Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC024614.3-201ENST00000637860 256 ntBASIC-1.45□□□□□ -2.64
USP54Q70EL1 Y_RNA.407-201ENST00000383986 113 ntBASIC-1.45□□□□□ -2.64
USP54Q70EL1 RNU6-908P-201ENST00000410160 94 ntBASIC-1.45□□□□□ -2.64
USP54Q70EL1 MTND3P8-201ENST00000412909 339 ntBASIC-1.45□□□□□ -2.64
USP54Q70EL1 RNU6-1258P-201ENST00000516911 111 ntBASIC-1.45□□□□□ -2.64
USP54Q70EL1 Y_RNA.229-201ENST00000364347 113 ntBASIC-1.46□□□□□ -2.64
USP54Q70EL1 RNU6-119P-201ENST00000364882 107 ntBASIC-1.46□□□□□ -2.64
USP54Q70EL1 Y_RNA.304-201ENST00000365011 112 ntBASIC-1.46□□□□□ -2.64
USP54Q70EL1 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.46□□□□□ -2.64
USP54Q70EL1 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC-1.46□□□□□ -2.64
USP54Q70EL1 RNU6-764P-201ENST00000516396 105 ntBASIC-1.46□□□□□ -2.64
USP54Q70EL1 RNU7-110P-201ENST00000516891 62 ntBASIC-1.46□□□□□ -2.64
USP54Q70EL1 MIR4790-201ENST00000577799 79 ntBASIC-1.46□□□□□ -2.64
USP54Q70EL1 MIR4770-201ENST00000579149 58 ntBASIC-1.46□□□□□ -2.64
USP54Q70EL1 UBE2V2P2-201ENST00000587677 504 ntBASIC-1.46□□□□□ -2.64
USP54Q70EL1 MIR6841-201ENST00000637129 72 ntBASIC-1.46□□□□□ -2.64
USP54Q70EL1 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.47□□□□□ -2.64
USP54Q70EL1 SNORA53-201ENST00000391141 249 ntBASIC-1.47□□□□□ -2.64
USP54Q70EL1 RNU4ATAC7P-201ENST00000516280 125 ntBASIC-1.47□□□□□ -2.64
USP54Q70EL1 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-1.47□□□□□ -2.64
USP54Q70EL1 MIR5591-201ENST00000578248 65 ntBASIC-1.47□□□□□ -2.64
USP54Q70EL1 Y_RNA.772-201ENST00000606692 102 ntBASIC-1.47□□□□□ -2.64
USP54Q70EL1 AC093783.1-201ENST00000612976 329 ntBASIC-1.47□□□□□ -2.64
USP54Q70EL1 AL359880.1-201ENST00000621879 266 ntBASIC-1.47□□□□□ -2.64
USP54Q70EL1 AC090617.10-201ENST00000624308 134 ntBASIC-1.47□□□□□ -2.64
USP54Q70EL1 MIR1321-201ENST00000637766 79 ntBASIC-1.47□□□□□ -2.64
USP54Q70EL1 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.48□□□□□ -2.65
USP54Q70EL1 RNU6-259P-201ENST00000383999 107 ntBASIC-1.48□□□□□ -2.65
USP54Q70EL1 SNORD64-201ENST00000386683 67 ntBASIC-1.48□□□□□ -2.65
USP54Q70EL1 RNU6ATAC19P-201ENST00000408096 110 ntBASIC-1.48□□□□□ -2.65
USP54Q70EL1 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.48□□□□□ -2.65
USP54Q70EL1 RPS29P25-201ENST00000481709 171 ntBASIC-1.48□□□□□ -2.65
USP54Q70EL1 AC019235.1-201ENST00000503847 207 ntBASIC-1.48□□□□□ -2.65
USP54Q70EL1 RNU6-1299P-201ENST00000516316 100 ntBASIC-1.48□□□□□ -2.65
USP54Q70EL1 AC007485.1-201ENST00000616755 206 ntBASIC-1.48□□□□□ -2.65
USP54Q70EL1 MTND3P10-201ENST00000450967 341 ntBASIC-1.48□□□□□ -2.65
USP54Q70EL1 RNU6-956P-201ENST00000458868 103 ntBASIC-1.48□□□□□ -2.65
USP54Q70EL1 SNORD67.1-201ENST00000516618 108 ntBASIC-1.48□□□□□ -2.65
USP54Q70EL1 AC024909.2-201ENST00000553035 286 ntBASIC-1.48□□□□□ -2.65
USP54Q70EL1 AC098479.1-201ENST00000609225 154 ntBASIC-1.48□□□□□ -2.65
USP54Q70EL1 MTND5P26-201ENST00000426018 1752 ntBASIC-1.49□□□□□ -2.65
USP54Q70EL1 RNU6-1260P-201ENST00000362944 107 ntBASIC-1.49□□□□□ -2.65
USP54Q70EL1 SNRPGP8-201ENST00000454064 226 ntBASIC-1.49□□□□□ -2.65
USP54Q70EL1 AC107027.2-201ENST00000512197 115 ntBASIC-1.49□□□□□ -2.65
USP54Q70EL1 RNU6-1016P-201ENST00000516689 94 ntBASIC-1.49□□□□□ -2.65
USP54Q70EL1 Y_RNA.695-201ENST00000516715 107 ntBASIC-1.49□□□□□ -2.65
USP54Q70EL1 Y_RNA.86-201ENST00000363020 111 ntBASIC-1.5□□□□□ -2.65
USP54Q70EL1 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.5□□□□□ -2.65
USP54Q70EL1 Y_RNA.482-201ENST00000384377 111 ntBASIC-1.5□□□□□ -2.65
USP54Q70EL1 RNU6-831P-201ENST00000384548 107 ntBASIC-1.5□□□□□ -2.65
USP54Q70EL1 RNU6-510P-201ENST00000391239 108 ntBASIC-1.5□□□□□ -2.65
USP54Q70EL1 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC-1.5□□□□□ -2.65
USP54Q70EL1 RNU7-113P-201ENST00000459273 62 ntBASIC-1.5□□□□□ -2.65
USP54Q70EL1 SNORD18.2-201ENST00000459604 70 ntBASIC-1.5□□□□□ -2.65
USP54Q70EL1 SEPT14P8-201ENST00000508026 178 ntBASIC-1.5□□□□□ -2.65
USP54Q70EL1 Y_RNA.809-201ENST00000516058 95 ntBASIC-1.5□□□□□ -2.65
USP54Q70EL1 SNORA40.17-201ENST00000517256 115 ntBASIC-1.5□□□□□ -2.65
USP54Q70EL1 AC026421.1-201ENST00000519101 163 ntBASIC-1.5□□□□□ -2.65
USP54Q70EL1 MIR548AE1-201ENST00000583292 70 ntBASIC-1.5□□□□□ -2.65
USP54Q70EL1 AL050303.3-201ENST00000613704 284 ntBASIC-1.5□□□□□ -2.65
USP54Q70EL1 SNORD115-20-201ENST00000365099 82 ntBASIC-1.51□□□□□ -2.65
USP54Q70EL1 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC-1.51□□□□□ -2.65
USP54Q70EL1 RNU7-195P-201ENST00000458793 62 ntBASIC-1.51□□□□□ -2.65
USP54Q70EL1 MTND5P5-201ENST00000503764 376 ntBASIC-1.51□□□□□ -2.65
USP54Q70EL1 Y_RNA.655-201ENST00000515919 96 ntBASIC-1.51□□□□□ -2.65
USP54Q70EL1 RNU6-287P-201ENST00000516230 98 ntBASIC-1.51□□□□□ -2.65
USP54Q70EL1 Y_RNA.711-201ENST00000516993 102 ntBASIC-1.51□□□□□ -2.65
USP54Q70EL1 RNU6-21P-201ENST00000384710 107 ntBASIC-1.51□□□□□ -2.65
USP54Q70EL1 RPS3AP52-201ENST00000435639 297 ntBASIC-1.51□□□□□ -2.65
USP54Q70EL1 AL121655.1-201ENST00000605811 308 ntBASIC-1.51□□□□□ -2.65
USP54Q70EL1 WT1-AS_8.1-201ENST00000615200 275 ntBASIC-1.51□□□□□ -2.65
USP54Q70EL1 MIR652-201ENST00000385278 98 ntBASIC-1.52□□□□□ -2.65
USP54Q70EL1 RNU6-763P-201ENST00000390865 106 ntBASIC-1.52□□□□□ -2.65
USP54Q70EL1 RNU6-1321P-201ENST00000390905 107 ntBASIC-1.52□□□□□ -2.65
USP54Q70EL1 MIR8485-201ENST00000401372 91 ntBASIC-1.52□□□□□ -2.65
USP54Q70EL1 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-1.52□□□□□ -2.65
USP54Q70EL1 RNA5SP153-201ENST00000516498 76 ntBASIC-1.52□□□□□ -2.65
USP54Q70EL1 AC015540.1-201ENST00000615828 501 ntBASIC-1.52□□□□□ -2.65
USP54Q70EL1 U2.1-201ENST00000618978 145 ntBASIC-1.52□□□□□ -2.65
USP54Q70EL1 RNU6-451P-201ENST00000362921 107 ntBASIC-1.53□□□□□ -2.65
USP54Q70EL1 Y_RNA.171-201ENST00000363760 102 ntBASIC-1.53□□□□□ -2.65
USP54Q70EL1 RNU5E-4P-201ENST00000364931 120 ntBASIC-1.53□□□□□ -2.65
USP54Q70EL1 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.53□□□□□ -2.65
USP54Q70EL1 MIR519A1-201ENST00000385257 85 ntBASIC-1.53□□□□□ -2.65
USP54Q70EL1 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-1.53□□□□□ -2.65
USP54Q70EL1 SNORD63B-201ENST00000411005 70 ntBASIC-1.53□□□□□ -2.65
USP54Q70EL1 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC-1.53□□□□□ -2.65
USP54Q70EL1 PMCHL1-202ENST00000423102 261 ntBASIC-1.53□□□□□ -2.65
USP54Q70EL1 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-1.53□□□□□ -2.65
USP54Q70EL1 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-1.53□□□□□ -2.65
USP54Q70EL1 RNU6-973P-201ENST00000364690 107 ntBASIC-1.54□□□□□ -2.66
USP54Q70EL1 RNU6-484P-201ENST00000384016 107 ntBASIC-1.54□□□□□ -2.66
USP54Q70EL1 Y_RNA.470-201ENST00000384307 117 ntBASIC-1.54□□□□□ -2.66
USP54Q70EL1 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC-1.54□□□□□ -2.66
USP54Q70EL1 RNU6-1314P-201ENST00000517139 104 ntBASIC-1.54□□□□□ -2.66
USP54Q70EL1 AC006504.6-201ENST00000590142 199 ntBASIC-1.54□□□□□ -2.66
USP54Q70EL1 SNORD113-5-201ENST00000607261 78 ntBASIC-1.54□□□□□ -2.66
USP54Q70EL1 RNU6-431P-201ENST00000383874 107 ntBASIC-1.55□□□□□ -2.66
USP54Q70EL1 Y_RNA.785-201ENST00000384290 109 ntBASIC-1.55□□□□□ -2.66
USP54Q70EL1 RNU6-370P-201ENST00000411008 104 ntBASIC-1.55□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 225 ms