 ntBASIC0.8□□□□□ -2.28
SHROOM4Q9ULL8 Y_RNA.515-201ENST00000384535 112 ntBASIC0.8□□□□□ -2.28
SHROOM4Q9ULL8 SNORD58.1-201ENST00000391313 66 ntBASIC0.8□□□□□ -2.28
SHROOM4Q9ULL8 Y_RNA.626-201ENST00000411288 95 ntBASIC0.8□□□□□ -2.28
SHROOM4Q9ULL8 U4.1-201ENST00000620349 87 ntBASIC0.8□□□□□ -2.28
SHROOM4Q9ULL8 RNU6-945P-201ENST00000383947 107 ntBASIC0.8□□□□□ -2.28
SHROOM4Q9ULL8 MTND2P23-201ENST00000422990 651 ntBASIC0.8□□□□□ -2.28
SHROOM4Q9ULL8 MIR376A2-201ENST00000636782 80 ntBASIC0.8□□□□□ -2.28
SHROOM4Q9ULL8 MIR568-201ENST00000385036 95 ntBASIC0.79□□□□□ -2.28
SHROOM4Q9ULL8 RNU6-923P-201ENST00000364753 107 ntBASIC0.78□□□□□ -2.28
SHROOM4Q9ULL8 Y_RNA.477-201ENST00000384352 108 ntBASIC0.78□□□□□ -2.28
SHROOM4Q9ULL8 MIR624-201ENST00000385217 97 ntBASIC0.78□□□□□ -2.28
SHROOM4Q9ULL8 SNORD100-201ENST00000408573 76 ntBASIC0.78□□□□□ -2.28
SHROOM4Q9ULL8 RNU4-71P-201ENST00000516258 113 ntBASIC0.78□□□□□ -2.28
SHROOM4Q9ULL8 RN7SKP12-201ENST00000516275 143 ntBASIC0.78□□□□□ -2.28
SHROOM4Q9ULL8 Y_RNA.182-201ENST00000363880 111 ntBASIC0.77□□□□□ -2.29
SHROOM4Q9ULL8 SNORA25.7-201ENST00000364375 127 ntBASIC0.77□□□□□ -2.29
SHROOM4Q9ULL8 Y_RNA.571-201ENST00000384753 98 ntBASIC0.77□□□□□ -2.29
SHROOM4Q9ULL8 RNU6-679P-201ENST00000391003 106 ntBASIC0.77□□□□□ -2.29
SHROOM4Q9ULL8 snoU13.19-201ENST00000459148 104 ntBASIC0.77□□□□□ -2.29
SHROOM4Q9ULL8 AC002350.1-201ENST00000490759 375 ntBASIC0.77□□□□□ -2.29
SHROOM4Q9ULL8 RNU6-448P-201ENST00000517052 107 ntBASIC0.77□□□□□ -2.29
SHROOM4Q9ULL8 MIR6718-201ENST00000616153 80 ntBASIC0.77□□□□□ -2.29
SHROOM4Q9ULL8 MIR4802-201ENST00000581881 80 ntBASIC0.76□□□□□ -2.29
SHROOM4Q9ULL8 AC021613.1-201ENST00000623880 111 ntBASIC0.76□□□□□ -2.29
SHROOM4Q9ULL8 RNU6-978P-201ENST00000364371 103 ntBASIC0.75□□□□□ -2.29
SHROOM4Q9ULL8 RNY4P3-201ENST00000365254 95 ntBASIC0.75□□□□□ -2.29
SHROOM4Q9ULL8 RNU6-30P-201ENST00000384561 107 ntBASIC0.75□□□□□ -2.29
SHROOM4Q9ULL8 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.75□□□□□ -2.29
SHROOM4Q9ULL8 AL118496.2-201ENST00000448300 230 ntBASIC0.75□□□□□ -2.29
SHROOM4Q9ULL8 Y_RNA.170-201ENST00000363746 110 ntBASIC0.74□□□□□ -2.29
SHROOM4Q9ULL8 SNORA20.1-201ENST00000364790 130 ntBASIC0.74□□□□□ -2.29
SHROOM4Q9ULL8 Y_RNA.539-201ENST00000384635 107 ntBASIC0.74□□□□□ -2.29
SHROOM4Q9ULL8 AC008608.1-201ENST00000603910 127 ntBASIC0.74□□□□□ -2.29
SHROOM4Q9ULL8 RNU6-643P-201ENST00000384018 107 ntBASIC0.73□□□□□ -2.29
SHROOM4Q9ULL8 Y_RNA.668-201ENST00000516233 93 ntBASIC0.73□□□□□ -2.29
SHROOM4Q9ULL8 SCARNA15.1-201ENST00000516384 125 ntBASIC0.73□□□□□ -2.29
SHROOM4Q9ULL8 MIR3128-201ENST00000581957 66 ntBASIC0.73□□□□□ -2.29
SHROOM4Q9ULL8 AL662814.1-201ENST00000617364 121 ntBASIC0.73□□□□□ -2.29
SHROOM4Q9ULL8 RNU5E-9P-201ENST00000411164 104 ntBASIC0.73□□□□□ -2.29
SHROOM4Q9ULL8 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
SHROOM4Q9ULL8 MIR4719-201ENST00000585233 84 ntBASIC0.73□□□□□ -2.29
SHROOM4Q9ULL8 uc_338.17-201ENST00000619633 179 ntBASIC0.73□□□□□ -2.29
SHROOM4Q9ULL8 AC092634.7-201ENST00000621022 103 ntBASIC0.73□□□□□ -2.29
SHROOM4Q9ULL8 SNORA2A-201ENST00000383885 135 ntBASIC0.72□□□□□ -2.29
SHROOM4Q9ULL8 RNU4-83P-201ENST00000410863 133 ntBASIC0.71□□□□□ -2.3
SHROOM4Q9ULL8 Z95118.1-201ENST00000421372 247 ntBASIC0.71□□□□□ -2.3
SHROOM4Q9ULL8 SNORA22.1-201ENST00000362701 134 ntBASIC0.7□□□□□ -2.3
SHROOM4Q9ULL8 Y_RNA.521-201ENST00000384560 114 ntBASIC0.7□□□□□ -2.3
SHROOM4Q9ULL8 SNORA25.12-201ENST00000516202 82 ntBASIC0.7□□□□□ -2.3
SHROOM4Q9ULL8 SCARNA15-202ENST00000516881 127 ntBASIC0.7□□□□□ -2.3
SHROOM4Q9ULL8 MIR4308-201ENST00000580634 81 ntBASIC0.7□□□□□ -2.3
SHROOM4Q9ULL8 uc_338.16-201ENST00000621804 95 ntBASIC0.7□□□□□ -2.3
SHROOM4Q9ULL8 RNU6-275P-201ENST00000364910 107 ntBASIC0.69□□□□□ -2.3
SHROOM4Q9ULL8 Y_RNA.75-201ENST00000362927 97 ntBASIC0.68□□□□□ -2.3
SHROOM4Q9ULL8 RNY1P8-201ENST00000383970 114 ntBASIC0.68□□□□□ -2.3
SHROOM4Q9ULL8 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.68□□□□□ -2.3
SHROOM4Q9ULL8 RNU6-1023P-201ENST00000516137 106 ntBASIC0.68□□□□□ -2.3
SHROOM4Q9ULL8 RNU6-1149P-201ENST00000516810 97 ntBASIC0.68□□□□□ -2.3
SHROOM4Q9ULL8 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.67□□□□□ -2.3
SHROOM4Q9ULL8 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.67□□□□□ -2.3
SHROOM4Q9ULL8 RNU6-702P-201ENST00000364982 107 ntBASIC0.67□□□□□ -2.3
SHROOM4Q9ULL8 RNU6-196P-201ENST00000384315 107 ntBASIC0.67□□□□□ -2.3
SHROOM4Q9ULL8 MRPS18CP4-201ENST00000535821 231 ntBASIC0.67□□□□□ -2.3
SHROOM4Q9ULL8 AC141846.1-201ENST00000568348 142 ntBASIC0.67□□□□□ -2.3
SHROOM4Q9ULL8 MIR4431-201ENST00000579990 94 ntBASIC0.67□□□□□ -2.3
SHROOM4Q9ULL8 RNU6-403P-201ENST00000363163 104 ntBASIC0.66□□□□□ -2.3
SHROOM4Q9ULL8 RNU6-597P-201ENST00000365620 102 ntBASIC0.66□□□□□ -2.3
SHROOM4Q9ULL8 MIR3678-201ENST00000578455 94 ntBASIC0.66□□□□□ -2.3
SHROOM4Q9ULL8 AC090625.1-201ENST00000357130 210 ntBASIC0.65□□□□□ -2.31
SHROOM4Q9ULL8 Y_RNA.193-201ENST00000363979 102 ntBASIC0.65□□□□□ -2.31
SHROOM4Q9ULL8 U8.15-201ENST00000390947 134 ntBASIC0.65□□□□□ -2.31
SHROOM4Q9ULL8 U6.106-201ENST00000636360 105 ntBASIC0.65□□□□□ -2.31
SHROOM4Q9ULL8 MTND3P2-201ENST00000438452 342 ntBASIC0.64□□□□□ -2.31
SHROOM4Q9ULL8 MIR6841-201ENST00000637129 72 ntBASIC0.64□□□□□ -2.31
SHROOM4Q9ULL8 MTND5P32-201ENST00000560711 1802 ntBASIC0.63□□□□□ -2.31
SHROOM4Q9ULL8 RNU6-312P-201ENST00000364629 107 ntBASIC0.63□□□□□ -2.31
SHROOM4Q9ULL8 RNU6-949P-201ENST00000384040 107 ntBASIC0.63□□□□□ -2.31
SHROOM4Q9ULL8 RNU6-469P-201ENST00000516253 101 ntBASIC0.63□□□□□ -2.31
SHROOM4Q9ULL8 MIR4503-201ENST00000582187 83 ntBASIC0.63□□□□□ -2.31
SHROOM4Q9ULL8 Y_RNA.447-201ENST00000384184 113 ntBASIC0.62□□□□□ -2.31
SHROOM4Q9ULL8 RNY1P6-201ENST00000384193 109 ntBASIC0.62□□□□□ -2.31
SHROOM4Q9ULL8 MIR518A1-201ENST00000385068 85 ntBASIC0.62□□□□□ -2.31
SHROOM4Q9ULL8 RNU6-1086P-201ENST00000410930 100 ntBASIC0.62□□□□□ -2.31
SHROOM4Q9ULL8 RNU6-111P-201ENST00000517179 105 ntBASIC0.62□□□□□ -2.31
SHROOM4Q9ULL8 MIR4491-201ENST00000581087 68 ntBASIC0.62□□□□□ -2.31
SHROOM4Q9ULL8 Y_RNA.83-201ENST00000363005 113 ntBASIC0.61□□□□□ -2.31
SHROOM4Q9ULL8 SNORA18-201ENST00000384416 132 ntBASIC0.61□□□□□ -2.31
SHROOM4Q9ULL8 SNORA40.8-201ENST00000411034 126 ntBASIC0.61□□□□□ -2.31
SHROOM4Q9ULL8 SNORD71-201ENST00000411292 86 ntBASIC0.61□□□□□ -2.31
SHROOM4Q9ULL8 AL022718.1-201ENST00000412004 84 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 9.1 ms