Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
HOXD3P31249 Y_RNA.354-201ENST00000365448 111 ntBASIC1.17□□□□□ -2.22
HOXD3P31249 SNORD116-21-201ENST00000384507 92 ntBASIC1.17□□□□□ -2.22
HOXD3P31249 RNU6-910P-201ENST00000390844 107 ntBASIC1.17□□□□□ -2.22
HOXD3P31249 RNU6-955P-201ENST00000410497 104 ntBASIC1.17□□□□□ -2.22
HOXD3P31249 RNU4-69P-201ENST00000410677 143 ntBASIC1.17□□□□□ -2.22
HOXD3P31249 SNORA31.24-201ENST00000517232 57 ntBASIC1.17□□□□□ -2.22
HOXD3P31249 Y_RNA.773-201ENST00000607168 90 ntBASIC1.17□□□□□ -2.22
HOXD3P31249 ZNF209P-201ENST00000593450 2304 ntBASIC1.16□□□□□ -2.22
HOXD3P31249 MIR26B-201ENST00000362251 77 ntBASIC1.16□□□□□ -2.22
HOXD3P31249 Y_RNA.213-201ENST00000364178 111 ntBASIC1.16□□□□□ -2.22
HOXD3P31249 Y_RNA.344-201ENST00000365381 112 ntBASIC1.16□□□□□ -2.22
HOXD3P31249 SNORD26-201ENST00000384147 75 ntBASIC1.16□□□□□ -2.22
HOXD3P31249 MIR518E-201ENST00000385252 88 ntBASIC1.16□□□□□ -2.22
HOXD3P31249 MIR759-201ENST00000390224 91 ntBASIC1.16□□□□□ -2.22
HOXD3P31249 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.16□□□□□ -2.22
HOXD3P31249 AC023790.1-201ENST00000482174 347 ntBASIC1.16□□□□□ -2.22
HOXD3P31249 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.16□□□□□ -2.22
HOXD3P31249 AL035470.1-201ENST00000622571 220 ntBASIC1.16□□□□□ -2.22
HOXD3P31249 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.16□□□□□ -2.22
HOXD3P31249 AL589743.1-201ENST00000551932 2712 ntBASIC1.15□□□□□ -2.23
HOXD3P31249 RNA5SP327-201ENST00000362494 101 ntBASIC1.15□□□□□ -2.23
HOXD3P31249 RNU6-215P-201ENST00000365169 102 ntBASIC1.15□□□□□ -2.23
HOXD3P31249 MIR588-201ENST00000384900 83 ntBASIC1.15□□□□□ -2.23
HOXD3P31249 MIR1304-201ENST00000408243 91 ntBASIC1.15□□□□□ -2.23
HOXD3P31249 AL354695.1-201ENST00000427935 228 ntBASIC1.15□□□□□ -2.23
HOXD3P31249 snoU13.2-201ENST00000459201 104 ntBASIC1.15□□□□□ -2.23
HOXD3P31249 snoU13.21-201ENST00000459368 105 ntBASIC1.15□□□□□ -2.23
HOXD3P31249 snoU13.18-201ENST00000459483 104 ntBASIC1.15□□□□□ -2.23
HOXD3P31249 RNU7-79P-201ENST00000516082 62 ntBASIC1.15□□□□□ -2.23
HOXD3P31249 MIR2115-201ENST00000516657 100 ntBASIC1.15□□□□□ -2.23
HOXD3P31249 MIR4421-201ENST00000578133 69 ntBASIC1.15□□□□□ -2.23
HOXD3P31249 SEPT14P17-201ENST00000617978 177 ntBASIC1.15□□□□□ -2.23
HOXD3P31249 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.15□□□□□ -2.23
HOXD3P31249 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
HOXD3P31249 RNU6-834P-201ENST00000362367 110 ntBASIC1.14□□□□□ -2.23
HOXD3P31249 SNORA63.5-201ENST00000363548 123 ntBASIC1.14□□□□□ -2.23
HOXD3P31249 RNY4P6-201ENST00000363667 96 ntBASIC1.14□□□□□ -2.23
HOXD3P31249 Y_RNA.362-201ENST00000365518 110 ntBASIC1.14□□□□□ -2.23
HOXD3P31249 RNU6-616P-201ENST00000384353 107 ntBASIC1.14□□□□□ -2.23
HOXD3P31249 MIR548D2-201ENST00000384955 97 ntBASIC1.14□□□□□ -2.23
HOXD3P31249 RNU6-613P-201ENST00000410412 108 ntBASIC1.14□□□□□ -2.23
HOXD3P31249 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.14□□□□□ -2.23
HOXD3P31249 RNU11-2P-201ENST00000516898 142 ntBASIC1.14□□□□□ -2.23
HOXD3P31249 RNU7-35P-201ENST00000517174 62 ntBASIC1.14□□□□□ -2.23
HOXD3P31249 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.14□□□□□ -2.23
HOXD3P31249 AC023827.1-201ENST00000569247 97 ntBASIC1.14□□□□□ -2.23
HOXD3P31249 MIR3163-201ENST00000581592 73 ntBASIC1.14□□□□□ -2.23
HOXD3P31249 MIR1255B1-201ENST00000636325 63 ntBASIC1.14□□□□□ -2.23
HOXD3P31249 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.13□□□□□ -2.23
HOXD3P31249 Y_RNA.116-201ENST00000363292 103 ntBASIC1.13□□□□□ -2.23
HOXD3P31249 RNU6-44P-201ENST00000384045 107 ntBASIC1.13□□□□□ -2.23
HOXD3P31249 SNORA2B-201ENST00000384583 137 ntBASIC1.13□□□□□ -2.23
HOXD3P31249 RNU6-1086P-201ENST00000410930 100 ntBASIC1.13□□□□□ -2.23
HOXD3P31249 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.13□□□□□ -2.23
HOXD3P31249 MIR4264-201ENST00000583520 66 ntBASIC1.13□□□□□ -2.23
HOXD3P31249 AP000753.3-201ENST00000604083 169 ntBASIC1.13□□□□□ -2.23
HOXD3P31249 RNU6-392P-201ENST00000364926 101 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 Y_RNA.299-201ENST00000364973 94 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 RNY1P13-201ENST00000365030 105 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 SNORA22-201ENST00000383907 134 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 RNY4P18-201ENST00000391107 89 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 RNA5SP237-201ENST00000410414 113 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 AC015818.7-201ENST00000428754 109 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 AC087499.7-201ENST00000441958 109 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 RNU7-62P-201ENST00000458856 62 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 RNU6-589P-201ENST00000516485 107 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 SNORD67.1-201ENST00000516618 108 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 AC036111.3-201ENST00000526389 112 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 AC141846.1-201ENST00000568348 142 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 AL662814.1-201ENST00000617364 121 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 AC105081.1-201ENST00000617727 106 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 AC008163.1-202ENST00000636004 2889 ntBASIC1.12□□□□□ -2.23
HOXD3P31249 RNU6-580P-201ENST00000365159 107 ntBASIC1.11□□□□□ -2.23
HOXD3P31249 MIR563-201ENST00000385080 79 ntBASIC1.11□□□□□ -2.23
HOXD3P31249 MT-TN-201ENST00000387400 73 ntBASIC1.11□□□□□ -2.23
HOXD3P31249 MIR1276-201ENST00000408707 83 ntBASIC1.11□□□□□ -2.23
HOXD3P31249 AL591704.2-201ENST00000421658 181 ntBASIC1.11□□□□□ -2.23
HOXD3P31249 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.11□□□□□ -2.23
HOXD3P31249 RNU7-21P-201ENST00000459430 62 ntBASIC1.11□□□□□ -2.23
HOXD3P31249 SNORD79.1-201ENST00000516069 84 ntBASIC1.11□□□□□ -2.23
HOXD3P31249 Y_RNA.709-201ENST00000516952 92 ntBASIC1.11□□□□□ -2.23
HOXD3P31249 SNORA70.22-201ENST00000517160 124 ntBASIC1.11□□□□□ -2.23
HOXD3P31249 AL353770.2-201ENST00000620024 78 ntBASIC1.11□□□□□ -2.23
HOXD3P31249 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
HOXD3P31249 MIR30D-201ENST00000362283 70 ntBASIC1.1□□□□□ -2.23
HOXD3P31249 SNORA63.4-201ENST00000362763 126 ntBASIC1.1□□□□□ -2.23
HOXD3P31249 SNORA80D-201ENST00000384488 135 ntBASIC1.1□□□□□ -2.23
HOXD3P31249 RNU6-880P-201ENST00000384526 107 ntBASIC1.1□□□□□ -2.23
HOXD3P31249 MIR489-201ENST00000384923 84 ntBASIC1.1□□□□□ -2.23
HOXD3P31249 MIR150-201ENST00000385048 84 ntBASIC1.1□□□□□ -2.23
HOXD3P31249 MIR320A-201ENST00000385302 82 ntBASIC1.1□□□□□ -2.23
HOXD3P31249 RNU6-1307P-201ENST00000391012 103 ntBASIC1.1□□□□□ -2.23
HOXD3P31249 RNU6-1165P-201ENST00000410119 107 ntBASIC1.1□□□□□ -2.23
HOXD3P31249 AL035461.1-201ENST00000421490 332 ntBASIC1.1□□□□□ -2.23
HOXD3P31249 AC063976.4-201ENST00000421971 163 ntBASIC1.1□□□□□ -2.23
HOXD3P31249 MIR4679-2-201ENST00000578358 77 ntBASIC1.1□□□□□ -2.23
HOXD3P31249 Y_RNA.281-201ENST00000364774 94 ntBASIC1.09□□□□□ -2.23
HOXD3P31249 SNORD83.1-201ENST00000411362 77 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 204.9 ms