Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 MT-TI-201ENST00000387365 69 ntBASIC1.66□□□□□ -2.14
NR2E3Q9Y5X4 RNU6-1190P-201ENST00000410811 104 ntBASIC1.66□□□□□ -2.14
NR2E3Q9Y5X4 AL035398.1-201ENST00000430869 322 ntBASIC1.66□□□□□ -2.14
NR2E3Q9Y5X4 RPL39P39-201ENST00000455840 151 ntBASIC1.66□□□□□ -2.14
NR2E3Q9Y5X4 RPS29P29-201ENST00000456396 171 ntBASIC1.66□□□□□ -2.14
NR2E3Q9Y5X4 RNU7-45P-201ENST00000459460 63 ntBASIC1.66□□□□□ -2.14
NR2E3Q9Y5X4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.66□□□□□ -2.14
NR2E3Q9Y5X4 RNU6-834P-201ENST00000362367 110 ntBASIC1.65□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-215P-201ENST00000365169 102 ntBASIC1.65□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-690P-201ENST00000365242 106 ntBASIC1.65□□□□□ -2.15
NR2E3Q9Y5X4 Y_RNA.454-201ENST00000384224 113 ntBASIC1.65□□□□□ -2.15
NR2E3Q9Y5X4 SNORD20-201ENST00000384550 80 ntBASIC1.65□□□□□ -2.15
NR2E3Q9Y5X4 Y_RNA.537-201ENST00000384626 109 ntBASIC1.65□□□□□ -2.15
NR2E3Q9Y5X4 MIR1323-201ENST00000408090 73 ntBASIC1.65□□□□□ -2.15
NR2E3Q9Y5X4 snoU13.25-201ENST00000458945 104 ntBASIC1.65□□□□□ -2.15
NR2E3Q9Y5X4 RNU1-98P-201ENST00000458992 160 ntBASIC1.65□□□□□ -2.15
NR2E3Q9Y5X4 RNU2-35P-201ENST00000516446 142 ntBASIC1.65□□□□□ -2.15
NR2E3Q9Y5X4 AC025166.1-201ENST00000612411 163 ntBASIC1.65□□□□□ -2.15
NR2E3Q9Y5X4 AC243994.1-201ENST00000618627 109 ntBASIC1.65□□□□□ -2.15
NR2E3Q9Y5X4 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
NR2E3Q9Y5X4 MTND5P18-201ENST00000445624 1801 ntBASIC1.64□□□□□ -2.15
NR2E3Q9Y5X4 RNU4-16P-201ENST00000364737 141 ntBASIC1.64□□□□□ -2.15
NR2E3Q9Y5X4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
NR2E3Q9Y5X4 AL354695.1-201ENST00000427935 228 ntBASIC1.64□□□□□ -2.15
NR2E3Q9Y5X4 RNU7-73P-201ENST00000458743 63 ntBASIC1.64□□□□□ -2.15
NR2E3Q9Y5X4 RNU7-41P-201ENST00000515917 61 ntBASIC1.64□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-958P-201ENST00000516995 106 ntBASIC1.64□□□□□ -2.15
NR2E3Q9Y5X4 AC008133.2-201ENST00000624540 351 ntBASIC1.64□□□□□ -2.15
NR2E3Q9Y5X4 MIR6841-201ENST00000637129 72 ntBASIC1.64□□□□□ -2.15
NR2E3Q9Y5X4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 SNORA70.7-201ENST00000384159 133 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-1144P-201ENST00000384247 104 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-1104P-201ENST00000384723 104 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 MIR1263-201ENST00000408324 86 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 MIR548J-201ENST00000408833 112 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 RNA5SP144-201ENST00000410846 116 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 RNU7-123P-201ENST00000515911 60 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 RNY4P20-201ENST00000516678 93 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-1258P-201ENST00000516911 111 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 MIR3192-201ENST00000584920 77 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 AL020996.3-201ENST00000606617 222 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 MIR8055-201ENST00000610739 97 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 AC021613.1-201ENST00000623880 111 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 U6.95-201ENST00000636931 70 ntBASIC1.63□□□□□ -2.15
NR2E3Q9Y5X4 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 Y_RNA.298-201ENST00000364960 107 ntBASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-476P-201ENST00000384726 107 ntBASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-1319P-201ENST00000390855 104 ntBASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-747P-201ENST00000390928 104 ntBASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-241P-201ENST00000391148 104 ntBASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-1064P-201ENST00000410626 104 ntBASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-177P-201ENST00000411257 104 ntBASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 RNU7-70P-201ENST00000516941 66 ntBASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-165P-201ENST00000517170 99 ntBASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 MIR4305-201ENST00000583252 102 ntBASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 AL096861.1-201ENST00000610899 123 ntBASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.62□□□□□ -2.15
NR2E3Q9Y5X4 RNA5SP48-201ENST00000363969 126 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 Y_RNA.528-201ENST00000384575 108 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 RNA5SP136-201ENST00000410906 107 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 RNU7-67P-201ENST00000459003 62 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-947P-201ENST00000516264 106 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 RN7SKP88-201ENST00000516847 250 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 AC022523.2-201ENST00000561045 150 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 AC021443.1-201ENST00000604478 211 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 7SK.8-201ENST00000612110 250 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 7SK.11-201ENST00000615477 250 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 MIR6129-201ENST00000616087 109 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 7SK.13-201ENST00000622040 250 ntBASIC1.61□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-1325P-201ENST00000364905 105 ntBASIC1.6□□□□□ -2.15
NR2E3Q9Y5X4 SNORA51.10-201ENST00000384418 136 ntBASIC1.6□□□□□ -2.15
NR2E3Q9Y5X4 MIR1302-7-201ENST00000408841 72 ntBASIC1.6□□□□□ -2.15
NR2E3Q9Y5X4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.6□□□□□ -2.15
NR2E3Q9Y5X4 HMGN1P33-201ENST00000432945 451 ntBASIC1.6□□□□□ -2.15
NR2E3Q9Y5X4 RNU7-164P-201ENST00000459221 62 ntBASIC1.6□□□□□ -2.15
NR2E3Q9Y5X4 MIR6717-201ENST00000622747 73 ntBASIC1.6□□□□□ -2.15
NR2E3Q9Y5X4 Y_RNA.30-201ENST00000362572 97 ntBASIC1.59□□□□□ -2.15
NR2E3Q9Y5X4 Y_RNA.346-201ENST00000365385 112 ntBASIC1.59□□□□□ -2.15
NR2E3Q9Y5X4 AC090844.1-201ENST00000422019 156 ntBASIC1.59□□□□□ -2.15
NR2E3Q9Y5X4 AL512326.2-201ENST00000426359 151 ntBASIC1.59□□□□□ -2.15
NR2E3Q9Y5X4 COX6CP6-201ENST00000490840 228 ntBASIC1.59□□□□□ -2.15
NR2E3Q9Y5X4 RNU6-589P-201ENST00000516485 107 ntBASIC1.59□□□□□ -2.15
NR2E3Q9Y5X4 RNU7-53P-201ENST00000516705 60 ntBASIC1.59□□□□□ -2.15
NR2E3Q9Y5X4 MIR548AO-201ENST00000579992 96 ntBASIC1.59□□□□□ -2.15
NR2E3Q9Y5X4 MIR302B-201ENST00000362188 73 ntBASIC1.58□□□□□ -2.16
NR2E3Q9Y5X4 RNU6-1056P-201ENST00000383996 107 ntBASIC1.58□□□□□ -2.16
NR2E3Q9Y5X4 Y_RNA.430-201ENST00000384081 110 ntBASIC1.58□□□□□ -2.16
NR2E3Q9Y5X4 snoU13.16-201ENST00000459350 104 ntBASIC1.58□□□□□ -2.16
NR2E3Q9Y5X4 AL133373.1-201ENST00000497098 94 ntBASIC1.58□□□□□ -2.16
NR2E3Q9Y5X4 CYP3A52P-201ENST00000563326 91 ntBASIC1.58□□□□□ -2.16
NR2E3Q9Y5X4 RN7SL793P-201ENST00000583259 296 ntBASIC1.58□□□□□ -2.16
NR2E3Q9Y5X4 AL670379.3-201ENST00000605040 251 ntBASIC1.58□□□□□ -2.16
NR2E3Q9Y5X4 MIR4251-201ENST00000635819 61 ntBASIC1.58□□□□□ -2.16
NR2E3Q9Y5X4 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.58□□□□□ -2.16
NR2E3Q9Y5X4 Y_RNA.171-201ENST00000363760 102 ntBASIC1.57□□□□□ -2.16
NR2E3Q9Y5X4 Y_RNA.198-201ENST00000364013 98 ntBASIC1.57□□□□□ -2.16
NR2E3Q9Y5X4 RNY4P18-201ENST00000391107 89 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 219.5 ms