Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Smc1aQ9CU62 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Olfr129-201ENSMUST00000122318 993 ntBASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Smc1aQ9CU62 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Mzt1-203ENSMUST00000227948 952 ntBASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Smc1aQ9CU62 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Gm14026-201ENSMUST00000120625 1789 ntBASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Smc1aQ9CU62 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Smc1aQ9CU62 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms