| SAE1 | Q9UBE0 | RNU6-1307P-201 | ENST00000391012 | 103 nt | BASIC | 1.6 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | RNU6-109P-201 | ENST00000516364 | 107 nt | BASIC | 1.6 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | RNU6-184P-201 | ENST00000516514 | 107 nt | BASIC | 1.6 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | MIR4255-201 | ENST00000579351 | 72 nt | BASIC | 1.6 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | MIR6740-201 | ENST00000618268 | 113 nt | BASIC | 1.6 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | RNU6-1298P-201 | ENST00000362456 | 101 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | RNU6-1099P-201 | ENST00000363533 | 107 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | RNU6-654P-201 | ENST00000364373 | 107 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | RNY1P13-201 | ENST00000365030 | 105 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | SNORD115-35-201 | ENST00000365122 | 82 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | MIR206-201 | ENST00000384872 | 86 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | MIR588-201 | ENST00000384900 | 83 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | MIR577-201 | ENST00000385196 | 96 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | RNA5SP237-201 | ENST00000410414 | 113 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | RNU7-2P-201 | ENST00000516096 | 62 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | RNU6-904P-201 | ENST00000516206 | 101 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | MIR2115-201 | ENST00000516657 | 100 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | RNU6-537P-201 | ENST00000517277 | 103 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | AC141846.1-201 | ENST00000568348 | 142 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | PNRC2-204 | ENST00000579103 | 171 nt | TSL 2 BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | MIR4422-201 | ENST00000581938 | 83 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | AL662814.1-201 | ENST00000617364 | 121 nt | BASIC | 1.59 | □□□□□ -2.15 | | |
| SAE1 | Q9UBE0 | GNPDA2-204 | ENST00000509756 | 5382 nt | APPRIS ALT1 TSL 1 (best) BASIC | 1.59 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | Y_RNA.78-201 | ENST00000362970 | 110 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | MIR1304-201 | ENST00000408243 | 91 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNA5SP95-201 | ENST00000410319 | 137 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AC245517.4-201 | ENST00000448601 | 281 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AC048334.1-201 | ENST00000477975 | 159 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RN7SKP88-201 | ENST00000516847 | 250 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU11-2P-201 | ENST00000516898 | 142 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AC015712.3-201 | ENST00000559380 | 164 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | MIR4264-201 | ENST00000583520 | 66 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AP000753.3-201 | ENST00000604083 | 169 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | 7SK.8-201 | ENST00000612110 | 250 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | 7SK.11-201 | ENST00000615477 | 250 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AC105081.1-201 | ENST00000617727 | 106 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AL353997.5-201 | ENST00000618886 | 171 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | 7SK.13-201 | ENST00000622040 | 250 nt | BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AC068733.3-201 | ENST00000632757 | 269 nt | TSL 3 BASIC | 1.58 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNY3P2-201 | ENST00000362918 | 102 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNA5SP190-201 | ENST00000365222 | 118 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | MIR320A-201 | ENST00000385302 | 82 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | MT-TN-201 | ENST00000387400 | 73 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6-482P-201 | ENST00000391068 | 107 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | MIR934-201 | ENST00000401241 | 83 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | SNORD13-201 | ENST00000459299 | 104 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | Y_RNA.677-201 | ENST00000516401 | 85 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU7-137P-201 | ENST00000516788 | 62 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6-902P-201 | ENST00000517212 | 91 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AC024382.1-201 | ENST00000520224 | 292 nt | TSL 3 BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | DEFB131E-201 | ENST00000532329 | 154 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | MIR4694-201 | ENST00000578534 | 80 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | BX248123.2-201 | ENST00000606318 | 124 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | uc_338.6-201 | ENST00000613544 | 171 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AP001318.4-201 | ENST00000616637 | 121 nt | BASIC | 1.57 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6-832P-201 | ENST00000363319 | 107 nt | BASIC | 1.56 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | Y_RNA.348-201 | ENST00000365403 | 103 nt | BASIC | 1.56 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | MIR563-201 | ENST00000385080 | 79 nt | BASIC | 1.56 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6-613P-201 | ENST00000410412 | 108 nt | BASIC | 1.56 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6-1054P-201 | ENST00000411293 | 104 nt | BASIC | 1.56 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AL135923.1-201 | ENST00000413066 | 196 nt | TSL 3 BASIC | 1.56 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AC009093.3-203 | ENST00000565800 | 121 nt | TSL 2 BASIC | 1.56 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | MIR3124-201 | ENST00000582636 | 67 nt | BASIC | 1.56 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AL512310.12-203 | ENST00000640543 | 90 nt | BASIC | 1.56 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | SNORD114-10-201 | ENST00000363409 | 72 nt | BASIC | 1.55 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU4-36P-201 | ENST00000364294 | 144 nt | BASIC | 1.55 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | MIR764-201 | ENST00000390811 | 85 nt | BASIC | 1.55 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | 5S_rRNA.2-201 | ENST00000391293 | 112 nt | BASIC | 1.55 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6ATAC42P-201 | ENST00000408637 | 95 nt | BASIC | 1.55 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU7-62P-201 | ENST00000458856 | 62 nt | BASIC | 1.55 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AC023790.1-201 | ENST00000482174 | 347 nt | BASIC | 1.55 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AC007450.1-201 | ENST00000536492 | 188 nt | TSL 3 BASIC | 1.55 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | Y_RNA.448-201 | ENST00000384185 | 108 nt | BASIC | 1.54 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6-1201P-201 | ENST00000384227 | 107 nt | BASIC | 1.54 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6-905P-201 | ENST00000384434 | 107 nt | BASIC | 1.54 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | Y_RNA.544-201 | ENST00000384650 | 113 nt | BASIC | 1.54 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6ATAC3P-201 | ENST00000387974 | 126 nt | BASIC | 1.54 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6-1321P-201 | ENST00000390905 | 107 nt | BASIC | 1.54 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6-1165P-201 | ENST00000410119 | 107 nt | BASIC | 1.54 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | UBL5P1-201 | ENST00000507979 | 193 nt | BASIC | 1.54 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | SNORA31.2-201 | ENST00000516019 | 134 nt | BASIC | 1.54 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6-1018P-201 | ENST00000516577 | 106 nt | BASIC | 1.54 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | AL645939.4-201 | ENST00000604495 | 135 nt | BASIC | 1.54 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | FAM13A-AS1_1.1-201 | ENST00000612555 | 119 nt | BASIC | 1.54 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | MIR30D-201 | ENST00000362283 | 70 nt | BASIC | 1.53 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6-1313P-201 | ENST00000362622 | 102 nt | BASIC | 1.53 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6-640P-201 | ENST00000363693 | 105 nt | BASIC | 1.53 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | Y_RNA.363-201 | ENST00000365529 | 113 nt | BASIC | 1.53 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNU6-949P-201 | ENST00000384040 | 107 nt | BASIC | 1.53 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | RNA5SP170-201 | ENST00000517150 | 101 nt | BASIC | 1.53 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | SNORD53B-201 | ENST00000577887 | 78 nt | BASIC | 1.53 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | MIR4769-201 | ENST00000584126 | 77 nt | BASIC | 1.53 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | Y_RNA.818-201 | ENST00000618813 | 71 nt | BASIC | 1.53 | □□□□□ -2.16 | | |
| SAE1 | Q9UBE0 | ABCA5-201 | ENST00000392676 | 8220 nt | APPRIS P1 TSL 1 (best) BASIC | 1.53 | □□□□□ -2.17 | | |
| SAE1 | Q9UBE0 | MIR377-201 | ENST00000362145 | 69 nt | BASIC | 1.52 | □□□□□ -2.17 | | |
| SAE1 | Q9UBE0 | MIR34C-201 | ENST00000384831 | 77 nt | BASIC | 1.52 | □□□□□ -2.17 | | |
| SAE1 | Q9UBE0 | SNORA75.2-201 | ENST00000391138 | 150 nt | BASIC | 1.52 | □□□□□ -2.17 | | |
| SAE1 | Q9UBE0 | SNORA75.3-201 | ENST00000391231 | 150 nt | BASIC | 1.52 | □□□□□ -2.17 | | |
| SAE1 | Q9UBE0 | Y_RNA.601-201 | ENST00000410500 | 113 nt | BASIC | 1.52 | □□□□□ -2.17 | | |
| SAE1 | Q9UBE0 | AL354695.1-201 | ENST00000427935 | 228 nt | BASIC | 1.52 | □□□□□ -2.17 | | |