Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 Y_RNA.634-201ENST00000364811 113 ntBASIC-1.41□□□□□ -2.64
USF3Q68DE3 Y_RNA.299-201ENST00000364973 94 ntBASIC-1.41□□□□□ -2.64
USF3Q68DE3 Y_RNA.383-201ENST00000383855 97 ntBASIC-1.41□□□□□ -2.64
USF3Q68DE3 RNU6-484P-201ENST00000384016 107 ntBASIC-1.41□□□□□ -2.64
USF3Q68DE3 MIR2113-201ENST00000459007 91 ntBASIC-1.41□□□□□ -2.64
USF3Q68DE3 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-1.41□□□□□ -2.64
USF3Q68DE3 AC024909.2-201ENST00000553035 286 ntBASIC-1.41□□□□□ -2.64
USF3Q68DE3 MIR4756-201ENST00000577874 78 ntBASIC-1.41□□□□□ -2.64
USF3Q68DE3 Y_RNA.461-201ENST00000384263 103 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 RNU2-55P-201ENST00000411146 174 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 RNU6-261P-201ENST00000459506 102 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 MIR6874-201ENST00000635894 71 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 Y_RNA.72-201ENST00000362894 103 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 MIR582-201ENST00000365731 98 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 RNU6-144P-201ENST00000383951 107 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 RNU6-466P-201ENST00000391224 103 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 Y_RNA.596-201ENST00000410462 109 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 RNU2-72P-201ENST00000411175 163 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 RPS29P25-201ENST00000481709 171 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 MIR548AB-201ENST00000584917 84 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 AC006504.6-201ENST00000590142 199 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 AL021368.1-201ENST00000607490 540 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 AC021613.1-201ENST00000623880 111 ntBASIC-1.42□□□□□ -2.64
USF3Q68DE3 RNU6-899P-201ENST00000363947 107 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 MIR487B-201ENST00000385021 84 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC-1.43□□□□□ -2.64
USF3Q68DE3 RNU6-1156P-201ENST00000410365 100 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 Y_RNA.601-201ENST00000410500 113 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 RNU2-66P-201ENST00000410650 161 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 MTND4P28-201ENST00000426217 387 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 AL353691.2-201ENST00000443795 59 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 RNU6-408P-201ENST00000515910 100 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 SNORD77.4-201ENST00000516158 81 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 RNU6-720P-201ENST00000516363 108 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 AL022161.1-201ENST00000604390 213 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 RNU5E-4P-201ENST00000364931 120 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 Y_RNA.432-201ENST00000384087 111 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 MIR206-201ENST00000384872 86 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 RNU6-1000P-201ENST00000391066 106 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 SNORD63B-201ENST00000411005 70 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 MIR5197-201ENST00000583721 112 ntBASIC-1.43□□□□□ -2.64
USF3Q68DE3 SNORA22.1-201ENST00000362701 134 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 RNU6-626P-201ENST00000363354 107 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 RNU6-20P-201ENST00000384106 107 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 MIR3139-201ENST00000579145 76 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 MIR4724-201ENST00000579485 89 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 AC133104.2-201ENST00000615272 193 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 RNU6-208P-201ENST00000362431 107 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 RNA5SP405-201ENST00000363059 114 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 RNU6-879P-201ENST00000364328 108 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 RNU6-54P-201ENST00000365563 107 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 RNU6-746P-201ENST00000384112 109 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 SNORD78.2-201ENST00000391076 69 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 RNU7-48P-201ENST00000458875 63 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 RNU6-911P-201ENST00000516523 104 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 RNU6-980P-201ENST00000516925 103 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC-1.44□□□□□ -2.64
USF3Q68DE3 Y_RNA.54-201ENST00000362766 105 ntBASIC-1.45□□□□□ -2.64
USF3Q68DE3 RNU6-170P-201ENST00000362832 104 ntBASIC-1.45□□□□□ -2.64
USF3Q68DE3 Y_RNA.570-201ENST00000384750 101 ntBASIC-1.45□□□□□ -2.64
USF3Q68DE3 AC024067.1-201ENST00000426199 223 ntBASIC-1.45□□□□□ -2.64
USF3Q68DE3 Y_RNA.809-201ENST00000516058 95 ntBASIC-1.45□□□□□ -2.64
USF3Q68DE3 RN7SKP295-201ENST00000517264 153 ntBASIC-1.45□□□□□ -2.64
USF3Q68DE3 ZNF519P2-201ENST00000557032 169 ntBASIC-1.45□□□□□ -2.64
USF3Q68DE3 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC-1.45□□□□□ -2.64
USF3Q68DE3 AL158211.2-201ENST00000607282 395 ntBASIC-1.45□□□□□ -2.64
USF3Q68DE3 AC097520.1-201ENST00000624435 385 ntBASIC-1.45□□□□□ -2.64
USF3Q68DE3 U6.100-201ENST00000636230 99 ntBASIC-1.45□□□□□ -2.64
USF3Q68DE3 AC099654.14-201ENST00000638599 341 ntBASIC-1.45□□□□□ -2.64
USF3Q68DE3 Y_RNA.105-201ENST00000363182 111 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 Y_RNA.207-201ENST00000364142 106 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 RNU4-50P-201ENST00000364361 141 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 RNU6-312P-201ENST00000364629 107 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 MIR516A2-201ENST00000384888 90 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 MIR516A1-201ENST00000385033 90 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 SNORA69.1-201ENST00000390904 137 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 MTND1P2-201ENST00000430604 821 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC-1.46□□□□□ -2.64
USF3Q68DE3 MIR4509-3-201ENST00000578671 94 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 MIR4509-2-201ENST00000583920 94 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 AL365205.2-201ENST00000594586 68 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 AC005014.3-201ENST00000605985 190 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 AL157392.4-201ENST00000609756 345 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 MIR4509-1-201ENST00000618224 94 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 Y_RNA.77-201ENST00000362962 107 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 SNORA62.4-201ENST00000365504 151 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 RNU6-648P-201ENST00000410190 107 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC-1.46□□□□□ -2.64
USF3Q68DE3 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 AC013791.1-201ENST00000616619 62 ntBASIC-1.46□□□□□ -2.64
USF3Q68DE3 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC-1.47□□□□□ -2.64
USF3Q68DE3 RNU6-397P-201ENST00000516226 104 ntBASIC-1.47□□□□□ -2.64
USF3Q68DE3 MIR3145-201ENST00000580727 82 ntBASIC-1.47□□□□□ -2.64
USF3Q68DE3 SNORD115-33-201ENST00000363723 82 ntBASIC-1.47□□□□□ -2.65
USF3Q68DE3 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.47□□□□□ -2.65
USF3Q68DE3 Y_RNA.372-201ENST00000365599 102 ntBASIC-1.47□□□□□ -2.65
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms