Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 Y_RNA.76-201ENST00000362931 109 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 SNORD44.1-201ENST00000363202 61 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 Y_RNA.512-201ENST00000384518 102 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 RNU4-43P-201ENST00000410628 137 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 RNU7-45P-201ENST00000459460 63 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 RNA5SP134-201ENST00000516492 96 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 AC138869.1-201ENST00000568623 124 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 MIR4639-201ENST00000584938 69 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 AC244669.1-204ENST00000621564 178 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 U6.104-201ENST00000637979 90 ntBASIC0.13□□□□□ -2.39
SCN1AP35498 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.13□□□□□ -2.39
SCN1AP35498 RNU4-58P-201ENST00000363192 141 ntBASIC0.12□□□□□ -2.39
SCN1AP35498 RNY1P13-201ENST00000365030 105 ntBASIC0.12□□□□□ -2.39
SCN1AP35498 RNU6-381P-201ENST00000391259 108 ntBASIC0.12□□□□□ -2.39
SCN1AP35498 SNRPGP12-201ENST00000449481 213 ntBASIC0.12□□□□□ -2.39
SCN1AP35498 RNU7-35P-201ENST00000517174 62 ntBASIC0.12□□□□□ -2.39
SCN1AP35498 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.12□□□□□ -2.39
SCN1AP35498 MTND5P32-201ENST00000560711 1802 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 MIRLET7D-201ENST00000362263 87 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 Y_RNA.214-201ENST00000364201 112 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 RNU6-726P-201ENST00000364680 107 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 RNU6-923P-201ENST00000364753 107 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 Y_RNA.350-201ENST00000365409 98 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 Y_RNA.357-201ENST00000365487 109 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 SNORD24-201ENST00000383884 75 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 RNU6-1126P-201ENST00000384002 107 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 Y_RNA.539-201ENST00000384635 107 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 SNORD12C-201ENST00000386307 89 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 RNU6-1321P-201ENST00000390905 107 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 AC011921.3-201ENST00000605540 361 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 RNA5SP214-201ENST00000363378 118 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 Y_RNA.440-201ENST00000384120 114 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 RNY1P6-201ENST00000384193 109 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 RNU6-1289P-201ENST00000384431 106 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 MIR5589-201ENST00000579442 60 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 MIR4676-201ENST00000583078 72 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.11□□□□□ -2.39
SCN1AP35498 SNORA63-201ENST00000363450 132 ntBASIC0.1□□□□□ -2.39
SCN1AP35498 Y_RNA.542-201ENST00000384641 111 ntBASIC0.1□□□□□ -2.39
SCN1AP35498 MIR1295A-201ENST00000408463 79 ntBASIC0.1□□□□□ -2.39
SCN1AP35498 SNORD127-201ENST00000458892 86 ntBASIC0.1□□□□□ -2.39
SCN1AP35498 RNU4-71P-201ENST00000516258 113 ntBASIC0.1□□□□□ -2.39
SCN1AP35498 MIR8062-201ENST00000621515 85 ntBASIC0.1□□□□□ -2.39
SCN1AP35498 Y_RNA.68-201ENST00000362881 102 ntBASIC0.09□□□□□ -2.39
SCN1AP35498 SNORD114-9-201ENST00000364370 72 ntBASIC0.09□□□□□ -2.39
SCN1AP35498 RNU6-643P-201ENST00000384018 107 ntBASIC0.09□□□□□ -2.39
SCN1AP35498 Y_RNA.470-201ENST00000384307 117 ntBASIC0.09□□□□□ -2.39
SCN1AP35498 Y_RNA.571-201ENST00000384753 98 ntBASIC0.09□□□□□ -2.39
SCN1AP35498 RNU2-59P-201ENST00000410482 191 ntBASIC0.09□□□□□ -2.39
SCN1AP35498 RNA5SP236-201ENST00000516169 116 ntBASIC0.09□□□□□ -2.39
SCN1AP35498 RNY3P16-201ENST00000516338 101 ntBASIC0.09□□□□□ -2.39
SCN1AP35498 AC069113.3-201ENST00000521019 150 ntBASIC0.09□□□□□ -2.39
SCN1AP35498 U6.109-201ENST00000636749 87 ntBASIC0.09□□□□□ -2.39
SCN1AP35498 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.09□□□□□ -2.39
SCN1AP35498 Y_RNA.65-201ENST00000362846 100 ntBASIC0.09□□□□□ -2.4
SCN1AP35498 Y_RNA.362-201ENST00000365518 110 ntBASIC0.09□□□□□ -2.4
SCN1AP35498 SNORA2A-201ENST00000383885 135 ntBASIC0.09□□□□□ -2.4
SCN1AP35498 MIR1912-201ENST00000410389 80 ntBASIC0.09□□□□□ -2.4
SCN1AP35498 AL022718.1-201ENST00000412004 84 ntBASIC0.09□□□□□ -2.4
SCN1AP35498 SNORA42.1-201ENST00000363515 137 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 RNU6-1292P-201ENST00000383856 107 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 Y_RNA.461-201ENST00000384263 103 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 MIR643-201ENST00000385267 97 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 RNU6-578P-201ENST00000390980 103 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 RNU2-38P-201ENST00000410856 79 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 BX276092.1-201ENST00000427368 251 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 SNORD67.1-201ENST00000516618 108 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 RNU6-1258P-201ENST00000516911 111 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 AC138907.4-201ENST00000570107 226 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 MIR4431-201ENST00000579990 94 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 AL360085.1-201ENST00000604713 532 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 AC011603.4-201ENST00000611325 277 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 RNU4-67P-201ENST00000364569 141 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 Y_RNA.422-201ENST00000384054 114 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 SNORD28-201ENST00000384706 75 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 MIR588-201ENST00000384900 83 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 U8.15-201ENST00000390947 134 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 RNU6-765P-201ENST00000516916 99 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 AC112693.2-201ENST00000556538 232 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 MIR6082-201ENST00000613604 109 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 AC021613.1-201ENST00000623880 111 ntBASIC0.08□□□□□ -2.4
SCN1AP35498 RNA5SP133-201ENST00000363368 119 ntBASIC0.07□□□□□ -2.4
SCN1AP35498 Y_RNA.574-201ENST00000384766 95 ntBASIC0.07□□□□□ -2.4
SCN1AP35498 Y_RNA.588-201ENST00000391254 102 ntBASIC0.07□□□□□ -2.4
SCN1AP35498 AF228730.3-201ENST00000436691 102 ntBASIC0.07□□□□□ -2.4
SCN1AP35498 RNU6-327P-201ENST00000516270 127 ntBASIC0.07□□□□□ -2.4
SCN1AP35498 SNORD116-25-201ENST00000516517 92 ntBASIC0.07□□□□□ -2.4
SCN1AP35498 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.07□□□□□ -2.4
SCN1AP35498 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.07□□□□□ -2.4
SCN1AP35498 Y_RNA.13-201ENST00000362403 112 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 RNU6-509P-201ENST00000363519 107 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 RNU6-690P-201ENST00000365242 106 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 MIR548L-201ENST00000408303 86 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 RNU6-1086P-201ENST00000410930 100 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 RNU7-79P-201ENST00000516082 62 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 AC138749.4-201ENST00000563970 127 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 MIR378D2-201ENST00000580636 98 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 Y_RNA.60-201ENST00000362831 98 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 SNORA72.6-201ENST00000384520 129 ntBASIC0.06□□□□□ -2.4
SCN1AP35498 Y_RNA.618-201ENST00000410949 107 ntBASIC0.06□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 206.8 ms