Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm7286-201ENSMUST00000182691 1007 ntBASIC17.82■□□□□ 0.44
Col11a1Q61245 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC17.82■□□□□ 0.44
Col11a1Q61245 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col11a1Q61245 Gm5184-201ENSMUST00000220417 1702 ntBASIC17.82■□□□□ 0.44
Col11a1Q61245 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC17.82■□□□□ 0.44
Col11a1Q61245 CT025555.1-201ENSMUST00000225901 1217 ntBASIC17.82■□□□□ 0.44
Col11a1Q61245 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col11a1Q61245 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC17.82■□□□□ 0.44
Col11a1Q61245 Gm10154-201ENSMUST00000084445 354 ntBASIC17.82■□□□□ 0.44
Col11a1Q61245 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Col11a1Q61245 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Col11a1Q61245 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col11a1Q61245 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col11a1Q61245 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Col11a1Q61245 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Col11a1Q61245 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col11a1Q61245 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col11a1Q61245 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col11a1Q61245 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col11a1Q61245 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Col11a1Q61245 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col11a1Q61245 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Col11a1Q61245 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Col11a1Q61245 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
Col11a1Q61245 Gm12151-201ENSMUST00000121374 290 ntBASIC17.8■□□□□ 0.44
Col11a1Q61245 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC17.8■□□□□ 0.44
Col11a1Q61245 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col11a1Q61245 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col11a1Q61245 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col11a1Q61245 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col11a1Q61245 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Col11a1Q61245 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col11a1Q61245 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col11a1Q61245 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col11a1Q61245 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col11a1Q61245 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col11a1Q61245 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col11a1Q61245 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC17.79■□□□□ 0.44
Col11a1Q61245 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC17.79■□□□□ 0.44
Col11a1Q61245 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 H2-Pa-201ENSMUST00000182803 626 ntBASIC17.79■□□□□ 0.44
Col11a1Q61245 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC17.79■□□□□ 0.44
Col11a1Q61245 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC17.79■□□□□ 0.44
Col11a1Q61245 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Col11a1Q61245 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Col11a1Q61245 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC17.79■□□□□ 0.44
Col11a1Q61245 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC17.79■□□□□ 0.44
Col11a1Q61245 Gm37811-201ENSMUST00000192416 2601 ntBASIC17.79■□□□□ 0.44
Col11a1Q61245 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Col11a1Q61245 Gm27437-201ENSMUST00000183429 107 ntBASIC17.79■□□□□ 0.44
Col11a1Q61245 CT030684.1-201ENSMUST00000227292 914 ntBASIC17.79■□□□□ 0.44
Col11a1Q61245 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col11a1Q61245 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col11a1Q61245 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col11a1Q61245 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col11a1Q61245 Grk6-207ENSMUST00000225925 2769 ntBASIC17.78■□□□□ 0.44
Col11a1Q61245 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col11a1Q61245 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col11a1Q61245 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col11a1Q61245 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col11a1Q61245 AC159621.2-201ENSMUST00000223519 1326 ntBASIC17.78■□□□□ 0.44
Col11a1Q61245 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col11a1Q61245 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC17.78■□□□□ 0.44
Col11a1Q61245 Gm27618-201ENSMUST00000183671 60 ntBASIC17.78■□□□□ 0.44
Col11a1Q61245 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col11a1Q61245 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC17.78■□□□□ 0.44
Col11a1Q61245 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC17.78■□□□□ 0.44
Col11a1Q61245 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col11a1Q61245 Gm36858-201ENSMUST00000194501 2391 ntBASIC17.78■□□□□ 0.44
Col11a1Q61245 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col11a1Q61245 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC17.78■□□□□ 0.44
Col11a1Q61245 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col11a1Q61245 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC17.78■□□□□ 0.44
Col11a1Q61245 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col11a1Q61245 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Col11a1Q61245 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col11a1Q61245 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC17.77■□□□□ 0.44
Col11a1Q61245 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Col11a1Q61245 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC17.77■□□□□ 0.44
Col11a1Q61245 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col11a1Q61245 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC17.77■□□□□ 0.44
Col11a1Q61245 Gm7653-201ENSMUST00000214567 508 ntBASIC17.77■□□□□ 0.44
Col11a1Q61245 Gm5779-201ENSMUST00000218467 910 ntBASIC17.77■□□□□ 0.44
Col11a1Q61245 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col11a1Q61245 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col11a1Q61245 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Col11a1Q61245 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms