Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SNORD71-201ENST00000411292 86 ntBASIC0.27□□□□□ -2.37
SDC1P18827 AC062037.2-201ENST00000610137 73 ntBASIC0.27□□□□□ -2.37
SDC1P18827 uc_338.16-201ENST00000621804 95 ntBASIC0.27□□□□□ -2.37
SDC1P18827 AC090625.1-201ENST00000357130 210 ntBASIC0.26□□□□□ -2.37
SDC1P18827 Y_RNA.32-201ENST00000362589 110 ntBASIC0.26□□□□□ -2.37
SDC1P18827 Y_RNA.75-201ENST00000362927 97 ntBASIC0.26□□□□□ -2.37
SDC1P18827 SNORD44.1-201ENST00000363202 61 ntBASIC0.26□□□□□ -2.37
SDC1P18827 SNORA36.1-201ENST00000363424 132 ntBASIC0.26□□□□□ -2.37
SDC1P18827 SNORD118-201ENST00000363593 134 ntBASIC0.26□□□□□ -2.37
SDC1P18827 Y_RNA.171-201ENST00000363760 102 ntBASIC0.26□□□□□ -2.37
SDC1P18827 RNY1P13-201ENST00000365030 105 ntBASIC0.26□□□□□ -2.37
SDC1P18827 Y_RNA.355-201ENST00000365462 98 ntBASIC0.26□□□□□ -2.37
SDC1P18827 RNY1P6-201ENST00000384193 109 ntBASIC0.26□□□□□ -2.37
SDC1P18827 Y_RNA.508-201ENST00000384502 114 ntBASIC0.26□□□□□ -2.37
SDC1P18827 AL118496.2-201ENST00000448300 230 ntBASIC0.26□□□□□ -2.37
SDC1P18827 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.26□□□□□ -2.37
SDC1P18827 RNU4-71P-201ENST00000516258 113 ntBASIC0.26□□□□□ -2.37
SDC1P18827 RNA5SP134-201ENST00000516492 96 ntBASIC0.26□□□□□ -2.37
SDC1P18827 Y_RNA.52-201ENST00000362760 96 ntBASIC0.25□□□□□ -2.37
SDC1P18827 RNY1-201ENST00000364228 113 ntBASIC0.25□□□□□ -2.37
SDC1P18827 SNORA72.6-201ENST00000384520 129 ntBASIC0.25□□□□□ -2.37
SDC1P18827 MIR598-201ENST00000384868 97 ntBASIC0.25□□□□□ -2.37
SDC1P18827 RNU6-918P-201ENST00000391219 106 ntBASIC0.25□□□□□ -2.37
SDC1P18827 SNRPGP12-201ENST00000449481 213 ntBASIC0.25□□□□□ -2.37
SDC1P18827 AC108740.1-201ENST00000498629 225 ntBASIC0.25□□□□□ -2.37
SDC1P18827 RNU6-1045P-201ENST00000516321 107 ntBASIC0.25□□□□□ -2.37
SDC1P18827 RNU6-765P-201ENST00000516916 99 ntBASIC0.25□□□□□ -2.37
SDC1P18827 RNU6-111P-201ENST00000517179 105 ntBASIC0.25□□□□□ -2.37
SDC1P18827 AC022523.2-201ENST00000561045 150 ntBASIC0.25□□□□□ -2.37
SDC1P18827 AL589743.1-201ENST00000551932 2712 ntBASIC0.25□□□□□ -2.37
SDC1P18827 Y_RNA.162-201ENST00000363683 102 ntBASIC0.24□□□□□ -2.37
SDC1P18827 RNU6-1327P-201ENST00000365302 105 ntBASIC0.24□□□□□ -2.37
SDC1P18827 VTRNA1-3-201ENST00000365645 89 ntBASIC0.24□□□□□ -2.37
SDC1P18827 Y_RNA.515-201ENST00000384535 112 ntBASIC0.24□□□□□ -2.37
SDC1P18827 RNA5SP193-201ENST00000410353 107 ntBASIC0.24□□□□□ -2.37
SDC1P18827 RNA5SP144-201ENST00000410846 116 ntBASIC0.24□□□□□ -2.37
SDC1P18827 RNU5E-9P-201ENST00000411164 104 ntBASIC0.24□□□□□ -2.37
SDC1P18827 RNU6-893P-201ENST00000458841 100 ntBASIC0.24□□□□□ -2.37
SDC1P18827 RNU6-1023P-201ENST00000516137 106 ntBASIC0.24□□□□□ -2.37
SDC1P18827 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.24□□□□□ -2.37
SDC1P18827 RNU6-349P-201ENST00000362402 107 ntBASIC0.23□□□□□ -2.37
SDC1P18827 Y_RNA.118-201ENST00000363300 101 ntBASIC0.23□□□□□ -2.37
SDC1P18827 Y_RNA.521-201ENST00000384560 114 ntBASIC0.23□□□□□ -2.37
SDC1P18827 RNU6-1086P-201ENST00000410930 100 ntBASIC0.23□□□□□ -2.37
SDC1P18827 AL512326.2-201ENST00000426359 151 ntBASIC0.23□□□□□ -2.37
SDC1P18827 RNA5SP236-201ENST00000516169 116 ntBASIC0.23□□□□□ -2.37
SDC1P18827 RNU6-469P-201ENST00000516253 101 ntBASIC0.23□□□□□ -2.37
SDC1P18827 SNORA31.14-201ENST00000516728 116 ntBASIC0.23□□□□□ -2.37
SDC1P18827 SNORA25.16-201ENST00000516741 121 ntBASIC0.23□□□□□ -2.37
SDC1P18827 U4.1-201ENST00000620349 87 ntBASIC0.23□□□□□ -2.37
SDC1P18827 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.23□□□□□ -2.37
SDC1P18827 RNU6-47P-201ENST00000383866 107 ntBASIC0.22□□□□□ -2.37
SDC1P18827 Y_RNA.435-201ENST00000384095 112 ntBASIC0.22□□□□□ -2.37
SDC1P18827 Y_RNA.447-201ENST00000384184 113 ntBASIC0.22□□□□□ -2.37
SDC1P18827 Y_RNA.470-201ENST00000384307 117 ntBASIC0.22□□□□□ -2.37
SDC1P18827 RNU6-768P-201ENST00000384683 107 ntBASIC0.22□□□□□ -2.37
SDC1P18827 RNU6-291P-201ENST00000384720 107 ntBASIC0.22□□□□□ -2.37
SDC1P18827 MTND5P34-201ENST00000568888 325 ntBASIC0.22□□□□□ -2.37
SDC1P18827 MIR4431-201ENST00000579990 94 ntBASIC0.22□□□□□ -2.37
SDC1P18827 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.22□□□□□ -2.37
SDC1P18827 AC078938.1-201ENST00000620993 318 ntBASIC0.22□□□□□ -2.37
SDC1P18827 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.22□□□□□ -2.37
SDC1P18827 MIR411-201ENST00000362239 96 ntBASIC0.21□□□□□ -2.38
SDC1P18827 SNORD114-23-201ENST00000363536 72 ntBASIC0.21□□□□□ -2.38
SDC1P18827 RNU6-1082P-201ENST00000364574 107 ntBASIC0.21□□□□□ -2.38
SDC1P18827 SNORA20.1-201ENST00000364790 130 ntBASIC0.21□□□□□ -2.38
SDC1P18827 Y_RNA.307-201ENST00000365022 117 ntBASIC0.21□□□□□ -2.38
SDC1P18827 Y_RNA.393-201ENST00000383936 102 ntBASIC0.21□□□□□ -2.38
SDC1P18827 Y_RNA.536-201ENST00000384621 113 ntBASIC0.21□□□□□ -2.38
SDC1P18827 MTND3P2-201ENST00000438452 342 ntBASIC0.21□□□□□ -2.38
SDC1P18827 RNU7-79P-201ENST00000516082 62 ntBASIC0.21□□□□□ -2.38
SDC1P18827 RNU7-35P-201ENST00000517174 62 ntBASIC0.21□□□□□ -2.38
SDC1P18827 MIR4503-201ENST00000582187 83 ntBASIC0.21□□□□□ -2.38
SDC1P18827 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
SDC1P18827 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.21□□□□□ -2.38
SDC1P18827 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
SDC1P18827 RNA5SP62-201ENST00000363457 110 ntBASIC0.2□□□□□ -2.38
SDC1P18827 Y_RNA.174-201ENST00000363781 105 ntBASIC0.2□□□□□ -2.38
SDC1P18827 RNU6-702P-201ENST00000364982 107 ntBASIC0.2□□□□□ -2.38
SDC1P18827 RNU7-113P-201ENST00000459273 62 ntBASIC0.2□□□□□ -2.38
SDC1P18827 Y_RNA.697-201ENST00000516776 113 ntBASIC0.2□□□□□ -2.38
SDC1P18827 RNA5SP268-201ENST00000516828 124 ntBASIC0.2□□□□□ -2.38
SDC1P18827 Y_RNA.193-201ENST00000363979 102 ntBASIC0.19□□□□□ -2.38
SDC1P18827 Y_RNA.200-201ENST00000364018 102 ntBASIC0.19□□□□□ -2.38
SDC1P18827 RNU6-574P-201ENST00000384265 107 ntBASIC0.19□□□□□ -2.38
SDC1P18827 RNU6-535P-201ENST00000384722 107 ntBASIC0.19□□□□□ -2.38
SDC1P18827 AL022718.1-201ENST00000412004 84 ntBASIC0.19□□□□□ -2.38
SDC1P18827 MIR3149-201ENST00000584629 83 ntBASIC0.19□□□□□ -2.38
SDC1P18827 SNORD115-2-201ENST00000362842 82 ntBASIC0.18□□□□□ -2.38
SDC1P18827 Y_RNA.83-201ENST00000363005 113 ntBASIC0.18□□□□□ -2.38
SDC1P18827 Y_RNA.120-201ENST00000363304 110 ntBASIC0.18□□□□□ -2.38
SDC1P18827 SNORD115-20-201ENST00000365099 82 ntBASIC0.18□□□□□ -2.38
SDC1P18827 SNORA32-201ENST00000384072 121 ntBASIC0.18□□□□□ -2.38
SDC1P18827 RNU6-196P-201ENST00000384315 107 ntBASIC0.18□□□□□ -2.38
SDC1P18827 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.18□□□□□ -2.38
SDC1P18827 SUMO1P3-201ENST00000439961 304 ntBASIC0.18□□□□□ -2.38
SDC1P18827 RNU6-1219P-201ENST00000516143 112 ntBASIC0.18□□□□□ -2.38
SDC1P18827 RNA5SP33-201ENST00000516687 98 ntBASIC0.18□□□□□ -2.38
SDC1P18827 MIR7107-201ENST00000611489 80 ntBASIC0.18□□□□□ -2.38
SDC1P18827 RNU6-1020P-201ENST00000363684 107 ntBASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 138.3 ms