Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AL603908.1-201ENST00000406098 201 ntBASIC0.85□□□□□ -2.27
HNF4AP41235 SNORD111-201ENST00000408139 94 ntBASIC0.85□□□□□ -2.27
HNF4AP41235 RNU6-1211P-201ENST00000459179 105 ntBASIC0.85□□□□□ -2.27
HNF4AP41235 RNU7-164P-201ENST00000459221 62 ntBASIC0.85□□□□□ -2.27
HNF4AP41235 RN7SKP19-201ENST00000516016 252 ntBASIC0.85□□□□□ -2.27
HNF4AP41235 RNU6-971P-201ENST00000516920 106 ntBASIC0.85□□□□□ -2.27
HNF4AP41235 AC004812.1-201ENST00000540773 146 ntBASIC0.85□□□□□ -2.27
HNF4AP41235 MIR3973-201ENST00000579824 107 ntBASIC0.85□□□□□ -2.27
HNF4AP41235 RNU6-94P-201ENST00000607728 107 ntBASIC0.85□□□□□ -2.27
HNF4AP41235 MIR6767-201ENST00000637302 66 ntBASIC0.85□□□□□ -2.27
HNF4AP41235 Y_RNA.298-201ENST00000364960 107 ntBASIC0.84□□□□□ -2.27
HNF4AP41235 RNU6-342P-201ENST00000384521 104 ntBASIC0.84□□□□□ -2.27
HNF4AP41235 Y_RNA.531-201ENST00000384589 121 ntBASIC0.84□□□□□ -2.27
HNF4AP41235 RNU6-1104P-201ENST00000384723 104 ntBASIC0.84□□□□□ -2.27
HNF4AP41235 MIR563-201ENST00000385080 79 ntBASIC0.84□□□□□ -2.27
HNF4AP41235 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.84□□□□□ -2.27
HNF4AP41235 AL022718.1-201ENST00000412004 84 ntBASIC0.84□□□□□ -2.27
HNF4AP41235 RNU6-893P-201ENST00000458841 100 ntBASIC0.84□□□□□ -2.27
HNF4AP41235 RNU7-62P-201ENST00000458856 62 ntBASIC0.84□□□□□ -2.27
HNF4AP41235 RNU7-123P-201ENST00000515911 60 ntBASIC0.84□□□□□ -2.27
HNF4AP41235 MIR8070-201ENST00000616510 88 ntBASIC0.84□□□□□ -2.27
HNF4AP41235 SNORD115-2-201ENST00000362842 82 ntBASIC0.83□□□□□ -2.28
HNF4AP41235 RNU6-647P-201ENST00000364243 107 ntBASIC0.83□□□□□ -2.28
HNF4AP41235 SNORD115-20-201ENST00000365099 82 ntBASIC0.83□□□□□ -2.28
HNF4AP41235 MIR100-201ENST00000385259 80 ntBASIC0.83□□□□□ -2.28
HNF4AP41235 Y_RNA.617-201ENST00000410920 90 ntBASIC0.83□□□□□ -2.28
HNF4AP41235 RNU7-113P-201ENST00000459273 62 ntBASIC0.83□□□□□ -2.28
HNF4AP41235 AC113410.1-201ENST00000505029 247 ntBASIC0.83□□□□□ -2.28
HNF4AP41235 RNU6-781P-201ENST00000516377 101 ntBASIC0.83□□□□□ -2.28
HNF4AP41235 MIR30D-201ENST00000362283 70 ntBASIC0.82□□□□□ -2.28
HNF4AP41235 SNORD114-2-201ENST00000363953 78 ntBASIC0.82□□□□□ -2.28
HNF4AP41235 SNORA18-201ENST00000384416 132 ntBASIC0.82□□□□□ -2.28
HNF4AP41235 RNU6-1165P-201ENST00000410119 107 ntBASIC0.82□□□□□ -2.28
HNF4AP41235 SNORD83.1-201ENST00000411362 77 ntBASIC0.82□□□□□ -2.28
HNF4AP41235 AC015818.7-201ENST00000428754 109 ntBASIC0.82□□□□□ -2.28
HNF4AP41235 AC087499.7-201ENST00000441958 109 ntBASIC0.82□□□□□ -2.28
HNF4AP41235 RNY4P20-201ENST00000516678 93 ntBASIC0.82□□□□□ -2.28
HNF4AP41235 RNA5SP33-201ENST00000516687 98 ntBASIC0.82□□□□□ -2.28
HNF4AP41235 RNU6-1234P-201ENST00000516877 103 ntBASIC0.82□□□□□ -2.28
HNF4AP41235 AC022523.2-201ENST00000561045 150 ntBASIC0.82□□□□□ -2.28
HNF4AP41235 AC013244.2-201ENST00000603396 103 ntBASIC0.82□□□□□ -2.28
HNF4AP41235 FAM71BP1-201ENST00000604431 523 ntBASIC0.82□□□□□ -2.28
HNF4AP41235 Y_RNA.218-201ENST00000364218 104 ntBASIC0.81□□□□□ -2.28
HNF4AP41235 RNU6-934P-201ENST00000365154 107 ntBASIC0.81□□□□□ -2.28
HNF4AP41235 SNORD114-22-201ENST00000365423 72 ntBASIC0.81□□□□□ -2.28
HNF4AP41235 Y_RNA.525-201ENST00000384570 113 ntBASIC0.81□□□□□ -2.28
HNF4AP41235 MT-TI-201ENST00000387365 69 ntBASIC0.81□□□□□ -2.28
HNF4AP41235 MIR1276-201ENST00000408707 83 ntBASIC0.81□□□□□ -2.28
HNF4AP41235 RNU6-369P-201ENST00000362515 102 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 MIR539-201ENST00000365690 78 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 MIR146A-201ENST00000385201 99 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 MIR1263-201ENST00000408324 86 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 AL606490.4-201ENST00000423117 127 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.8□□□□□ -2.28
HNF4AP41235 RNU7-107P-201ENST00000459121 61 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 MIR1270-201ENST00000459320 83 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 RNU6-351P-201ENST00000516097 100 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 AC141846.1-201ENST00000568348 142 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 MIR548AE2-201ENST00000583456 67 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 AL353765.1-201ENST00000605514 183 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 AL662814.1-201ENST00000617364 121 ntBASIC0.8□□□□□ -2.28
HNF4AP41235 HSBP1P2-201ENST00000299671 229 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 MIR373-201ENST00000362273 69 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 Y_RNA.71-201ENST00000362892 104 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 RNU6-81P-201ENST00000365608 104 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 SNORA32-201ENST00000384072 121 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 MIR520E-201ENST00000384867 87 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 MIR605-201ENST00000385078 83 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 RNA5SP237-201ENST00000410414 113 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 Y_RNA.630-201ENST00000411370 108 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 MIR18B-201ENST00000454574 71 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 RNU7-79P-201ENST00000516082 62 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 RNU7-35P-201ENST00000517174 62 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 MIR3910-1-201ENST00000580936 111 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 AC020891.4-201ENST00000605745 93 ntBASIC0.79□□□□□ -2.28
HNF4AP41235 RNU1-93P-201ENST00000364704 169 ntBASIC0.78□□□□□ -2.28
HNF4AP41235 RNY1P13-201ENST00000365030 105 ntBASIC0.78□□□□□ -2.28
HNF4AP41235 SNORA25.9-201ENST00000365087 128 ntBASIC0.78□□□□□ -2.28
HNF4AP41235 RNU6-110P-201ENST00000384508 104 ntBASIC0.78□□□□□ -2.28
HNF4AP41235 MIRLET7F2-201ENST00000385277 83 ntBASIC0.78□□□□□ -2.28
HNF4AP41235 RNU6-994P-201ENST00000410507 111 ntBASIC0.78□□□□□ -2.28
HNF4AP41235 RPS26P5-201ENST00000418544 335 ntBASIC0.78□□□□□ -2.28
HNF4AP41235 RNU6-1061P-201ENST00000516530 99 ntBASIC0.78□□□□□ -2.28
HNF4AP41235 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.78□□□□□ -2.28
HNF4AP41235 AL589743.1-201ENST00000551932 2712 ntBASIC0.78□□□□□ -2.29
HNF4AP41235 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.77□□□□□ -2.29
HNF4AP41235 SNORD58C-201ENST00000365223 64 ntBASIC0.77□□□□□ -2.29
HNF4AP41235 RNU6-80P-201ENST00000384195 107 ntBASIC0.77□□□□□ -2.29
HNF4AP41235 Y_RNA.528-201ENST00000384575 108 ntBASIC0.77□□□□□ -2.29
HNF4AP41235 RNU6-959P-201ENST00000384671 107 ntBASIC0.77□□□□□ -2.29
HNF4AP41235 U8.15-201ENST00000390947 134 ntBASIC0.77□□□□□ -2.29
HNF4AP41235 SNORD89-201ENST00000390981 114 ntBASIC0.77□□□□□ -2.29
HNF4AP41235 RNU4-69P-201ENST00000410677 143 ntBASIC0.77□□□□□ -2.29
HNF4AP41235 RNU6-1086P-201ENST00000410930 100 ntBASIC0.77□□□□□ -2.29
HNF4AP41235 TMSB4XP3-201ENST00000445144 114 ntBASIC0.77□□□□□ -2.29
HNF4AP41235 MIR4771-2-201ENST00000577758 74 ntBASIC0.77□□□□□ -2.29
HNF4AP41235 AC025627.3-201ENST00000582078 182 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms