Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.4□□□□□ -2.19
VPS53Q5VIR6 RNA5SP33-201ENST00000516687 98 ntBASIC1.4□□□□□ -2.19
VPS53Q5VIR6 MIR4679-2-201ENST00000578358 77 ntBASIC1.4□□□□□ -2.19
VPS53Q5VIR6 MIR4781-201ENST00000585250 76 ntBASIC1.4□□□□□ -2.19
VPS53Q5VIR6 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.4□□□□□ -2.19
VPS53Q5VIR6 MIR6516-201ENST00000630554 81 ntBASIC1.4□□□□□ -2.19
VPS53Q5VIR6 MIR377-201ENST00000362145 69 ntBASIC1.39□□□□□ -2.19
VPS53Q5VIR6 RNU6-215P-201ENST00000365169 102 ntBASIC1.39□□□□□ -2.19
VPS53Q5VIR6 SNORD116-21-201ENST00000384507 92 ntBASIC1.39□□□□□ -2.19
VPS53Q5VIR6 RNU6-880P-201ENST00000384526 107 ntBASIC1.39□□□□□ -2.19
VPS53Q5VIR6 RNU6-939P-201ENST00000384634 107 ntBASIC1.39□□□□□ -2.19
VPS53Q5VIR6 RNU6-613P-201ENST00000410412 108 ntBASIC1.39□□□□□ -2.19
VPS53Q5VIR6 AC244023.1-201ENST00000426884 112 ntBASIC1.39□□□□□ -2.19
VPS53Q5VIR6 AC048334.1-201ENST00000477975 159 ntBASIC1.39□□□□□ -2.19
VPS53Q5VIR6 AP000753.3-201ENST00000604083 169 ntBASIC1.39□□□□□ -2.19
VPS53Q5VIR6 AC242498.1-201ENST00000604134 111 ntBASIC1.39□□□□□ -2.19
VPS53Q5VIR6 SNORA25-201ENST00000384384 134 ntBASIC1.38□□□□□ -2.19
VPS53Q5VIR6 RNU6-429P-201ENST00000384582 108 ntBASIC1.38□□□□□ -2.19
VPS53Q5VIR6 AL591704.2-201ENST00000421658 181 ntBASIC1.38□□□□□ -2.19
VPS53Q5VIR6 SNORA31.2-201ENST00000516019 134 ntBASIC1.38□□□□□ -2.19
VPS53Q5VIR6 RNU7-40P-201ENST00000516397 64 ntBASIC1.38□□□□□ -2.19
VPS53Q5VIR6 AC007012.1-201ENST00000567192 175 ntBASIC1.38□□□□□ -2.19
VPS53Q5VIR6 MIR548AE2-201ENST00000583456 67 ntBASIC1.38□□□□□ -2.19
VPS53Q5VIR6 Y_RNA.4-201ENST00000362333 112 ntBASIC1.37□□□□□ -2.19
VPS53Q5VIR6 RNU6-1325P-201ENST00000364905 105 ntBASIC1.37□□□□□ -2.19
VPS53Q5VIR6 RNU6-392P-201ENST00000364926 101 ntBASIC1.37□□□□□ -2.19
VPS53Q5VIR6 MIR548D2-201ENST00000384955 97 ntBASIC1.37□□□□□ -2.19
VPS53Q5VIR6 MIR548A1-201ENST00000385041 97 ntBASIC1.37□□□□□ -2.19
VPS53Q5VIR6 SNORD12C-201ENST00000386307 89 ntBASIC1.37□□□□□ -2.19
VPS53Q5VIR6 snoU13.2-201ENST00000459201 104 ntBASIC1.37□□□□□ -2.19
VPS53Q5VIR6 SNORA70.22-201ENST00000517160 124 ntBASIC1.37□□□□□ -2.19
VPS53Q5VIR6 MIR6129-201ENST00000616087 109 ntBASIC1.37□□□□□ -2.19
VPS53Q5VIR6 SEPT14P17-201ENST00000617978 177 ntBASIC1.37□□□□□ -2.19
VPS53Q5VIR6 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.37□□□□□ -2.19
VPS53Q5VIR6 SNORD115-19-201ENST00000363098 82 ntBASIC1.36□□□□□ -2.19
VPS53Q5VIR6 SNORD115-18-201ENST00000363293 82 ntBASIC1.36□□□□□ -2.19
VPS53Q5VIR6 SNORD115-17-201ENST00000364612 82 ntBASIC1.36□□□□□ -2.19
VPS53Q5VIR6 SNORD20-201ENST00000384550 80 ntBASIC1.36□□□□□ -2.19
VPS53Q5VIR6 MIR222-201ENST00000384992 110 ntBASIC1.36□□□□□ -2.19
VPS53Q5VIR6 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
VPS53Q5VIR6 SNORD77B-201ENST00000391112 67 ntBASIC1.36□□□□□ -2.19
VPS53Q5VIR6 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
VPS53Q5VIR6 RNU6-1086P-201ENST00000410930 100 ntBASIC1.36□□□□□ -2.19
VPS53Q5VIR6 RNU6-589P-201ENST00000516485 107 ntBASIC1.36□□□□□ -2.19
VPS53Q5VIR6 RNU7-6P-201ENST00000516845 62 ntBASIC1.36□□□□□ -2.19
VPS53Q5VIR6 RNU7-35P-201ENST00000517174 62 ntBASIC1.36□□□□□ -2.19
VPS53Q5VIR6 AC087741.2-201ENST00000619415 172 ntBASIC1.36□□□□□ -2.19
VPS53Q5VIR6 Y_RNA.35-201ENST00000362601 101 ntBASIC1.35□□□□□ -2.19
VPS53Q5VIR6 RNY1P10-201ENST00000363268 113 ntBASIC1.35□□□□□ -2.19
VPS53Q5VIR6 Y_RNA.281-201ENST00000364774 94 ntBASIC1.35□□□□□ -2.19
VPS53Q5VIR6 RNU6-580P-201ENST00000365159 107 ntBASIC1.35□□□□□ -2.19
VPS53Q5VIR6 SNORA18-201ENST00000384416 132 ntBASIC1.35□□□□□ -2.19
VPS53Q5VIR6 RNU6-342P-201ENST00000384521 104 ntBASIC1.35□□□□□ -2.19
VPS53Q5VIR6 MIR563-201ENST00000385080 79 ntBASIC1.35□□□□□ -2.19
VPS53Q5VIR6 RNU6-412P-201ENST00000516434 106 ntBASIC1.35□□□□□ -2.19
VPS53Q5VIR6 RNU6-919P-201ENST00000516731 104 ntBASIC1.35□□□□□ -2.19
VPS53Q5VIR6 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
VPS53Q5VIR6 Y_RNA.362-201ENST00000365518 110 ntBASIC1.34□□□□□ -2.19
VPS53Q5VIR6 Y_RNA.363-201ENST00000365529 113 ntBASIC1.34□□□□□ -2.19
VPS53Q5VIR6 MIR588-201ENST00000384900 83 ntBASIC1.34□□□□□ -2.19
VPS53Q5VIR6 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.34□□□□□ -2.19
VPS53Q5VIR6 Y_RNA.709-201ENST00000516952 92 ntBASIC1.34□□□□□ -2.19
VPS53Q5VIR6 AC027335.2-201ENST00000624030 375 ntBASIC1.34□□□□□ -2.19
VPS53Q5VIR6 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
VPS53Q5VIR6 Y_RNA.168-201ENST00000363740 102 ntBASIC1.33□□□□□ -2.2
VPS53Q5VIR6 RNU6-654P-201ENST00000364373 107 ntBASIC1.33□□□□□ -2.2
VPS53Q5VIR6 SNORA80D-201ENST00000384488 135 ntBASIC1.33□□□□□ -2.2
VPS53Q5VIR6 MIR1285-1-201ENST00000408593 84 ntBASIC1.33□□□□□ -2.2
VPS53Q5VIR6 AC063976.4-201ENST00000421971 163 ntBASIC1.33□□□□□ -2.2
VPS53Q5VIR6 MIR1270-201ENST00000459320 83 ntBASIC1.33□□□□□ -2.2
VPS53Q5VIR6 RPL39P34-201ENST00000477141 156 ntBASIC1.33□□□□□ -2.2
VPS53Q5VIR6 AL662814.1-201ENST00000617364 121 ntBASIC1.33□□□□□ -2.2
VPS53Q5VIR6 Y_RNA.344-201ENST00000365381 112 ntBASIC1.32□□□□□ -2.2
VPS53Q5VIR6 SNORA32-201ENST00000384072 121 ntBASIC1.32□□□□□ -2.2
VPS53Q5VIR6 RNU6-910P-201ENST00000390844 107 ntBASIC1.32□□□□□ -2.2
VPS53Q5VIR6 SNORA75.2-201ENST00000391138 150 ntBASIC1.32□□□□□ -2.2
VPS53Q5VIR6 SNORA75.3-201ENST00000391231 150 ntBASIC1.32□□□□□ -2.2
VPS53Q5VIR6 RNA5SP237-201ENST00000410414 113 ntBASIC1.32□□□□□ -2.2
VPS53Q5VIR6 SNORD79.1-201ENST00000516069 84 ntBASIC1.32□□□□□ -2.2
VPS53Q5VIR6 RNA5SP404-201ENST00000517118 132 ntBASIC1.32□□□□□ -2.2
VPS53Q5VIR6 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.32□□□□□ -2.2
VPS53Q5VIR6 MIR6740-201ENST00000618268 113 ntBASIC1.32□□□□□ -2.2
VPS53Q5VIR6 AL035470.1-201ENST00000622571 220 ntBASIC1.32□□□□□ -2.2
VPS53Q5VIR6 AL589743.1-201ENST00000551932 2712 ntBASIC1.31□□□□□ -2.2
VPS53Q5VIR6 Y_RNA.85-201ENST00000363014 111 ntBASIC1.31□□□□□ -2.2
VPS53Q5VIR6 Y_RNA.549-201ENST00000384657 102 ntBASIC1.31□□□□□ -2.2
VPS53Q5VIR6 RNU6-205P-201ENST00000390858 107 ntBASIC1.31□□□□□ -2.2
VPS53Q5VIR6 SNORD12-201ENST00000391002 90 ntBASIC1.31□□□□□ -2.2
VPS53Q5VIR6 RNU6-1165P-201ENST00000410119 107 ntBASIC1.31□□□□□ -2.2
VPS53Q5VIR6 RNU7-62P-201ENST00000458856 62 ntBASIC1.31□□□□□ -2.2
VPS53Q5VIR6 RNU7-21P-201ENST00000459430 62 ntBASIC1.31□□□□□ -2.2
VPS53Q5VIR6 RNU7-79P-201ENST00000516082 62 ntBASIC1.31□□□□□ -2.2
VPS53Q5VIR6 Y_RNA.676-201ENST00000516393 96 ntBASIC1.31□□□□□ -2.2
VPS53Q5VIR6 AC141846.1-201ENST00000568348 142 ntBASIC1.31□□□□□ -2.2
VPS53Q5VIR6 Y_RNA.49-201ENST00000362714 112 ntBASIC1.3□□□□□ -2.2
VPS53Q5VIR6 RNY4P18-201ENST00000391107 89 ntBASIC1.3□□□□□ -2.2
VPS53Q5VIR6 AL035461.1-201ENST00000421490 332 ntBASIC1.3□□□□□ -2.2
VPS53Q5VIR6 RPS29P28-201ENST00000446439 141 ntBASIC1.3□□□□□ -2.2
VPS53Q5VIR6 MIR4295-201ENST00000585286 85 ntBASIC1.3□□□□□ -2.2
VPS53Q5VIR6 FAM71BP1-201ENST00000604431 523 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms