Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 AC092634.7-201ENST00000621022 103 ntBASIC0.35□□□□□ -2.35
C9orf40Q8IXQ3 MIR411-201ENST00000362239 96 ntBASIC0.34□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.42-201ENST00000362660 108 ntBASIC0.34□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.83-201ENST00000363005 113 ntBASIC0.34□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-403P-201ENST00000363163 104 ntBASIC0.34□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-574P-201ENST00000384265 107 ntBASIC0.34□□□□□ -2.36
C9orf40Q8IXQ3 SNORA18-201ENST00000384416 132 ntBASIC0.34□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-342P-201ENST00000384521 104 ntBASIC0.34□□□□□ -2.36
C9orf40Q8IXQ3 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.34□□□□□ -2.36
C9orf40Q8IXQ3 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.34□□□□□ -2.36
C9orf40Q8IXQ3 SNORA68.3-201ENST00000515906 83 ntBASIC0.34□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.435-201ENST00000384095 112 ntBASIC0.33□□□□□ -2.36
C9orf40Q8IXQ3 RNY1P6-201ENST00000384193 109 ntBASIC0.33□□□□□ -2.36
C9orf40Q8IXQ3 RNU5E-9P-201ENST00000411164 104 ntBASIC0.33□□□□□ -2.36
C9orf40Q8IXQ3 MIR3678-201ENST00000578455 94 ntBASIC0.33□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.757-201ENST00000578934 114 ntBASIC0.33□□□□□ -2.36
C9orf40Q8IXQ3 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.33□□□□□ -2.36
C9orf40Q8IXQ3 AL589743.1-201ENST00000551932 2712 ntBASIC0.33□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.13-201ENST00000362403 112 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.52-201ENST00000362760 96 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-1020P-201ENST00000363684 107 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 RNA5SP517-201ENST00000364724 117 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 VTRNA1-3-201ENST00000365645 89 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-47P-201ENST00000383866 107 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.393-201ENST00000383936 102 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-949P-201ENST00000384040 107 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.617-201ENST00000410920 90 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 SNORA25.12-201ENST00000516202 82 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 RNA5SP94-201ENST00000516917 108 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 AP003327.1-201ENST00000529684 127 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 MIR6082-201ENST00000613604 109 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 MIR7111-201ENST00000619751 72 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 uc_338.16-201ENST00000621804 95 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 AC099654.10-201ENST00000640395 161 ntBASIC0.32□□□□□ -2.36
C9orf40Q8IXQ3 MIRLET7D-201ENST00000362263 87 ntBASIC0.31□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-768P-201ENST00000384683 107 ntBASIC0.31□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.588-201ENST00000391254 102 ntBASIC0.31□□□□□ -2.36
C9orf40Q8IXQ3 AC107027.2-201ENST00000512197 115 ntBASIC0.31□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-1258P-201ENST00000516911 111 ntBASIC0.31□□□□□ -2.36
C9orf40Q8IXQ3 MIR4491-201ENST00000581087 68 ntBASIC0.31□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.171-201ENST00000363760 102 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-312P-201ENST00000364629 107 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 RNY1P13-201ENST00000365030 105 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 SNORA50A-201ENST00000384225 134 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-463P-201ENST00000384340 107 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 SNORA72.6-201ENST00000384520 129 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 MIR216A-201ENST00000385063 110 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 MIR518A1-201ENST00000385068 85 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 RNA5SP144-201ENST00000410846 116 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-1086P-201ENST00000410930 100 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 SNORA40.8-201ENST00000411034 126 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 SNORD71-201ENST00000411292 86 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-469P-201ENST00000516253 101 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 AC133485.4-201ENST00000561835 220 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 AC009779.6-201ENST00000603972 165 ntBASIC0.3□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-349P-201ENST00000362402 107 ntBASIC0.29□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-1082P-201ENST00000364574 107 ntBASIC0.29□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.337-201ENST00000365312 102 ntBASIC0.29□□□□□ -2.36
C9orf40Q8IXQ3 AL022718.1-201ENST00000412004 84 ntBASIC0.29□□□□□ -2.36
C9orf40Q8IXQ3 AC096949.1-201ENST00000412047 152 ntBASIC0.29□□□□□ -2.36
C9orf40Q8IXQ3 RNU7-113P-201ENST00000459273 62 ntBASIC0.29□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-765P-201ENST00000516916 99 ntBASIC0.29□□□□□ -2.36
C9orf40Q8IXQ3 AL353621.2-201ENST00000605340 133 ntBASIC0.29□□□□□ -2.36
C9orf40Q8IXQ3 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.29□□□□□ -2.36
C9orf40Q8IXQ3 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.144-201ENST00000363521 113 ntBASIC0.28□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-818P-201ENST00000364837 108 ntBASIC0.28□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.489-201ENST00000384410 101 ntBASIC0.28□□□□□ -2.36
C9orf40Q8IXQ3 Y_RNA.567-201ENST00000384736 106 ntBASIC0.28□□□□□ -2.36
C9orf40Q8IXQ3 MIR644A-201ENST00000385262 94 ntBASIC0.28□□□□□ -2.36
C9orf40Q8IXQ3 RNU7-79P-201ENST00000516082 62 ntBASIC0.28□□□□□ -2.36
C9orf40Q8IXQ3 RNU6-1219P-201ENST00000516143 112 ntBASIC0.28□□□□□ -2.36
C9orf40Q8IXQ3 RNA5SP236-201ENST00000516169 116 ntBASIC0.28□□□□□ -2.36
C9orf40Q8IXQ3 SNORA25.18-201ENST00000607153 114 ntBASIC0.28□□□□□ -2.36
C9orf40Q8IXQ3 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.28□□□□□ -2.36
C9orf40Q8IXQ3 SNORD114-23-201ENST00000363536 72 ntBASIC0.27□□□□□ -2.37
C9orf40Q8IXQ3 Y_RNA.233-201ENST00000364407 101 ntBASIC0.27□□□□□ -2.37
C9orf40Q8IXQ3 RNU6-690P-201ENST00000365242 106 ntBASIC0.27□□□□□ -2.37
C9orf40Q8IXQ3 Y_RNA.470-201ENST00000384307 117 ntBASIC0.27□□□□□ -2.37
C9orf40Q8IXQ3 SNORA8.2-201ENST00000384372 139 ntBASIC0.27□□□□□ -2.37
C9orf40Q8IXQ3 SNORA75.5-201ENST00000391291 81 ntBASIC0.27□□□□□ -2.37
C9orf40Q8IXQ3 AC022523.2-201ENST00000561045 150 ntBASIC0.27□□□□□ -2.37
C9orf40Q8IXQ3 AC130289.1-201ENST00000577321 73 ntBASIC0.27□□□□□ -2.37
C9orf40Q8IXQ3 RN7SL793P-201ENST00000583259 296 ntBASIC0.27□□□□□ -2.37
C9orf40Q8IXQ3 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.27□□□□□ -2.37
C9orf40Q8IXQ3 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.26□□□□□ -2.37
C9orf40Q8IXQ3 AC090625.1-201ENST00000357130 210 ntBASIC0.26□□□□□ -2.37
C9orf40Q8IXQ3 Y_RNA.174-201ENST00000363781 105 ntBASIC0.26□□□□□ -2.37
C9orf40Q8IXQ3 Y_RNA.274-201ENST00000364714 101 ntBASIC0.26□□□□□ -2.37
C9orf40Q8IXQ3 AL512326.2-201ENST00000426359 151 ntBASIC0.26□□□□□ -2.37
C9orf40Q8IXQ3 RNA5SP33-201ENST00000516687 98 ntBASIC0.26□□□□□ -2.37
C9orf40Q8IXQ3 SNORA25.16-201ENST00000516741 121 ntBASIC0.26□□□□□ -2.37
C9orf40Q8IXQ3 RNU7-35P-201ENST00000517174 62 ntBASIC0.26□□□□□ -2.37
C9orf40Q8IXQ3 AC022559.1-201ENST00000520905 205 ntBASIC0.26□□□□□ -2.37
C9orf40Q8IXQ3 MIR6844-201ENST00000637122 62 ntBASIC0.26□□□□□ -2.37
C9orf40Q8IXQ3 MIR103A1-201ENST00000362165 78 ntBASIC0.25□□□□□ -2.37
C9orf40Q8IXQ3 Y_RNA.32-201ENST00000362589 110 ntBASIC0.25□□□□□ -2.37
C9orf40Q8IXQ3 SNORD115-2-201ENST00000362842 82 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms