Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 AC036111.3-201ENST00000526389 112 ntBASIC1.13□□□□□ -2.23
HIPK3Q9H422 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.13□□□□□ -2.23
HIPK3Q9H422 Y_RNA.168-201ENST00000363740 102 ntBASIC1.12□□□□□ -2.23
HIPK3Q9H422 SNORD113.3-201ENST00000364630 78 ntBASIC1.12□□□□□ -2.23
HIPK3Q9H422 SNORA2B-201ENST00000384583 137 ntBASIC1.12□□□□□ -2.23
HIPK3Q9H422 AL022718.1-201ENST00000412004 84 ntBASIC1.12□□□□□ -2.23
HIPK3Q9H422 AL158147.1-201ENST00000443970 75 ntBASIC1.12□□□□□ -2.23
HIPK3Q9H422 RPS29P28-201ENST00000446439 141 ntBASIC1.12□□□□□ -2.23
HIPK3Q9H422 RNU2-35P-201ENST00000516446 142 ntBASIC1.12□□□□□ -2.23
HIPK3Q9H422 RNU6-1258P-201ENST00000516911 111 ntBASIC1.12□□□□□ -2.23
HIPK3Q9H422 AC023827.1-201ENST00000569247 97 ntBASIC1.12□□□□□ -2.23
HIPK3Q9H422 AL137067.1-201ENST00000615933 120 ntBASIC1.12□□□□□ -2.23
HIPK3Q9H422 Y_RNA.171-201ENST00000363760 102 ntBASIC1.11□□□□□ -2.23
HIPK3Q9H422 RNU6-647P-201ENST00000364243 107 ntBASIC1.11□□□□□ -2.23
HIPK3Q9H422 MIR19B1-201ENST00000384829 87 ntBASIC1.11□□□□□ -2.23
HIPK3Q9H422 snoU13.2-201ENST00000459201 104 ntBASIC1.11□□□□□ -2.23
HIPK3Q9H422 RNU7-164P-201ENST00000459221 62 ntBASIC1.11□□□□□ -2.23
HIPK3Q9H422 RNA5SP404-201ENST00000517118 132 ntBASIC1.11□□□□□ -2.23
HIPK3Q9H422 IGKV1-22-201ENST00000524313 326 ntBASIC1.11□□□□□ -2.23
HIPK3Q9H422 CYP3A137P-201ENST00000562436 69 ntBASIC1.11□□□□□ -2.23
HIPK3Q9H422 AC106800.4-201ENST00000614905 153 ntBASIC1.11□□□□□ -2.23
HIPK3Q9H422 RNU4-38P-201ENST00000364472 129 ntBASIC1.1□□□□□ -2.23
HIPK3Q9H422 MIR539-201ENST00000365690 78 ntBASIC1.1□□□□□ -2.23
HIPK3Q9H422 MIR588-201ENST00000384900 83 ntBASIC1.1□□□□□ -2.23
HIPK3Q9H422 SNORD111-201ENST00000408139 94 ntBASIC1.1□□□□□ -2.23
HIPK3Q9H422 AL512326.2-201ENST00000426359 151 ntBASIC1.1□□□□□ -2.23
HIPK3Q9H422 RNU7-62P-201ENST00000458856 62 ntBASIC1.1□□□□□ -2.23
HIPK3Q9H422 RNU6-1211P-201ENST00000459179 105 ntBASIC1.1□□□□□ -2.23
HIPK3Q9H422 RNU7-123P-201ENST00000515911 60 ntBASIC1.1□□□□□ -2.23
HIPK3Q9H422 RNU6-971P-201ENST00000516920 106 ntBASIC1.1□□□□□ -2.23
HIPK3Q9H422 MIR3973-201ENST00000579824 107 ntBASIC1.1□□□□□ -2.23
HIPK3Q9H422 MIR6857-201ENST00000613267 93 ntBASIC1.1□□□□□ -2.23
HIPK3Q9H422 MIR6740-201ENST00000618268 113 ntBASIC1.1□□□□□ -2.23
HIPK3Q9H422 Y_RNA.298-201ENST00000364960 107 ntBASIC1.09□□□□□ -2.23
HIPK3Q9H422 MIR532-201ENST00000385025 91 ntBASIC1.09□□□□□ -2.23
HIPK3Q9H422 Y_RNA.617-201ENST00000410920 90 ntBASIC1.09□□□□□ -2.23
HIPK3Q9H422 RNU7-113P-201ENST00000459273 62 ntBASIC1.09□□□□□ -2.23
HIPK3Q9H422 AC113410.1-201ENST00000505029 247 ntBASIC1.09□□□□□ -2.23
HIPK3Q9H422 RN7SKP19-201ENST00000516016 252 ntBASIC1.09□□□□□ -2.23
HIPK3Q9H422 AC004812.1-201ENST00000540773 146 ntBASIC1.09□□□□□ -2.23
HIPK3Q9H422 RN7SL793P-201ENST00000583259 296 ntBASIC1.09□□□□□ -2.23
HIPK3Q9H422 RNU6-235P-201ENST00000362644 107 ntBASIC1.08□□□□□ -2.24
HIPK3Q9H422 SNORD115-2-201ENST00000362842 82 ntBASIC1.08□□□□□ -2.24
HIPK3Q9H422 SNORD115-20-201ENST00000365099 82 ntBASIC1.08□□□□□ -2.24
HIPK3Q9H422 SNORA22-201ENST00000383907 134 ntBASIC1.08□□□□□ -2.24
HIPK3Q9H422 Y_RNA.531-201ENST00000384589 121 ntBASIC1.08□□□□□ -2.24
HIPK3Q9H422 SNORA22C-201ENST00000384614 134 ntBASIC1.08□□□□□ -2.24
HIPK3Q9H422 MIR563-201ENST00000385080 79 ntBASIC1.08□□□□□ -2.24
HIPK3Q9H422 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
HIPK3Q9H422 OR2A41P-201ENST00000473586 105 ntBASIC1.08□□□□□ -2.24
HIPK3Q9H422 RNY4P20-201ENST00000516678 93 ntBASIC1.08□□□□□ -2.24
HIPK3Q9H422 RNU1-124P-201ENST00000363861 145 ntBASIC1.07□□□□□ -2.24
HIPK3Q9H422 Y_RNA.470-201ENST00000384307 117 ntBASIC1.07□□□□□ -2.24
HIPK3Q9H422 RNU6-1165P-201ENST00000410119 107 ntBASIC1.07□□□□□ -2.24
HIPK3Q9H422 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.07□□□□□ -2.24
HIPK3Q9H422 TMSB4XP3-201ENST00000445144 114 ntBASIC1.07□□□□□ -2.24
HIPK3Q9H422 uc_338.6-201ENST00000613544 171 ntBASIC1.07□□□□□ -2.24
HIPK3Q9H422 AC012676.2-201ENST00000619258 186 ntBASIC1.07□□□□□ -2.24
HIPK3Q9H422 SNORA18-201ENST00000384416 132 ntBASIC1.06□□□□□ -2.24
HIPK3Q9H422 RNY1P4-201ENST00000384595 115 ntBASIC1.06□□□□□ -2.24
HIPK3Q9H422 RNU6-1237P-201ENST00000384777 107 ntBASIC1.06□□□□□ -2.24
HIPK3Q9H422 MIR216A-201ENST00000385063 110 ntBASIC1.06□□□□□ -2.24
HIPK3Q9H422 snoU13.21-201ENST00000459368 105 ntBASIC1.06□□□□□ -2.24
HIPK3Q9H422 RNA5SP33-201ENST00000516687 98 ntBASIC1.06□□□□□ -2.24
HIPK3Q9H422 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.06□□□□□ -2.24
HIPK3Q9H422 AC103810.9-201ENST00000606688 112 ntBASIC1.06□□□□□ -2.24
HIPK3Q9H422 RNU6-94P-201ENST00000607728 107 ntBASIC1.06□□□□□ -2.24
HIPK3Q9H422 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
HIPK3Q9H422 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
HIPK3Q9H422 RNU6-81P-201ENST00000365608 104 ntBASIC1.05□□□□□ -2.24
HIPK3Q9H422 RNU6-781P-201ENST00000516377 101 ntBASIC1.05□□□□□ -2.24
HIPK3Q9H422 MIR3910-1-201ENST00000580936 111 ntBASIC1.05□□□□□ -2.24
HIPK3Q9H422 AL662814.1-201ENST00000617364 121 ntBASIC1.05□□□□□ -2.24
HIPK3Q9H422 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
HIPK3Q9H422 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
HIPK3Q9H422 MIR30D-201ENST00000362283 70 ntBASIC1.04□□□□□ -2.24
HIPK3Q9H422 RNA5SP237-201ENST00000410414 113 ntBASIC1.04□□□□□ -2.24
HIPK3Q9H422 RNA5SP136-201ENST00000410906 107 ntBASIC1.04□□□□□ -2.24
HIPK3Q9H422 MIR18B-201ENST00000454574 71 ntBASIC1.04□□□□□ -2.24
HIPK3Q9H422 SNORD124-201ENST00000459577 104 ntBASIC1.04□□□□□ -2.24
HIPK3Q9H422 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.04□□□□□ -2.24
HIPK3Q9H422 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.04□□□□□ -2.24
HIPK3Q9H422 Y_RNA.218-201ENST00000364218 104 ntBASIC1.03□□□□□ -2.24
HIPK3Q9H422 RNU6-80P-201ENST00000384195 107 ntBASIC1.03□□□□□ -2.24
HIPK3Q9H422 RNU6-1104P-201ENST00000384723 104 ntBASIC1.03□□□□□ -2.24
HIPK3Q9H422 MIR200A-201ENST00000384875 90 ntBASIC1.03□□□□□ -2.24
HIPK3Q9H422 MIR1263-201ENST00000408324 86 ntBASIC1.03□□□□□ -2.24
HIPK3Q9H422 RNU6-994P-201ENST00000410507 111 ntBASIC1.03□□□□□ -2.24
HIPK3Q9H422 RNU6-1061P-201ENST00000516530 99 ntBASIC1.03□□□□□ -2.24
HIPK3Q9H422 RNU6-1234P-201ENST00000516877 103 ntBASIC1.03□□□□□ -2.24
HIPK3Q9H422 AC022523.2-201ENST00000561045 150 ntBASIC1.03□□□□□ -2.24
HIPK3Q9H422 MIR548AE2-201ENST00000583456 67 ntBASIC1.03□□□□□ -2.24
HIPK3Q9H422 Y_RNA.71-201ENST00000362892 104 ntBASIC1.02□□□□□ -2.25
HIPK3Q9H422 Y_RNA.299-201ENST00000364973 94 ntBASIC1.02□□□□□ -2.25
HIPK3Q9H422 RNU6-934P-201ENST00000365154 107 ntBASIC1.02□□□□□ -2.25
HIPK3Q9H422 SNORD58C-201ENST00000365223 64 ntBASIC1.02□□□□□ -2.25
HIPK3Q9H422 RNU6-959P-201ENST00000384671 107 ntBASIC1.02□□□□□ -2.25
HIPK3Q9H422 MIRLET7F2-201ENST00000385277 83 ntBASIC1.02□□□□□ -2.25
HIPK3Q9H422 MT-TF-201ENST00000387314 71 ntBASIC1.02□□□□□ -2.25
HIPK3Q9H422 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 211.8 ms