Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
TDP1Q9NUW8 Y_RNA.168-201ENST00000363740 102 ntBASIC1.37□□□□□ -2.19
TDP1Q9NUW8 Y_RNA.299-201ENST00000364973 94 ntBASIC1.37□□□□□ -2.19
TDP1Q9NUW8 RNU6-580P-201ENST00000365159 107 ntBASIC1.37□□□□□ -2.19
TDP1Q9NUW8 RNU6-53P-201ENST00000365367 106 ntBASIC1.37□□□□□ -2.19
TDP1Q9NUW8 Y_RNA.353-201ENST00000365440 108 ntBASIC1.37□□□□□ -2.19
TDP1Q9NUW8 SNORA2B-201ENST00000384583 137 ntBASIC1.37□□□□□ -2.19
TDP1Q9NUW8 MIR222-201ENST00000384992 110 ntBASIC1.37□□□□□ -2.19
TDP1Q9NUW8 RNU6-735P-201ENST00000410612 107 ntBASIC1.37□□□□□ -2.19
TDP1Q9NUW8 RNU4-69P-201ENST00000410677 143 ntBASIC1.37□□□□□ -2.19
TDP1Q9NUW8 MRPL35P3-201ENST00000421557 364 ntBASIC1.37□□□□□ -2.19
TDP1Q9NUW8 RNU7-90P-201ENST00000459216 62 ntBASIC1.37□□□□□ -2.19
TDP1Q9NUW8 AC036111.3-201ENST00000526389 112 ntBASIC1.37□□□□□ -2.19
TDP1Q9NUW8 MIR3660-201ENST00000584845 100 ntBASIC1.37□□□□□ -2.19
TDP1Q9NUW8 AC008163.1-202ENST00000636004 2889 ntBASIC1.36□□□□□ -2.19
TDP1Q9NUW8 Y_RNA.291-201ENST00000364886 113 ntBASIC1.36□□□□□ -2.19
TDP1Q9NUW8 SNORA32-201ENST00000384072 121 ntBASIC1.36□□□□□ -2.19
TDP1Q9NUW8 MIR563-201ENST00000385080 79 ntBASIC1.36□□□□□ -2.19
TDP1Q9NUW8 MIR759-201ENST00000390224 91 ntBASIC1.36□□□□□ -2.19
TDP1Q9NUW8 SNORD12-201ENST00000391002 90 ntBASIC1.36□□□□□ -2.19
TDP1Q9NUW8 SNORA40.6-201ENST00000391153 128 ntBASIC1.36□□□□□ -2.19
TDP1Q9NUW8 MIR1270-201ENST00000459320 83 ntBASIC1.36□□□□□ -2.19
TDP1Q9NUW8 AC004223.1-201ENST00000479840 271 ntBASIC1.36□□□□□ -2.19
TDP1Q9NUW8 AC023827.1-201ENST00000569247 97 ntBASIC1.36□□□□□ -2.19
TDP1Q9NUW8 uc_338.6-201ENST00000613544 171 ntBASIC1.36□□□□□ -2.19
TDP1Q9NUW8 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.36□□□□□ -2.19
TDP1Q9NUW8 SNORD113.3-201ENST00000364630 78 ntBASIC1.35□□□□□ -2.19
TDP1Q9NUW8 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
TDP1Q9NUW8 RNU6-1165P-201ENST00000410119 107 ntBASIC1.35□□□□□ -2.19
TDP1Q9NUW8 RNA5SP237-201ENST00000410414 113 ntBASIC1.35□□□□□ -2.19
TDP1Q9NUW8 RNU6-955P-201ENST00000410497 104 ntBASIC1.35□□□□□ -2.19
TDP1Q9NUW8 RNA5SP61-201ENST00000516453 100 ntBASIC1.35□□□□□ -2.19
TDP1Q9NUW8 RNU7-6P-201ENST00000516845 62 ntBASIC1.35□□□□□ -2.19
TDP1Q9NUW8 MIR3163-201ENST00000581592 73 ntBASIC1.35□□□□□ -2.19
TDP1Q9NUW8 MIR6504-201ENST00000613520 61 ntBASIC1.35□□□□□ -2.19
TDP1Q9NUW8 AL662814.1-201ENST00000617364 121 ntBASIC1.35□□□□□ -2.19
TDP1Q9NUW8 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
TDP1Q9NUW8 AC002429.1-201ENST00000437672 148 ntBASIC1.34□□□□□ -2.19
TDP1Q9NUW8 Y_RNA.649-201ENST00000459077 103 ntBASIC1.34□□□□□ -2.19
TDP1Q9NUW8 RNA5SP102-201ENST00000516865 106 ntBASIC1.34□□□□□ -2.19
TDP1Q9NUW8 RNU7-35P-201ENST00000517174 62 ntBASIC1.34□□□□□ -2.19
TDP1Q9NUW8 AC141846.1-201ENST00000568348 142 ntBASIC1.34□□□□□ -2.19
TDP1Q9NUW8 AL670379.3-201ENST00000605040 251 ntBASIC1.34□□□□□ -2.19
TDP1Q9NUW8 AC106800.4-201ENST00000614905 153 ntBASIC1.34□□□□□ -2.19
TDP1Q9NUW8 AC027335.2-201ENST00000624030 375 ntBASIC1.34□□□□□ -2.19
TDP1Q9NUW8 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
TDP1Q9NUW8 MIR30D-201ENST00000362283 70 ntBASIC1.33□□□□□ -2.2
TDP1Q9NUW8 MIR548A3-201ENST00000385297 97 ntBASIC1.33□□□□□ -2.2
TDP1Q9NUW8 AC063976.4-201ENST00000421971 163 ntBASIC1.33□□□□□ -2.2
TDP1Q9NUW8 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.33□□□□□ -2.2
TDP1Q9NUW8 AC019288.1-201ENST00000557918 224 ntBASIC1.33□□□□□ -2.2
TDP1Q9NUW8 MIR548AI-201ENST00000579940 88 ntBASIC1.33□□□□□ -2.2
TDP1Q9NUW8 AC012676.2-201ENST00000619258 186 ntBASIC1.33□□□□□ -2.2
TDP1Q9NUW8 MIR26B-201ENST00000362251 77 ntBASIC1.32□□□□□ -2.2
TDP1Q9NUW8 SNORD111-201ENST00000408139 94 ntBASIC1.32□□□□□ -2.2
TDP1Q9NUW8 RNU6-1086P-201ENST00000410930 100 ntBASIC1.32□□□□□ -2.2
TDP1Q9NUW8 snoU13.21-201ENST00000459368 105 ntBASIC1.32□□□□□ -2.2
TDP1Q9NUW8 RNU7-79P-201ENST00000516082 62 ntBASIC1.32□□□□□ -2.2
TDP1Q9NUW8 MTND5P34-201ENST00000568888 325 ntBASIC1.32□□□□□ -2.2
TDP1Q9NUW8 AC087741.2-201ENST00000619415 172 ntBASIC1.32□□□□□ -2.2
TDP1Q9NUW8 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.32□□□□□ -2.2
TDP1Q9NUW8 RNY4P6-201ENST00000363667 96 ntBASIC1.31□□□□□ -2.2
TDP1Q9NUW8 MIR548A1-201ENST00000385041 97 ntBASIC1.31□□□□□ -2.2
TDP1Q9NUW8 MIR150-201ENST00000385048 84 ntBASIC1.31□□□□□ -2.2
TDP1Q9NUW8 SNORD77B-201ENST00000391112 67 ntBASIC1.31□□□□□ -2.2
TDP1Q9NUW8 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.31□□□□□ -2.2
TDP1Q9NUW8 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.3□□□□□ -2.2
TDP1Q9NUW8 RNY1P13-201ENST00000365030 105 ntBASIC1.3□□□□□ -2.2
TDP1Q9NUW8 RNU6-476P-201ENST00000384726 107 ntBASIC1.3□□□□□ -2.2
TDP1Q9NUW8 MIR548D2-201ENST00000384955 97 ntBASIC1.3□□□□□ -2.2
TDP1Q9NUW8 MIR758-201ENST00000390227 88 ntBASIC1.3□□□□□ -2.2
TDP1Q9NUW8 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.3□□□□□ -2.2
TDP1Q9NUW8 RNU6-1064P-201ENST00000410626 104 ntBASIC1.3□□□□□ -2.2
TDP1Q9NUW8 RNU6-94P-201ENST00000607728 107 ntBASIC1.3□□□□□ -2.2
TDP1Q9NUW8 RNU6-834P-201ENST00000362367 110 ntBASIC1.29□□□□□ -2.2
TDP1Q9NUW8 RNU6-1290P-201ENST00000362957 109 ntBASIC1.29□□□□□ -2.2
TDP1Q9NUW8 Y_RNA.273-201ENST00000364703 102 ntBASIC1.29□□□□□ -2.2
TDP1Q9NUW8 RNU6-1144P-201ENST00000384247 104 ntBASIC1.29□□□□□ -2.2
TDP1Q9NUW8 MT-TF-201ENST00000387314 71 ntBASIC1.29□□□□□ -2.2
TDP1Q9NUW8 MIR18B-201ENST00000454574 71 ntBASIC1.29□□□□□ -2.2
TDP1Q9NUW8 AC007012.1-201ENST00000567192 175 ntBASIC1.29□□□□□ -2.2
TDP1Q9NUW8 SNORA4-201ENST00000584302 138 ntBASIC1.29□□□□□ -2.2
TDP1Q9NUW8 SNORD115-19-201ENST00000363098 82 ntBASIC1.28□□□□□ -2.2
TDP1Q9NUW8 Y_RNA.116-201ENST00000363292 103 ntBASIC1.28□□□□□ -2.2
TDP1Q9NUW8 SNORD115-18-201ENST00000363293 82 ntBASIC1.28□□□□□ -2.2
TDP1Q9NUW8 Y_RNA.224-201ENST00000364308 111 ntBASIC1.28□□□□□ -2.2
TDP1Q9NUW8 SNORD115-17-201ENST00000364612 82 ntBASIC1.28□□□□□ -2.2
TDP1Q9NUW8 Y_RNA.344-201ENST00000365381 112 ntBASIC1.28□□□□□ -2.2
TDP1Q9NUW8 RNU6-949P-201ENST00000384040 107 ntBASIC1.28□□□□□ -2.2
TDP1Q9NUW8 RNU6-616P-201ENST00000384353 107 ntBASIC1.28□□□□□ -2.2
TDP1Q9NUW8 SNORD83.1-201ENST00000411362 77 ntBASIC1.28□□□□□ -2.2
TDP1Q9NUW8 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.28□□□□□ -2.2
TDP1Q9NUW8 Y_RNA.773-201ENST00000607168 90 ntBASIC1.28□□□□□ -2.2
TDP1Q9NUW8 MIR7974-201ENST00000615835 79 ntBASIC1.28□□□□□ -2.2
TDP1Q9NUW8 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
TDP1Q9NUW8 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
TDP1Q9NUW8 Y_RNA.191-201ENST00000363972 113 ntBASIC1.27□□□□□ -2.21
TDP1Q9NUW8 Y_RNA.362-201ENST00000365518 110 ntBASIC1.27□□□□□ -2.21
TDP1Q9NUW8 RNU6-1056P-201ENST00000383996 107 ntBASIC1.27□□□□□ -2.21
TDP1Q9NUW8 Y_RNA.508-201ENST00000384502 114 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 171.6 ms