Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SNORD113.3-201ENST00000364630 78 ntBASIC0.8□□□□□ -2.28
HOXD4P09016 RNU6-580P-201ENST00000365159 107 ntBASIC0.8□□□□□ -2.28
HOXD4P09016 RNA5SP144-201ENST00000410846 116 ntBASIC0.8□□□□□ -2.28
HOXD4P09016 RNU7-62P-201ENST00000458856 62 ntBASIC0.8□□□□□ -2.28
HOXD4P09016 snoU13.21-201ENST00000459368 105 ntBASIC0.8□□□□□ -2.28
HOXD4P09016 SNORD124-201ENST00000459577 104 ntBASIC0.8□□□□□ -2.28
HOXD4P09016 RNU6-1258P-201ENST00000516911 111 ntBASIC0.8□□□□□ -2.28
HOXD4P09016 AP001328.1-201ENST00000528550 176 ntBASIC0.8□□□□□ -2.28
HOXD4P09016 MIR3133-201ENST00000583157 78 ntBASIC0.8□□□□□ -2.28
HOXD4P09016 AP001340.1-201ENST00000624405 217 ntBASIC0.8□□□□□ -2.28
HOXD4P09016 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
HOXD4P09016 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
HOXD4P09016 Y_RNA.294-201ENST00000364916 102 ntBASIC0.79□□□□□ -2.28
HOXD4P09016 MIR588-201ENST00000384900 83 ntBASIC0.79□□□□□ -2.28
HOXD4P09016 AC004941.2-201ENST00000427009 228 ntBASIC0.79□□□□□ -2.28
HOXD4P09016 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.79□□□□□ -2.28
HOXD4P09016 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.79□□□□□ -2.28
HOXD4P09016 Y_RNA.703-201ENST00000516846 111 ntBASIC0.79□□□□□ -2.28
HOXD4P09016 AC133485.4-201ENST00000561835 220 ntBASIC0.79□□□□□ -2.28
HOXD4P09016 AC138907.4-201ENST00000570107 226 ntBASIC0.79□□□□□ -2.28
HOXD4P09016 Y_RNA.757-201ENST00000578934 114 ntBASIC0.79□□□□□ -2.28
HOXD4P09016 MIR3121-201ENST00000579680 77 ntBASIC0.79□□□□□ -2.28
HOXD4P09016 AC108081.1-201ENST00000604358 221 ntBASIC0.79□□□□□ -2.28
HOXD4P09016 AC010332.2-201ENST00000613083 1904 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 Y_RNA.171-201ENST00000363760 102 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 RNU1-36P-201ENST00000365130 165 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 Y_RNA.343-201ENST00000365354 112 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 Y_RNA.366-201ENST00000365540 102 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 Y_RNA.568-201ENST00000384742 113 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 MIR216A-201ENST00000385063 110 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 SNORD111-201ENST00000408139 94 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 snoU13.2-201ENST00000459201 104 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 RNU2-35P-201ENST00000516446 142 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 Y_RNA.692-201ENST00000516627 105 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 MIR4305-201ENST00000583252 102 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 AC021443.1-201ENST00000604478 211 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.78□□□□□ -2.28
HOXD4P09016 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
HOXD4P09016 MIR563-201ENST00000385080 79 ntBASIC0.77□□□□□ -2.29
HOXD4P09016 RNU6-994P-201ENST00000410507 111 ntBASIC0.77□□□□□ -2.29
HOXD4P09016 MTND4LP9-201ENST00000427694 174 ntBASIC0.77□□□□□ -2.29
HOXD4P09016 MIR4698-201ENST00000577795 80 ntBASIC0.77□□□□□ -2.29
HOXD4P09016 U7.2-201ENST00000607576 63 ntBASIC0.77□□□□□ -2.29
HOXD4P09016 Y_RNA.114-201ENST00000363265 113 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 Y_RNA.280-201ENST00000364765 112 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 RNU6-746P-201ENST00000384112 109 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 RNU6-187P-201ENST00000384139 106 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 Y_RNA.470-201ENST00000384307 117 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 RNY1P4-201ENST00000384595 115 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 RNU6-1237P-201ENST00000384777 107 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 RNU6-1165P-201ENST00000410119 107 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 RNU6-257P-201ENST00000410238 98 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 SNORD83.1-201ENST00000411362 77 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 AL022718.1-201ENST00000412004 84 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 AL512326.2-201ENST00000426359 151 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 AC015818.7-201ENST00000428754 109 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 AC087499.7-201ENST00000441958 109 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 RNU6-893P-201ENST00000458841 100 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 IGKV1-22-201ENST00000524313 326 ntBASIC0.76□□□□□ -2.29
HOXD4P09016 MIR942-201ENST00000401111 86 ntBASIC0.75□□□□□ -2.29
HOXD4P09016 RNU7-164P-201ENST00000459221 62 ntBASIC0.75□□□□□ -2.29
HOXD4P09016 RNU7-113P-201ENST00000459273 62 ntBASIC0.75□□□□□ -2.29
HOXD4P09016 AC113410.1-201ENST00000505029 247 ntBASIC0.75□□□□□ -2.29
HOXD4P09016 PDCD5P2-201ENST00000507570 312 ntBASIC0.75□□□□□ -2.29
HOXD4P09016 RNU7-123P-201ENST00000515911 60 ntBASIC0.75□□□□□ -2.29
HOXD4P09016 AL137067.1-201ENST00000615933 120 ntBASIC0.75□□□□□ -2.29
HOXD4P09016 AL662814.1-201ENST00000617364 121 ntBASIC0.75□□□□□ -2.29
HOXD4P09016 MIR30D-201ENST00000362283 70 ntBASIC0.74□□□□□ -2.29
HOXD4P09016 RNU6-369P-201ENST00000362515 102 ntBASIC0.74□□□□□ -2.29
HOXD4P09016 Y_RNA.298-201ENST00000364960 107 ntBASIC0.74□□□□□ -2.29
HOXD4P09016 SNORA18-201ENST00000384416 132 ntBASIC0.74□□□□□ -2.29
HOXD4P09016 SNORA40-201ENST00000388090 126 ntBASIC0.74□□□□□ -2.29
HOXD4P09016 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.74□□□□□ -2.29
HOXD4P09016 RNY4P20-201ENST00000516678 93 ntBASIC0.74□□□□□ -2.29
HOXD4P09016 AC004812.1-201ENST00000540773 146 ntBASIC0.74□□□□□ -2.29
HOXD4P09016 MIR4714-201ENST00000580728 77 ntBASIC0.74□□□□□ -2.29
HOXD4P09016 FAM71BP1-201ENST00000604431 523 ntBASIC0.74□□□□□ -2.29
HOXD4P09016 SNORD115-2-201ENST00000362842 82 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 SNORD115-20-201ENST00000365099 82 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 RNU6-934P-201ENST00000365154 107 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 Y_RNA.586-201ENST00000391146 98 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 MIR548M-201ENST00000408260 86 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 RNA5SP237-201ENST00000410414 113 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 FABP5P4-201ENST00000437203 171 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 SUMO1P3-201ENST00000439961 304 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 RNU6-351P-201ENST00000516097 100 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 AC141846.1-201ENST00000568348 142 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 MIR4771-2-201ENST00000577758 74 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 MIR4771-1-201ENST00000582617 74 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 AC013244.2-201ENST00000603396 103 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 TUG1_4.1-201ENST00000619464 181 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 MIR6866-201ENST00000638146 69 ntBASIC0.73□□□□□ -2.29
HOXD4P09016 SNORD114-2-201ENST00000363953 78 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 SNORA32-201ENST00000384072 121 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 Y_RNA.531-201ENST00000384589 121 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 SNORD89-201ENST00000390981 114 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 MIR1827-201ENST00000408549 66 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 RPS26P5-201ENST00000418544 335 ntBASIC0.72□□□□□ -2.29
HOXD4P09016 AL158147.1-201ENST00000443970 75 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms