Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC010332.2-201ENST00000613083 1904 ntBASIC0.85□□□□□ -2.27
CTCFP49711 RNA5SP63-201ENST00000391225 112 ntBASIC0.85□□□□□ -2.27
CTCFP49711 SNORD99-201ENST00000408612 74 ntBASIC0.85□□□□□ -2.27
CTCFP49711 RNU6-1165P-201ENST00000410119 107 ntBASIC0.85□□□□□ -2.27
CTCFP49711 RNU6-351P-201ENST00000516097 100 ntBASIC0.85□□□□□ -2.27
CTCFP49711 RNU7-70P-201ENST00000516941 66 ntBASIC0.85□□□□□ -2.27
CTCFP49711 AP002392.1-201ENST00000537692 208 ntBASIC0.85□□□□□ -2.27
CTCFP49711 MIR4771-2-201ENST00000577758 74 ntBASIC0.85□□□□□ -2.27
CTCFP49711 MIR4771-1-201ENST00000582617 74 ntBASIC0.85□□□□□ -2.27
CTCFP49711 MIR6841-201ENST00000637129 72 ntBASIC0.85□□□□□ -2.27
CTCFP49711 MIR6759-201ENST00000638110 65 ntBASIC0.85□□□□□ -2.27
CTCFP49711 Y_RNA.52-201ENST00000362760 96 ntBASIC0.84□□□□□ -2.27
CTCFP49711 RNU6-1082P-201ENST00000364574 107 ntBASIC0.84□□□□□ -2.27
CTCFP49711 SNORD105-201ENST00000386910 85 ntBASIC0.84□□□□□ -2.27
CTCFP49711 AC020891.4-201ENST00000605745 93 ntBASIC0.84□□□□□ -2.27
CTCFP49711 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.84□□□□□ -2.27
CTCFP49711 AC021613.1-201ENST00000623880 111 ntBASIC0.84□□□□□ -2.27
CTCFP49711 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
CTCFP49711 MIR30D-201ENST00000362283 70 ntBASIC0.83□□□□□ -2.28
CTCFP49711 Y_RNA.240-201ENST00000364469 95 ntBASIC0.83□□□□□ -2.28
CTCFP49711 Y_RNA.257-201ENST00000364596 102 ntBASIC0.83□□□□□ -2.28
CTCFP49711 Y_RNA.337-201ENST00000365312 102 ntBASIC0.83□□□□□ -2.28
CTCFP49711 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.83□□□□□ -2.28
CTCFP49711 RNU5E-9P-201ENST00000411164 104 ntBASIC0.83□□□□□ -2.28
CTCFP49711 AC092628.1-201ENST00000436250 252 ntBASIC0.83□□□□□ -2.28
CTCFP49711 MIR18B-201ENST00000454574 71 ntBASIC0.83□□□□□ -2.28
CTCFP49711 RNU7-120P-201ENST00000459334 63 ntBASIC0.83□□□□□ -2.28
CTCFP49711 AC023934.1-201ENST00000574529 2389 ntBASIC0.83□□□□□ -2.28
CTCFP49711 RNU4-84P-201ENST00000364200 139 ntBASIC0.82□□□□□ -2.28
CTCFP49711 Y_RNA.700-201ENST00000516806 100 ntBASIC0.82□□□□□ -2.28
CTCFP49711 MIR3152-201ENST00000579801 74 ntBASIC0.82□□□□□ -2.28
CTCFP49711 MIR4676-201ENST00000583078 72 ntBASIC0.82□□□□□ -2.28
CTCFP49711 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.81□□□□□ -2.28
CTCFP49711 RNU6-682P-201ENST00000363843 106 ntBASIC0.81□□□□□ -2.28
CTCFP49711 RNA5SP331-201ENST00000364986 107 ntBASIC0.81□□□□□ -2.28
CTCFP49711 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
CTCFP49711 MIR329-2-201ENST00000385029 84 ntBASIC0.81□□□□□ -2.28
CTCFP49711 RNU6-239P-201ENST00000390990 99 ntBASIC0.81□□□□□ -2.28
CTCFP49711 RNA5SP236-201ENST00000516169 116 ntBASIC0.81□□□□□ -2.28
CTCFP49711 RNU6-977P-201ENST00000516411 103 ntBASIC0.81□□□□□ -2.28
CTCFP49711 RNU7-121P-201ENST00000516604 62 ntBASIC0.81□□□□□ -2.28
CTCFP49711 MIR4804-201ENST00000581683 73 ntBASIC0.81□□□□□ -2.28
CTCFP49711 Y_RNA.29-201ENST00000362570 113 ntBASIC0.8□□□□□ -2.28
CTCFP49711 SNORA22.1-201ENST00000362701 134 ntBASIC0.8□□□□□ -2.28
CTCFP49711 RNU4-16P-201ENST00000364737 141 ntBASIC0.8□□□□□ -2.28
CTCFP49711 SNORA20-201ENST00000384662 132 ntBASIC0.8□□□□□ -2.28
CTCFP49711 SNORA75.5-201ENST00000391291 81 ntBASIC0.8□□□□□ -2.28
CTCFP49711 MIR1912-201ENST00000410389 80 ntBASIC0.8□□□□□ -2.28
CTCFP49711 AC244098.3-201ENST00000424803 96 ntBASIC0.8□□□□□ -2.28
CTCFP49711 RNU6-861P-201ENST00000516745 106 ntBASIC0.8□□□□□ -2.28
CTCFP49711 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.8□□□□□ -2.28
CTCFP49711 AC104465.1-201ENST00000611365 139 ntBASIC0.8□□□□□ -2.28
CTCFP49711 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
CTCFP49711 Y_RNA.357-201ENST00000365487 109 ntBASIC0.79□□□□□ -2.28
CTCFP49711 Y_RNA.785-201ENST00000384290 109 ntBASIC0.79□□□□□ -2.28
CTCFP49711 MIR520F-201ENST00000384824 87 ntBASIC0.79□□□□□ -2.28
CTCFP49711 MT-TF-201ENST00000387314 71 ntBASIC0.79□□□□□ -2.28
CTCFP49711 SNORA81.3-201ENST00000517283 198 ntBASIC0.79□□□□□ -2.28
CTCFP49711 RNU6-818P-201ENST00000364837 108 ntBASIC0.78□□□□□ -2.28
CTCFP49711 RNY4P3-201ENST00000365254 95 ntBASIC0.78□□□□□ -2.28
CTCFP49711 Y_RNA.441-201ENST00000384123 112 ntBASIC0.78□□□□□ -2.28
CTCFP49711 RNY1P6-201ENST00000384193 109 ntBASIC0.78□□□□□ -2.28
CTCFP49711 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.78□□□□□ -2.28
CTCFP49711 RNU7-185P-201ENST00000459215 60 ntBASIC0.78□□□□□ -2.28
CTCFP49711 RNU6-229P-201ENST00000516614 102 ntBASIC0.78□□□□□ -2.28
CTCFP49711 MIR3646-201ENST00000578301 84 ntBASIC0.78□□□□□ -2.28
CTCFP49711 MIR4514-201ENST00000581410 57 ntBASIC0.78□□□□□ -2.28
CTCFP49711 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.78□□□□□ -2.28
CTCFP49711 AL662814.1-201ENST00000617364 121 ntBASIC0.78□□□□□ -2.28
CTCFP49711 MIR3658-201ENST00000636291 56 ntBASIC0.78□□□□□ -2.28
CTCFP49711 RNU6-349P-201ENST00000362402 107 ntBASIC0.77□□□□□ -2.29
CTCFP49711 Y_RNA.170-201ENST00000363746 110 ntBASIC0.77□□□□□ -2.29
CTCFP49711 Y_RNA.497-201ENST00000384447 98 ntBASIC0.77□□□□□ -2.29
CTCFP49711 MIR520H-201ENST00000385126 88 ntBASIC0.77□□□□□ -2.29
CTCFP49711 RNU1-119P-201ENST00000391122 165 ntBASIC0.77□□□□□ -2.29
CTCFP49711 RNU7-56P-201ENST00000458744 62 ntBASIC0.77□□□□□ -2.29
CTCFP49711 AC011195.1-201ENST00000578177 177 ntBASIC0.77□□□□□ -2.29
CTCFP49711 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.77□□□□□ -2.29
CTCFP49711 AC004792.1-201ENST00000614523 137 ntBASIC0.77□□□□□ -2.29
CTCFP49711 MIR6844-201ENST00000637122 62 ntBASIC0.77□□□□□ -2.29
CTCFP49711 MIR573-201ENST00000384964 99 ntBASIC0.76□□□□□ -2.29
CTCFP49711 MIR125B2-201ENST00000385128 89 ntBASIC0.76□□□□□ -2.29
CTCFP49711 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.76□□□□□ -2.29
CTCFP49711 RNU6-588P-201ENST00000410281 105 ntBASIC0.76□□□□□ -2.29
CTCFP49711 COX6CP6-201ENST00000490840 228 ntBASIC0.76□□□□□ -2.29
CTCFP49711 RNU6-1258P-201ENST00000516911 111 ntBASIC0.76□□□□□ -2.29
CTCFP49711 RNU2-60P-201ENST00000517290 128 ntBASIC0.76□□□□□ -2.29
CTCFP49711 MIR5589-201ENST00000579442 60 ntBASIC0.76□□□□□ -2.29
CTCFP49711 AC243829.6-201ENST00000612652 106 ntBASIC0.76□□□□□ -2.29
CTCFP49711 RNY1P11-201ENST00000363759 113 ntBASIC0.75□□□□□ -2.29
CTCFP49711 RNU6-1237P-201ENST00000384777 107 ntBASIC0.75□□□□□ -2.29
CTCFP49711 MIR938-201ENST00000401216 83 ntBASIC0.75□□□□□ -2.29
CTCFP49711 MIR1257-201ENST00000408490 117 ntBASIC0.75□□□□□ -2.29
CTCFP49711 RNA5SP237-201ENST00000410414 113 ntBASIC0.75□□□□□ -2.29
CTCFP49711 Y_RNA.662-201ENST00000516028 97 ntBASIC0.75□□□□□ -2.29
CTCFP49711 Y_RNA.757-201ENST00000578934 114 ntBASIC0.75□□□□□ -2.29
CTCFP49711 DNAJC19P2-201ENST00000593340 302 ntBASIC0.75□□□□□ -2.29
CTCFP49711 AC067863.3-201ENST00000624172 122 ntBASIC0.75□□□□□ -2.29
CTCFP49711 RNU6-1318P-201ENST00000365389 103 ntBASIC0.74□□□□□ -2.29
CTCFP49711 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms