Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 MIR606-201ENST00000384851 96 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-493P-201ENST00000391321 108 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 RNU2-38P-201ENST00000410856 79 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 SUMO1P3-201ENST00000439961 304 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 SNORD127-201ENST00000458892 86 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 MTND1P19-201ENST00000511780 315 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 SNORA62.5-201ENST00000516634 120 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.697-201ENST00000516776 113 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-1258P-201ENST00000516911 111 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 RNA5SP47-201ENST00000517230 109 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 MTND5P34-201ENST00000568888 325 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 MIR4514-201ENST00000581410 57 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 AC010487.4-201ENST00000637027 61 ntBASIC0.09□□□□□ -2.4
ZCCHC3Q9NUD5 MTND5P32-201ENST00000560711 1802 ntBASIC0.08□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.171-201ENST00000363760 102 ntBASIC0.08□□□□□ -2.4
ZCCHC3Q9NUD5 RNY1-201ENST00000364228 113 ntBASIC0.08□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-1229P-201ENST00000364295 107 ntBASIC0.08□□□□□ -2.4
ZCCHC3Q9NUD5 RNY1P6-201ENST00000384193 109 ntBASIC0.08□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.562-201ENST00000384695 113 ntBASIC0.08□□□□□ -2.4
ZCCHC3Q9NUD5 SNORD28-201ENST00000384706 75 ntBASIC0.08□□□□□ -2.4
ZCCHC3Q9NUD5 AC069271.1-201ENST00000445577 156 ntBASIC0.08□□□□□ -2.4
ZCCHC3Q9NUD5 RNU7-79P-201ENST00000516082 62 ntBASIC0.08□□□□□ -2.4
ZCCHC3Q9NUD5 MIR4639-201ENST00000584938 69 ntBASIC0.08□□□□□ -2.4
ZCCHC3Q9NUD5 AC091304.10-201ENST00000641554 121 ntBASIC0.08□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.47-201ENST00000362697 108 ntBASIC0.07□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.118-201ENST00000363300 101 ntBASIC0.07□□□□□ -2.4
ZCCHC3Q9NUD5 SNORA25.7-201ENST00000364375 127 ntBASIC0.07□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.288-201ENST00000364854 92 ntBASIC0.07□□□□□ -2.4
ZCCHC3Q9NUD5 RNA5SP227-201ENST00000516184 113 ntBASIC0.07□□□□□ -2.4
ZCCHC3Q9NUD5 RNU7-35P-201ENST00000517174 62 ntBASIC0.07□□□□□ -2.4
ZCCHC3Q9NUD5 MIR6755-201ENST00000619993 66 ntBASIC0.07□□□□□ -2.4
ZCCHC3Q9NUD5 SNORA42.1-201ENST00000363515 137 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.149-201ENST00000363558 117 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 RNY1P4-201ENST00000384595 115 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.571-201ENST00000384753 98 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 SNORD58.1-201ENST00000391313 66 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 RNA5SP144-201ENST00000410846 116 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-1194P-201ENST00000516208 104 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 MRPS18CP4-201ENST00000535821 231 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 AC008737.2-201ENST00000599446 118 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.812-201ENST00000610788 101 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.784-201ENST00000613803 101 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.787-201ENST00000616522 101 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.780-201ENST00000617336 101 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.801-201ENST00000619005 101 ntBASIC0.06□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.182-201ENST00000363880 111 ntBASIC0.05□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.355-201ENST00000365462 98 ntBASIC0.05□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.508-201ENST00000384502 114 ntBASIC0.05□□□□□ -2.4
ZCCHC3Q9NUD5 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.05□□□□□ -2.4
ZCCHC3Q9NUD5 MIR4308-201ENST00000580634 81 ntBASIC0.05□□□□□ -2.4
ZCCHC3Q9NUD5 SNORA9.1-201ENST00000362412 131 ntBASIC0.04□□□□□ -2.4
ZCCHC3Q9NUD5 SNORA63-201ENST00000363450 132 ntBASIC0.04□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-923P-201ENST00000364753 107 ntBASIC0.04□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-1126P-201ENST00000384002 107 ntBASIC0.04□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.476-201ENST00000384347 108 ntBASIC0.04□□□□□ -2.4
ZCCHC3Q9NUD5 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.04□□□□□ -2.4
ZCCHC3Q9NUD5 PVT1_3.1-201ENST00000620853 95 ntBASIC0.04□□□□□ -2.4
ZCCHC3Q9NUD5 AC244669.1-204ENST00000621564 178 ntBASIC0.04□□□□□ -2.4
ZCCHC3Q9NUD5 SNORD115-2-201ENST00000362842 82 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 SNORD27-201ENST00000363981 72 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 RNU4-67P-201ENST00000364569 141 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-275P-201ENST00000364910 107 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 SNORD115-20-201ENST00000365099 82 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.470-201ENST00000384307 117 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-738P-201ENST00000384531 106 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 RNU4-70P-201ENST00000384579 139 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 Y_RNA.626-201ENST00000411288 95 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 MTND2P23-201ENST00000422990 651 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 AL358176.2-201ENST00000425769 204 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 RNU7-113P-201ENST00000459273 62 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-848P-201ENST00000515948 107 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-617P-201ENST00000516147 107 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-473P-201ENST00000516164 107 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 RNU6-1049P-201ENST00000516414 107 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 TUG1_4.1-201ENST00000619464 181 ntBASIC0.03□□□□□ -2.4
ZCCHC3Q9NUD5 RNU4-58P-201ENST00000363192 141 ntBASIC0.02□□□□□ -2.41
ZCCHC3Q9NUD5 RNA5SP214-201ENST00000363378 118 ntBASIC0.02□□□□□ -2.41
ZCCHC3Q9NUD5 SNORD114-9-201ENST00000364370 72 ntBASIC0.02□□□□□ -2.41
ZCCHC3Q9NUD5 Y_RNA.423-201ENST00000384057 113 ntBASIC0.02□□□□□ -2.41
ZCCHC3Q9NUD5 MIRLET7F2-201ENST00000385277 83 ntBASIC0.02□□□□□ -2.41
ZCCHC3Q9NUD5 RNU6-531P-201ENST00000516694 104 ntBASIC0.02□□□□□ -2.41
ZCCHC3Q9NUD5 DEFB131E-201ENST00000532329 154 ntBASIC0.02□□□□□ -2.41
ZCCHC3Q9NUD5 RN7SL793P-201ENST00000583259 296 ntBASIC0.02□□□□□ -2.41
ZCCHC3Q9NUD5 AC023932.2-201ENST00000603176 175 ntBASIC0.02□□□□□ -2.41
ZCCHC3Q9NUD5 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.02□□□□□ -2.41
ZCCHC3Q9NUD5 Y_RNA.20-201ENST00000362479 113 ntBASIC0.01□□□□□ -2.41
ZCCHC3Q9NUD5 Y_RNA.52-201ENST00000362760 96 ntBASIC0.01□□□□□ -2.41
ZCCHC3Q9NUD5 RNA5SP133-201ENST00000363368 119 ntBASIC0.01□□□□□ -2.41
ZCCHC3Q9NUD5 RNU6-187P-201ENST00000384139 106 ntBASIC0.01□□□□□ -2.41
ZCCHC3Q9NUD5 Y_RNA.459-201ENST00000384251 102 ntBASIC0.01□□□□□ -2.41
ZCCHC3Q9NUD5 Y_RNA.556-201ENST00000384677 113 ntBASIC0.01□□□□□ -2.41
ZCCHC3Q9NUD5 PCNPP3-201ENST00000393579 471 ntBASIC0.01□□□□□ -2.41
ZCCHC3Q9NUD5 AL022718.1-201ENST00000412004 84 ntBASIC0.01□□□□□ -2.41
ZCCHC3Q9NUD5 MIR4768-201ENST00000585270 74 ntBASIC0.01□□□□□ -2.41
ZCCHC3Q9NUD5 Y_RNA.65-201ENST00000362846 100 ntBASIC0□□□□□ -2.41
ZCCHC3Q9NUD5 Y_RNA.75-201ENST00000362927 97 ntBASIC0□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 222.8 ms