Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Cstf1Q99LC2 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Cstf1Q99LC2 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Cstf1Q99LC2 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
Cstf1Q99LC2 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Cstf1Q99LC2 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC15.96■□□□□ 0.15
Cstf1Q99LC2 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Cstf1Q99LC2 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.14
Cstf1Q99LC2 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Cstf1Q99LC2 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Cstf1Q99LC2 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.14
Cstf1Q99LC2 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Cstf1Q99LC2 Gm11873-201ENSMUST00000117877 1304 ntBASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Gm5253-201ENSMUST00000187104 1025 ntBASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Gm7229-201ENSMUST00000214719 1007 ntBASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 AC159106.1-201ENSMUST00000224421 690 ntBASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Gm37519-201ENSMUST00000191687 2210 ntBASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cstf1Q99LC2 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC15.93■□□□□ 0.14
Cstf1Q99LC2 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC15.93■□□□□ 0.14
Cstf1Q99LC2 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Mir6956-201ENSMUST00000183598 62 ntBASIC15.93■□□□□ 0.14
Cstf1Q99LC2 AC139382.1-201ENSMUST00000221402 498 ntBASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cstf1Q99LC2 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Cstf1Q99LC2 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cstf1Q99LC2 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms