Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.36□□□□□ -2.35
SIX3O95343 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.36□□□□□ -2.35
SIX3O95343 MIR30D-201ENST00000362283 70 ntBASIC0.35□□□□□ -2.35
SIX3O95343 SNORD118-201ENST00000363593 134 ntBASIC0.35□□□□□ -2.35
SIX3O95343 Y_RNA.277-201ENST00000364754 102 ntBASIC0.35□□□□□ -2.35
SIX3O95343 Y_RNA.352-201ENST00000365439 102 ntBASIC0.35□□□□□ -2.35
SIX3O95343 MIR563-201ENST00000385080 79 ntBASIC0.35□□□□□ -2.35
SIX3O95343 SNORA40.8-201ENST00000411034 126 ntBASIC0.35□□□□□ -2.35
SIX3O95343 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.35□□□□□ -2.35
SIX3O95343 RNU6-561P-201ENST00000516222 102 ntBASIC0.35□□□□□ -2.35
SIX3O95343 SNORD116-25-201ENST00000516517 92 ntBASIC0.35□□□□□ -2.35
SIX3O95343 MIRLET7D-201ENST00000362263 87 ntBASIC0.34□□□□□ -2.36
SIX3O95343 MT-TW-201ENST00000387382 68 ntBASIC0.34□□□□□ -2.36
SIX3O95343 RNA5SP134-201ENST00000516492 96 ntBASIC0.34□□□□□ -2.36
SIX3O95343 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.34□□□□□ -2.36
SIX3O95343 RNY1P9-201ENST00000532431 109 ntBASIC0.34□□□□□ -2.36
SIX3O95343 AP001180.6-201ENST00000584918 159 ntBASIC0.34□□□□□ -2.36
SIX3O95343 AL442067.1-201ENST00000613261 223 ntBASIC0.34□□□□□ -2.36
SIX3O95343 AC090625.1-201ENST00000357130 210 ntBASIC0.33□□□□□ -2.36
SIX3O95343 RNA5SP517-201ENST00000364724 117 ntBASIC0.33□□□□□ -2.36
SIX3O95343 RNU6-1292P-201ENST00000383856 107 ntBASIC0.33□□□□□ -2.36
SIX3O95343 SNORA72.6-201ENST00000384520 129 ntBASIC0.33□□□□□ -2.36
SIX3O95343 Y_RNA.515-201ENST00000384535 112 ntBASIC0.33□□□□□ -2.36
SIX3O95343 RNU6-1160P-201ENST00000384546 104 ntBASIC0.33□□□□□ -2.36
SIX3O95343 Y_RNA.567-201ENST00000384736 106 ntBASIC0.33□□□□□ -2.36
SIX3O95343 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.33□□□□□ -2.36
SIX3O95343 RNA5SP94-201ENST00000516917 108 ntBASIC0.33□□□□□ -2.36
SIX3O95343 AC022523.2-201ENST00000561045 150 ntBASIC0.33□□□□□ -2.36
SIX3O95343 MIR3678-201ENST00000578455 94 ntBASIC0.33□□□□□ -2.36
SIX3O95343 MIR4744-201ENST00000581563 82 ntBASIC0.33□□□□□ -2.36
SIX3O95343 MIR4282-201ENST00000583613 67 ntBASIC0.33□□□□□ -2.36
SIX3O95343 AL662814.1-201ENST00000617364 121 ntBASIC0.33□□□□□ -2.36
SIX3O95343 SNORD114-31-201ENST00000363219 75 ntBASIC0.32□□□□□ -2.36
SIX3O95343 Y_RNA.308-201ENST00000365043 101 ntBASIC0.32□□□□□ -2.36
SIX3O95343 SNORA26.6-201ENST00000391256 115 ntBASIC0.32□□□□□ -2.36
SIX3O95343 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.32□□□□□ -2.36
SIX3O95343 Y_RNA.797-201ENST00000515977 94 ntBASIC0.32□□□□□ -2.36
SIX3O95343 AC008737.2-201ENST00000599446 118 ntBASIC0.32□□□□□ -2.36
SIX3O95343 Y_RNA.292-201ENST00000364904 97 ntBASIC0.31□□□□□ -2.36
SIX3O95343 Y_RNA.476-201ENST00000384347 108 ntBASIC0.31□□□□□ -2.36
SIX3O95343 MIR606-201ENST00000384851 96 ntBASIC0.31□□□□□ -2.36
SIX3O95343 MIR518A1-201ENST00000385068 85 ntBASIC0.31□□□□□ -2.36
SIX3O95343 MIR1207-201ENST00000408249 87 ntBASIC0.31□□□□□ -2.36
SIX3O95343 MIR548H3-201ENST00000408771 118 ntBASIC0.31□□□□□ -2.36
SIX3O95343 AL365205.2-201ENST00000594586 68 ntBASIC0.31□□□□□ -2.36
SIX3O95343 SNORA25.18-201ENST00000607153 114 ntBASIC0.31□□□□□ -2.36
SIX3O95343 MIR376A2-201ENST00000636782 80 ntBASIC0.31□□□□□ -2.36
SIX3O95343 SNORA22.1-201ENST00000362701 134 ntBASIC0.3□□□□□ -2.36
SIX3O95343 Y_RNA.149-201ENST00000363558 117 ntBASIC0.3□□□□□ -2.36
SIX3O95343 Y_RNA.326-201ENST00000365176 113 ntBASIC0.3□□□□□ -2.36
SIX3O95343 Y_RNA.459-201ENST00000384251 102 ntBASIC0.3□□□□□ -2.36
SIX3O95343 MIR378D2-201ENST00000580636 98 ntBASIC0.3□□□□□ -2.36
SIX3O95343 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.3□□□□□ -2.36
SIX3O95343 Y_RNA.288-201ENST00000364854 92 ntBASIC0.29□□□□□ -2.36
SIX3O95343 Y_RNA.430-201ENST00000384081 110 ntBASIC0.29□□□□□ -2.36
SIX3O95343 RNU4-70P-201ENST00000384579 139 ntBASIC0.29□□□□□ -2.36
SIX3O95343 RNU6-493P-201ENST00000391321 108 ntBASIC0.29□□□□□ -2.36
SIX3O95343 RPS29P8-201ENST00000445109 171 ntBASIC0.29□□□□□ -2.36
SIX3O95343 RNU6-893P-201ENST00000458841 100 ntBASIC0.29□□□□□ -2.36
SIX3O95343 AC133485.4-201ENST00000561835 220 ntBASIC0.29□□□□□ -2.36
SIX3O95343 AC021613.1-201ENST00000623880 111 ntBASIC0.29□□□□□ -2.36
SIX3O95343 RNU4-16P-201ENST00000364737 141 ntBASIC0.28□□□□□ -2.36
SIX3O95343 Y_RNA.396-201ENST00000383949 103 ntBASIC0.28□□□□□ -2.36
SIX3O95343 RNU4-43P-201ENST00000410628 137 ntBASIC0.28□□□□□ -2.36
SIX3O95343 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
SIX3O95343 RNU2-4P-201ENST00000606190 192 ntBASIC0.28□□□□□ -2.36
SIX3O95343 Y_RNA.13-201ENST00000362403 112 ntBASIC0.27□□□□□ -2.37
SIX3O95343 Y_RNA.145-201ENST00000363527 102 ntBASIC0.27□□□□□ -2.37
SIX3O95343 RNA5SP205-201ENST00000364653 136 ntBASIC0.27□□□□□ -2.37
SIX3O95343 RNU6-1327P-201ENST00000365302 105 ntBASIC0.27□□□□□ -2.37
SIX3O95343 RNU6-597P-201ENST00000365620 102 ntBASIC0.27□□□□□ -2.37
SIX3O95343 MIR601-201ENST00000385256 79 ntBASIC0.27□□□□□ -2.37
SIX3O95343 RNU6-578P-201ENST00000390980 103 ntBASIC0.27□□□□□ -2.37
SIX3O95343 RNU2-38P-201ENST00000410856 79 ntBASIC0.27□□□□□ -2.37
SIX3O95343 Y_RNA.617-201ENST00000410920 90 ntBASIC0.27□□□□□ -2.37
SIX3O95343 RNY3P16-201ENST00000516338 101 ntBASIC0.27□□□□□ -2.37
SIX3O95343 AC141846.1-201ENST00000568348 142 ntBASIC0.27□□□□□ -2.37
SIX3O95343 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.26□□□□□ -2.37
SIX3O95343 MIR103A1-201ENST00000362165 78 ntBASIC0.26□□□□□ -2.37
SIX3O95343 Y_RNA.47-201ENST00000362697 108 ntBASIC0.26□□□□□ -2.37
SIX3O95343 SNORD27-201ENST00000363981 72 ntBASIC0.26□□□□□ -2.37
SIX3O95343 RNU6-1229P-201ENST00000364295 107 ntBASIC0.26□□□□□ -2.37
SIX3O95343 SNORA8.2-201ENST00000384372 139 ntBASIC0.26□□□□□ -2.37
SIX3O95343 SNORA18-201ENST00000384416 132 ntBASIC0.26□□□□□ -2.37
SIX3O95343 AL512326.2-201ENST00000426359 151 ntBASIC0.26□□□□□ -2.37
SIX3O95343 Y_RNA.812-201ENST00000610788 101 ntBASIC0.26□□□□□ -2.37
SIX3O95343 Y_RNA.784-201ENST00000613803 101 ntBASIC0.26□□□□□ -2.37
SIX3O95343 Y_RNA.787-201ENST00000616522 101 ntBASIC0.26□□□□□ -2.37
SIX3O95343 Y_RNA.780-201ENST00000617336 101 ntBASIC0.26□□□□□ -2.37
SIX3O95343 Y_RNA.801-201ENST00000619005 101 ntBASIC0.26□□□□□ -2.37
SIX3O95343 MIR101-1-201ENST00000362265 75 ntBASIC0.25□□□□□ -2.37
SIX3O95343 Y_RNA.65-201ENST00000362846 100 ntBASIC0.25□□□□□ -2.37
SIX3O95343 Y_RNA.76-201ENST00000362931 109 ntBASIC0.25□□□□□ -2.37
SIX3O95343 RNU6-1099P-201ENST00000363533 107 ntBASIC0.25□□□□□ -2.37
SIX3O95343 SNORA25.7-201ENST00000364375 127 ntBASIC0.25□□□□□ -2.37
SIX3O95343 MIR644A-201ENST00000385262 94 ntBASIC0.25□□□□□ -2.37
SIX3O95343 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.25□□□□□ -2.37
SIX3O95343 RNU6-1149P-201ENST00000516810 97 ntBASIC0.25□□□□□ -2.37
SIX3O95343 DEFB131E-201ENST00000532329 154 ntBASIC0.25□□□□□ -2.37
SIX3O95343 MIR4643-201ENST00000577473 78 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 245.4 ms