Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 MIR6788-201ENST00000618842 66 ntBASIC0.69□□□□□ -2.3
MSH2P43246 Y_RNA.251-201ENST00000364551 99 ntBASIC0.68□□□□□ -2.3
MSH2P43246 RNU6-690P-201ENST00000365242 106 ntBASIC0.68□□□□□ -2.3
MSH2P43246 RNU6-342P-201ENST00000384521 104 ntBASIC0.68□□□□□ -2.3
MSH2P43246 RNU6-447P-201ENST00000410293 104 ntBASIC0.68□□□□□ -2.3
MSH2P43246 RNU6-1118P-201ENST00000410382 104 ntBASIC0.68□□□□□ -2.3
MSH2P43246 RNU6-1076P-201ENST00000410397 104 ntBASIC0.68□□□□□ -2.3
MSH2P43246 RNU6-355P-201ENST00000410427 104 ntBASIC0.68□□□□□ -2.3
MSH2P43246 RNU6-791P-201ENST00000410467 104 ntBASIC0.68□□□□□ -2.3
MSH2P43246 RNU6-705P-201ENST00000410601 104 ntBASIC0.68□□□□□ -2.3
MSH2P43246 RNU6-1100P-201ENST00000410691 104 ntBASIC0.68□□□□□ -2.3
MSH2P43246 RNU6-860P-201ENST00000410860 104 ntBASIC0.68□□□□□ -2.3
MSH2P43246 RNU6-1217P-201ENST00000411276 104 ntBASIC0.68□□□□□ -2.3
MSH2P43246 RNU6-785P-201ENST00000411324 104 ntBASIC0.68□□□□□ -2.3
MSH2P43246 AL022718.1-201ENST00000412004 84 ntBASIC0.68□□□□□ -2.3
MSH2P43246 SNORD92-201ENST00000585078 85 ntBASIC0.68□□□□□ -2.3
MSH2P43246 AC090425.1-201ENST00000610007 140 ntBASIC0.68□□□□□ -2.3
MSH2P43246 U6.90-201ENST00000614007 104 ntBASIC0.68□□□□□ -2.3
MSH2P43246 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.68□□□□□ -2.3
MSH2P43246 U6.70-201ENST00000620287 104 ntBASIC0.68□□□□□ -2.3
MSH2P43246 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.68□□□□□ -2.3
MSH2P43246 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.67□□□□□ -2.3
MSH2P43246 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.67□□□□□ -2.3
MSH2P43246 SNORD18B-201ENST00000365659 72 ntBASIC0.67□□□□□ -2.3
MSH2P43246 SNORD93-201ENST00000408813 74 ntBASIC0.67□□□□□ -2.3
MSH2P43246 RNA5SP222-201ENST00000411039 105 ntBASIC0.67□□□□□ -2.3
MSH2P43246 RPL39P25-201ENST00000449384 154 ntBASIC0.67□□□□□ -2.3
MSH2P43246 RNU7-102P-201ENST00000458948 62 ntBASIC0.67□□□□□ -2.3
MSH2P43246 AC112693.2-201ENST00000556538 232 ntBASIC0.67□□□□□ -2.3
MSH2P43246 AC133485.1-201ENST00000567176 124 ntBASIC0.67□□□□□ -2.3
MSH2P43246 AC138907.6-201ENST00000568401 126 ntBASIC0.67□□□□□ -2.3
MSH2P43246 AC008608.1-201ENST00000603910 127 ntBASIC0.67□□□□□ -2.3
MSH2P43246 AL590095.2-201ENST00000604136 117 ntBASIC0.67□□□□□ -2.3
MSH2P43246 Y_RNA.116-201ENST00000363292 103 ntBASIC0.66□□□□□ -2.3
MSH2P43246 Y_RNA.120-201ENST00000363304 110 ntBASIC0.66□□□□□ -2.3
MSH2P43246 RNU4-11P-201ENST00000365287 132 ntBASIC0.66□□□□□ -2.3
MSH2P43246 RNU6-949P-201ENST00000384040 107 ntBASIC0.66□□□□□ -2.3
MSH2P43246 MIR518E-201ENST00000385252 88 ntBASIC0.66□□□□□ -2.3
MSH2P43246 U8.15-201ENST00000390947 134 ntBASIC0.66□□□□□ -2.3
MSH2P43246 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.66□□□□□ -2.3
MSH2P43246 RNU6-1086P-201ENST00000410930 100 ntBASIC0.66□□□□□ -2.3
MSH2P43246 RNU7-113P-201ENST00000459273 62 ntBASIC0.66□□□□□ -2.3
MSH2P43246 RNU6-240P-201ENST00000516098 97 ntBASIC0.66□□□□□ -2.3
MSH2P43246 AC090897.1-201ENST00000580909 226 ntBASIC0.66□□□□□ -2.3
MSH2P43246 MIR4305-201ENST00000583252 102 ntBASIC0.66□□□□□ -2.3
MSH2P43246 MIR6734-201ENST00000621166 68 ntBASIC0.66□□□□□ -2.3
MSH2P43246 SNORD115-2-201ENST00000362842 82 ntBASIC0.65□□□□□ -2.31
MSH2P43246 SNORD115-20-201ENST00000365099 82 ntBASIC0.65□□□□□ -2.31
MSH2P43246 Y_RNA.470-201ENST00000384307 117 ntBASIC0.65□□□□□ -2.31
MSH2P43246 MIR508-201ENST00000384857 115 ntBASIC0.65□□□□□ -2.31
MSH2P43246 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.65□□□□□ -2.31
MSH2P43246 Y_RNA.580-201ENST00000391004 95 ntBASIC0.65□□□□□ -2.31
MSH2P43246 RNU6-394P-201ENST00000410735 107 ntBASIC0.65□□□□□ -2.31
MSH2P43246 RNU4-54P-201ENST00000516428 129 ntBASIC0.65□□□□□ -2.31
MSH2P43246 RNA5SP121-201ENST00000516537 101 ntBASIC0.65□□□□□ -2.31
MSH2P43246 RNU6-1223P-201ENST00000517124 104 ntBASIC0.65□□□□□ -2.31
MSH2P43246 RNU6-794P-201ENST00000517261 64 ntBASIC0.65□□□□□ -2.31
MSH2P43246 MIR3612-201ENST00000579753 87 ntBASIC0.65□□□□□ -2.31
MSH2P43246 FTX_2.1-201ENST00000618816 94 ntBASIC0.65□□□□□ -2.31
MSH2P43246 RNY1P13-201ENST00000365030 105 ntBASIC0.64□□□□□ -2.31
MSH2P43246 RNU6-449P-201ENST00000383914 107 ntBASIC0.64□□□□□ -2.31
MSH2P43246 SNORA36.2-201ENST00000384004 127 ntBASIC0.64□□□□□ -2.31
MSH2P43246 AL603914.1-201ENST00000401964 204 ntBASIC0.64□□□□□ -2.31
MSH2P43246 RNU4-83P-201ENST00000410863 133 ntBASIC0.64□□□□□ -2.31
MSH2P43246 AL512326.2-201ENST00000426359 151 ntBASIC0.64□□□□□ -2.31
MSH2P43246 Y_RNA.651-201ENST00000459380 103 ntBASIC0.64□□□□□ -2.31
MSH2P43246 Y_RNA.686-201ENST00000516548 134 ntBASIC0.64□□□□□ -2.31
MSH2P43246 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.64□□□□□ -2.31
MSH2P43246 AC133485.4-201ENST00000561835 220 ntBASIC0.64□□□□□ -2.31
MSH2P43246 AC138907.4-201ENST00000570107 226 ntBASIC0.64□□□□□ -2.31
MSH2P43246 Y_RNA.778-201ENST00000620203 90 ntBASIC0.64□□□□□ -2.31
MSH2P43246 RNU6-508P-201ENST00000363231 103 ntBASIC0.63□□□□□ -2.31
MSH2P43246 RNU6-151P-201ENST00000364158 107 ntBASIC0.63□□□□□ -2.31
MSH2P43246 RNU6-309P-201ENST00000364573 106 ntBASIC0.63□□□□□ -2.31
MSH2P43246 RNU6-1130P-201ENST00000365434 107 ntBASIC0.63□□□□□ -2.31
MSH2P43246 RNU6-42P-201ENST00000384165 107 ntBASIC0.63□□□□□ -2.31
MSH2P43246 SNORD100-201ENST00000408573 76 ntBASIC0.63□□□□□ -2.31
MSH2P43246 AC096949.1-201ENST00000412047 152 ntBASIC0.63□□□□□ -2.31
MSH2P43246 RNU7-197P-201ENST00000458836 62 ntBASIC0.63□□□□□ -2.31
MSH2P43246 RNU7-79P-201ENST00000516082 62 ntBASIC0.63□□□□□ -2.31
MSH2P43246 RNU2-35P-201ENST00000516446 142 ntBASIC0.63□□□□□ -2.31
MSH2P43246 Y_RNA.690-201ENST00000516603 95 ntBASIC0.63□□□□□ -2.31
MSH2P43246 RNA5SP33-201ENST00000516687 98 ntBASIC0.63□□□□□ -2.31
MSH2P43246 RNU7-35P-201ENST00000517174 62 ntBASIC0.63□□□□□ -2.31
MSH2P43246 AC004812.1-201ENST00000540773 146 ntBASIC0.63□□□□□ -2.31
MSH2P43246 MIR8066-201ENST00000617280 78 ntBASIC0.63□□□□□ -2.31
MSH2P43246 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
MSH2P43246 MIR18A-201ENST00000362310 71 ntBASIC0.62□□□□□ -2.31
MSH2P43246 Y_RNA.42-201ENST00000362660 108 ntBASIC0.62□□□□□ -2.31
MSH2P43246 Y_RNA.270-201ENST00000364693 104 ntBASIC0.62□□□□□ -2.31
MSH2P43246 RNU4-45P-201ENST00000365469 141 ntBASIC0.62□□□□□ -2.31
MSH2P43246 RNU6-945P-201ENST00000383947 107 ntBASIC0.62□□□□□ -2.31
MSH2P43246 Y_RNA.531-201ENST00000384589 121 ntBASIC0.62□□□□□ -2.31
MSH2P43246 Y_RNA.588-201ENST00000391254 102 ntBASIC0.62□□□□□ -2.31
MSH2P43246 PCNPP3-201ENST00000393579 471 ntBASIC0.62□□□□□ -2.31
MSH2P43246 RNU6-733P-201ENST00000410759 104 ntBASIC0.62□□□□□ -2.31
MSH2P43246 MIR5000-201ENST00000577717 103 ntBASIC0.62□□□□□ -2.31
MSH2P43246 AC021443.1-201ENST00000604478 211 ntBASIC0.62□□□□□ -2.31
MSH2P43246 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.61□□□□□ -2.31
MSH2P43246 Y_RNA.150-201ENST00000363562 102 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms