Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RNU6-1336P-201ENST00000383886 109 ntBASIC0.24□□□□□ -2.37
SKA3Q8IX90 RNU6-949P-201ENST00000384040 107 ntBASIC0.24□□□□□ -2.37
SKA3Q8IX90 AC096949.1-201ENST00000412047 152 ntBASIC0.24□□□□□ -2.37
SKA3Q8IX90 AL118496.2-201ENST00000448300 230 ntBASIC0.24□□□□□ -2.37
SKA3Q8IX90 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.24□□□□□ -2.37
SKA3Q8IX90 AC022523.2-201ENST00000561045 150 ntBASIC0.24□□□□□ -2.37
SKA3Q8IX90 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.24□□□□□ -2.37
SKA3Q8IX90 Y_RNA.32-201ENST00000362589 110 ntBASIC0.23□□□□□ -2.37
SKA3Q8IX90 MIR216A-201ENST00000385063 110 ntBASIC0.23□□□□□ -2.37
SKA3Q8IX90 MIR644A-201ENST00000385262 94 ntBASIC0.23□□□□□ -2.37
SKA3Q8IX90 SNORD58.1-201ENST00000391313 66 ntBASIC0.23□□□□□ -2.37
SKA3Q8IX90 MRPS18CP4-201ENST00000535821 231 ntBASIC0.23□□□□□ -2.37
SKA3Q8IX90 MIR4491-201ENST00000581087 68 ntBASIC0.23□□□□□ -2.37
SKA3Q8IX90 MIR3128-201ENST00000581957 66 ntBASIC0.23□□□□□ -2.37
SKA3Q8IX90 U6.106-201ENST00000636360 105 ntBASIC0.23□□□□□ -2.37
SKA3Q8IX90 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
SKA3Q8IX90 Y_RNA.52-201ENST00000362760 96 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 Y_RNA.75-201ENST00000362927 97 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 SNORA36.1-201ENST00000363424 132 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 SNORD118-201ENST00000363593 134 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 Y_RNA.171-201ENST00000363760 102 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 RNY1P13-201ENST00000365030 105 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 RNU6-1327P-201ENST00000365302 105 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 Y_RNA.478-201ENST00000384358 107 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 Y_RNA.521-201ENST00000384560 114 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 RNU5E-9P-201ENST00000411164 104 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 AL512326.2-201ENST00000426359 151 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 RNU6-893P-201ENST00000458841 100 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 RNU4-71P-201ENST00000516258 113 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 Y_RNA.680-201ENST00000516441 93 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 RNU6-1258P-201ENST00000516911 111 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 RNU6-765P-201ENST00000516916 99 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 Y_RNA.757-201ENST00000578934 114 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 AC062037.2-201ENST00000610137 73 ntBASIC0.22□□□□□ -2.37
SKA3Q8IX90 RNA5SP144-201ENST00000410846 116 ntBASIC0.21□□□□□ -2.38
SKA3Q8IX90 SNRPGP12-201ENST00000449481 213 ntBASIC0.21□□□□□ -2.38
SKA3Q8IX90 AC108740.1-201ENST00000498629 225 ntBASIC0.21□□□□□ -2.38
SKA3Q8IX90 SCARNA15.1-201ENST00000516384 125 ntBASIC0.21□□□□□ -2.38
SKA3Q8IX90 SNORA25.16-201ENST00000516741 121 ntBASIC0.21□□□□□ -2.38
SKA3Q8IX90 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.21□□□□□ -2.38
SKA3Q8IX90 PVT1_3.1-201ENST00000620853 95 ntBASIC0.21□□□□□ -2.38
SKA3Q8IX90 SNORD44.1-201ENST00000363202 61 ntBASIC0.2□□□□□ -2.38
SKA3Q8IX90 RNA5SP62-201ENST00000363457 110 ntBASIC0.2□□□□□ -2.38
SKA3Q8IX90 SNORD114-23-201ENST00000363536 72 ntBASIC0.2□□□□□ -2.38
SKA3Q8IX90 Y_RNA.174-201ENST00000363781 105 ntBASIC0.2□□□□□ -2.38
SKA3Q8IX90 RNU6-291P-201ENST00000384720 107 ntBASIC0.2□□□□□ -2.38
SKA3Q8IX90 RNU6-1086P-201ENST00000410930 100 ntBASIC0.2□□□□□ -2.38
SKA3Q8IX90 RNU6-1023P-201ENST00000516137 106 ntBASIC0.2□□□□□ -2.38
SKA3Q8IX90 RNU6-1045P-201ENST00000516321 107 ntBASIC0.2□□□□□ -2.38
SKA3Q8IX90 SNORA31.14-201ENST00000516728 116 ntBASIC0.2□□□□□ -2.38
SKA3Q8IX90 Y_RNA.697-201ENST00000516776 113 ntBASIC0.2□□□□□ -2.38
SKA3Q8IX90 MTND5P34-201ENST00000568888 325 ntBASIC0.2□□□□□ -2.38
SKA3Q8IX90 Y_RNA.393-201ENST00000383936 102 ntBASIC0.19□□□□□ -2.38
SKA3Q8IX90 Y_RNA.470-201ENST00000384307 117 ntBASIC0.19□□□□□ -2.38
SKA3Q8IX90 AL022718.1-201ENST00000412004 84 ntBASIC0.19□□□□□ -2.38
SKA3Q8IX90 RNU7-113P-201ENST00000459273 62 ntBASIC0.19□□□□□ -2.38
SKA3Q8IX90 MIR4431-201ENST00000579990 94 ntBASIC0.19□□□□□ -2.38
SKA3Q8IX90 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.19□□□□□ -2.38
SKA3Q8IX90 MIR411-201ENST00000362239 96 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 RNU6-349P-201ENST00000362402 107 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 Y_RNA.162-201ENST00000363683 102 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 RNU6-1229P-201ENST00000364295 107 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 SNORA20.1-201ENST00000364790 130 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 Y_RNA.447-201ENST00000384184 113 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 Y_RNA.536-201ENST00000384621 113 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 RNU6-768P-201ENST00000384683 107 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 RNU6-535P-201ENST00000384722 107 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 RNU6-918P-201ENST00000391219 106 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 RNA5SP236-201ENST00000516169 116 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 RNU6-135P-201ENST00000516769 101 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 RNA5SP268-201ENST00000516828 124 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 RNU6-111P-201ENST00000517179 105 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 U4.1-201ENST00000620349 87 ntBASIC0.18□□□□□ -2.38
SKA3Q8IX90 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.18□□□□□ -2.38
SKA3Q8IX90 Y_RNA.118-201ENST00000363300 101 ntBASIC0.17□□□□□ -2.38
SKA3Q8IX90 RNU6-702P-201ENST00000364982 107 ntBASIC0.17□□□□□ -2.38
SKA3Q8IX90 Y_RNA.307-201ENST00000365022 117 ntBASIC0.17□□□□□ -2.38
SKA3Q8IX90 SNORA32-201ENST00000384072 121 ntBASIC0.17□□□□□ -2.38
SKA3Q8IX90 Y_RNA.435-201ENST00000384095 112 ntBASIC0.17□□□□□ -2.38
SKA3Q8IX90 MIR489-201ENST00000384923 84 ntBASIC0.17□□□□□ -2.38
SKA3Q8IX90 AC073261.1-201ENST00000429409 121 ntBASIC0.17□□□□□ -2.38
SKA3Q8IX90 SUMO1P3-201ENST00000439961 304 ntBASIC0.17□□□□□ -2.38
SKA3Q8IX90 AC107027.2-201ENST00000512197 115 ntBASIC0.17□□□□□ -2.38
SKA3Q8IX90 RNU7-35P-201ENST00000517174 62 ntBASIC0.17□□□□□ -2.38
SKA3Q8IX90 MIR7107-201ENST00000611489 80 ntBASIC0.17□□□□□ -2.38
SKA3Q8IX90 RNU6-1020P-201ENST00000363684 107 ntBASIC0.16□□□□□ -2.38
SKA3Q8IX90 Y_RNA.200-201ENST00000364018 102 ntBASIC0.16□□□□□ -2.38
SKA3Q8IX90 RNU6-690P-201ENST00000365242 106 ntBASIC0.16□□□□□ -2.38
SKA3Q8IX90 RNU6-196P-201ENST00000384315 107 ntBASIC0.16□□□□□ -2.38
SKA3Q8IX90 MTND3P2-201ENST00000438452 342 ntBASIC0.16□□□□□ -2.38
SKA3Q8IX90 RNU7-79P-201ENST00000516082 62 ntBASIC0.16□□□□□ -2.38
SKA3Q8IX90 RNU6-1194P-201ENST00000516208 104 ntBASIC0.16□□□□□ -2.38
SKA3Q8IX90 SCARNA16.5-201ENST00000517114 183 ntBASIC0.16□□□□□ -2.38
SKA3Q8IX90 DEFB131E-201ENST00000532329 154 ntBASIC0.16□□□□□ -2.38
SKA3Q8IX90 AC078938.1-201ENST00000620993 318 ntBASIC0.16□□□□□ -2.38
SKA3Q8IX90 U6.109-201ENST00000636749 87 ntBASIC0.16□□□□□ -2.38
SKA3Q8IX90 Y_RNA.83-201ENST00000363005 113 ntBASIC0.15□□□□□ -2.39
SKA3Q8IX90 RNA5SP133-201ENST00000363368 119 ntBASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 173.6 ms