Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AC141273.2-201ENST00000618989 130 ntBASIC0.31□□□□□ -2.36
TRAV40A0A0B4J280 MIR103A1-201ENST00000362165 78 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 MIR411-201ENST00000362239 96 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-403P-201ENST00000363163 104 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.121-201ENST00000363309 113 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-818P-201ENST00000364837 108 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-702P-201ENST00000364982 107 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.430-201ENST00000384081 110 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 SNORA18-201ENST00000384416 132 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.556-201ENST00000384677 113 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 MIR624-201ENST00000385217 97 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 MIR1302-3-201ENST00000408128 138 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-447P-201ENST00000410293 104 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-1118P-201ENST00000410382 104 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-1076P-201ENST00000410397 104 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-355P-201ENST00000410427 104 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-791P-201ENST00000410467 104 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-705P-201ENST00000410601 104 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-1100P-201ENST00000410691 104 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-860P-201ENST00000410860 104 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU4-83P-201ENST00000410863 133 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-1217P-201ENST00000411276 104 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-785P-201ENST00000411324 104 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU7-80P-201ENST00000459562 61 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 SNORA25.16-201ENST00000516741 121 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU2-60P-201ENST00000517290 128 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 U6.90-201ENST00000614007 104 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 U6.70-201ENST00000620287 104 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 MIR3658-201ENST00000636291 56 ntBASIC0.3□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-349P-201ENST00000362402 107 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.75-201ENST00000362927 97 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 SNORA36.1-201ENST00000363424 132 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 RNA5SP325-201ENST00000363756 130 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 RNY1P13-201ENST00000365030 105 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.452-201ENST00000384202 108 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 AL512326.2-201ENST00000426359 151 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 RNA5SP236-201ENST00000516169 116 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 RNU4-71P-201ENST00000516258 113 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 RNA5SP94-201ENST00000516917 108 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 AC018659.1-201ENST00000551083 169 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 AC133485.4-201ENST00000561835 220 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 MTND5P34-201ENST00000568888 325 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 MIR3678-201ENST00000578455 94 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 MIR4491-201ENST00000581087 68 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 SNORA25.18-201ENST00000607153 114 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.29□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.83-201ENST00000363005 113 ntBASIC0.28□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.200-201ENST00000364018 102 ntBASIC0.28□□□□□ -2.36
TRAV40A0A0B4J280 RNU6-463P-201ENST00000384340 107 ntBASIC0.28□□□□□ -2.36
TRAV40A0A0B4J280 Y_RNA.521-201ENST00000384560 114 ntBASIC0.28□□□□□ -2.36
TRAV40A0A0B4J280 MT-TF-201ENST00000387314 71 ntBASIC0.28□□□□□ -2.36
TRAV40A0A0B4J280 RNA5SP237-201ENST00000410414 113 ntBASIC0.28□□□□□ -2.36
TRAV40A0A0B4J280 RNA5SP144-201ENST00000410846 116 ntBASIC0.28□□□□□ -2.36
TRAV40A0A0B4J280 RNU5E-9P-201ENST00000411164 104 ntBASIC0.28□□□□□ -2.36
TRAV40A0A0B4J280 MIR1270-201ENST00000459320 83 ntBASIC0.28□□□□□ -2.36
TRAV40A0A0B4J280 RNA5SP121-201ENST00000516537 101 ntBASIC0.28□□□□□ -2.36
TRAV40A0A0B4J280 AC078938.1-201ENST00000620993 318 ntBASIC0.28□□□□□ -2.36
TRAV40A0A0B4J280 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.28□□□□□ -2.37
TRAV40A0A0B4J280 MIRLET7D-201ENST00000362263 87 ntBASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 Y_RNA.32-201ENST00000362589 110 ntBASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 Y_RNA.144-201ENST00000363521 113 ntBASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 RNA5SP245-201ENST00000364239 121 ntBASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 SNORA32-201ENST00000384072 121 ntBASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 Y_RNA.454-201ENST00000384224 113 ntBASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 Y_RNA.478-201ENST00000384358 107 ntBASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 RNU6-588P-201ENST00000410281 105 ntBASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 Y_RNA.793-201ENST00000411222 111 ntBASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 RNU2-35P-201ENST00000516446 142 ntBASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 RNU6-448P-201ENST00000517052 107 ntBASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 AC009779.6-201ENST00000603972 165 ntBASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
TRAV40A0A0B4J280 SNORA25.7-201ENST00000364375 127 ntBASIC0.26□□□□□ -2.37
TRAV40A0A0B4J280 RNU6-716P-201ENST00000365621 103 ntBASIC0.26□□□□□ -2.37
TRAV40A0A0B4J280 Y_RNA.497-201ENST00000384447 98 ntBASIC0.26□□□□□ -2.37
TRAV40A0A0B4J280 SNORA72.6-201ENST00000384520 129 ntBASIC0.26□□□□□ -2.37
TRAV40A0A0B4J280 SNORA31.14-201ENST00000516728 116 ntBASIC0.26□□□□□ -2.37
TRAV40A0A0B4J280 RNU7-70P-201ENST00000516941 66 ntBASIC0.26□□□□□ -2.37
TRAV40A0A0B4J280 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.26□□□□□ -2.37
TRAV40A0A0B4J280 MIR3152-201ENST00000579801 74 ntBASIC0.26□□□□□ -2.37
TRAV40A0A0B4J280 MIR4431-201ENST00000579990 94 ntBASIC0.26□□□□□ -2.37
TRAV40A0A0B4J280 AL359881.1-201ENST00000602916 267 ntBASIC0.26□□□□□ -2.37
TRAV40A0A0B4J280 MIR8087-201ENST00000612745 78 ntBASIC0.26□□□□□ -2.37
TRAV40A0A0B4J280 MIR6082-201ENST00000613604 109 ntBASIC0.26□□□□□ -2.37
TRAV40A0A0B4J280 MIR924-201ENST00000638017 53 ntBASIC0.26□□□□□ -2.37
TRAV40A0A0B4J280 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 MIR330-201ENST00000362196 94 ntBASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 SNORD44.1-201ENST00000363202 61 ntBASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 Y_RNA.233-201ENST00000364407 101 ntBASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 RNU6-949P-201ENST00000384040 107 ntBASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 RNY1P6-201ENST00000384193 109 ntBASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 SNORA20-201ENST00000384662 132 ntBASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 RNU6-1086P-201ENST00000410930 100 ntBASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 AC074198.2-201ENST00000508153 258 ntBASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 RNU7-79P-201ENST00000516082 62 ntBASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 RNU6-240P-201ENST00000516098 97 ntBASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 RN7SKP12-201ENST00000516275 143 ntBASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 MIR4514-201ENST00000581410 57 ntBASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 MIR4719-201ENST00000585233 84 ntBASIC0.25□□□□□ -2.37
TRAV40A0A0B4J280 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms