Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 RNU6-1211P-201ENST00000459179 105 ntBASIC1.39□□□□□ -2.19
PCDHA1Q9Y5I3 RNU7-21P-201ENST00000459430 62 ntBASIC1.39□□□□□ -2.19
PCDHA1Q9Y5I3 RNU6-789P-201ENST00000517105 102 ntBASIC1.39□□□□□ -2.19
PCDHA1Q9Y5I3 MIR4264-201ENST00000583520 66 ntBASIC1.39□□□□□ -2.19
PCDHA1Q9Y5I3 AC021443.1-201ENST00000604478 211 ntBASIC1.39□□□□□ -2.19
PCDHA1Q9Y5I3 MIR7974-201ENST00000615835 79 ntBASIC1.39□□□□□ -2.19
PCDHA1Q9Y5I3 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.39□□□□□ -2.19
PCDHA1Q9Y5I3 MIR377-201ENST00000362145 69 ntBASIC1.38□□□□□ -2.19
PCDHA1Q9Y5I3 RNA5SP327-201ENST00000362494 101 ntBASIC1.38□□□□□ -2.19
PCDHA1Q9Y5I3 SNORA75.2-201ENST00000391138 150 ntBASIC1.38□□□□□ -2.19
PCDHA1Q9Y5I3 SNORA75.3-201ENST00000391231 150 ntBASIC1.38□□□□□ -2.19
PCDHA1Q9Y5I3 AL022718.1-201ENST00000412004 84 ntBASIC1.38□□□□□ -2.19
PCDHA1Q9Y5I3 RN7SKP19-201ENST00000516016 252 ntBASIC1.38□□□□□ -2.19
PCDHA1Q9Y5I3 RNU6-971P-201ENST00000516920 106 ntBASIC1.38□□□□□ -2.19
PCDHA1Q9Y5I3 AC132825.6-201ENST00000638861 357 ntBASIC1.38□□□□□ -2.19
PCDHA1Q9Y5I3 SNORD115-2-201ENST00000362842 82 ntBASIC1.37□□□□□ -2.19
PCDHA1Q9Y5I3 SNORD115-20-201ENST00000365099 82 ntBASIC1.37□□□□□ -2.19
PCDHA1Q9Y5I3 RNU6-580P-201ENST00000365159 107 ntBASIC1.37□□□□□ -2.19
PCDHA1Q9Y5I3 RNU6-80P-201ENST00000384195 107 ntBASIC1.37□□□□□ -2.19
PCDHA1Q9Y5I3 RNU6-959P-201ENST00000384671 107 ntBASIC1.37□□□□□ -2.19
PCDHA1Q9Y5I3 MIR1276-201ENST00000408707 83 ntBASIC1.37□□□□□ -2.19
PCDHA1Q9Y5I3 RNU6-955P-201ENST00000410497 104 ntBASIC1.37□□□□□ -2.19
PCDHA1Q9Y5I3 RNU4-61P-201ENST00000411243 107 ntBASIC1.37□□□□□ -2.19
PCDHA1Q9Y5I3 RPS29P23-201ENST00000458635 123 ntBASIC1.37□□□□□ -2.19
PCDHA1Q9Y5I3 AP000753.3-201ENST00000604083 169 ntBASIC1.37□□□□□ -2.19
PCDHA1Q9Y5I3 Y_RNA.298-201ENST00000364960 107 ntBASIC1.36□□□□□ -2.19
PCDHA1Q9Y5I3 SNORA25-201ENST00000384384 134 ntBASIC1.36□□□□□ -2.19
PCDHA1Q9Y5I3 RNU7-164P-201ENST00000459221 62 ntBASIC1.36□□□□□ -2.19
PCDHA1Q9Y5I3 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.36□□□□□ -2.19
PCDHA1Q9Y5I3 RNU2-35P-201ENST00000516446 142 ntBASIC1.36□□□□□ -2.19
PCDHA1Q9Y5I3 IGKV1-22-201ENST00000524313 326 ntBASIC1.36□□□□□ -2.19
PCDHA1Q9Y5I3 RNU6-654P-201ENST00000364373 107 ntBASIC1.35□□□□□ -2.19
PCDHA1Q9Y5I3 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
PCDHA1Q9Y5I3 RNU7-90P-201ENST00000459216 62 ntBASIC1.35□□□□□ -2.19
PCDHA1Q9Y5I3 RNU6-406P-201ENST00000516470 107 ntBASIC1.35□□□□□ -2.19
PCDHA1Q9Y5I3 RNA5SP102-201ENST00000516865 106 ntBASIC1.35□□□□□ -2.19
PCDHA1Q9Y5I3 RNU6-1258P-201ENST00000516911 111 ntBASIC1.35□□□□□ -2.19
PCDHA1Q9Y5I3 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
PCDHA1Q9Y5I3 RNU6-235P-201ENST00000362644 107 ntBASIC1.34□□□□□ -2.19
PCDHA1Q9Y5I3 Y_RNA.168-201ENST00000363740 102 ntBASIC1.34□□□□□ -2.19
PCDHA1Q9Y5I3 SNORD113-1-201ENST00000365321 69 ntBASIC1.34□□□□□ -2.19
PCDHA1Q9Y5I3 Y_RNA.531-201ENST00000384589 121 ntBASIC1.34□□□□□ -2.19
PCDHA1Q9Y5I3 MIR150-201ENST00000385048 84 ntBASIC1.34□□□□□ -2.19
PCDHA1Q9Y5I3 RNA5SP136-201ENST00000410906 107 ntBASIC1.34□□□□□ -2.19
PCDHA1Q9Y5I3 MRPL35P3-201ENST00000421557 364 ntBASIC1.34□□□□□ -2.19
PCDHA1Q9Y5I3 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.34□□□□□ -2.19
PCDHA1Q9Y5I3 snoU13.2-201ENST00000459201 104 ntBASIC1.34□□□□□ -2.19
PCDHA1Q9Y5I3 AC113410.1-201ENST00000505029 247 ntBASIC1.34□□□□□ -2.19
PCDHA1Q9Y5I3 AC004812.1-201ENST00000540773 146 ntBASIC1.34□□□□□ -2.19
PCDHA1Q9Y5I3 MIR6504-201ENST00000613520 61 ntBASIC1.34□□□□□ -2.19
PCDHA1Q9Y5I3 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.33□□□□□ -2.2
PCDHA1Q9Y5I3 Y_RNA.71-201ENST00000362892 104 ntBASIC1.33□□□□□ -2.2
PCDHA1Q9Y5I3 Y_RNA.171-201ENST00000363760 102 ntBASIC1.33□□□□□ -2.2
PCDHA1Q9Y5I3 Y_RNA.218-201ENST00000364218 104 ntBASIC1.33□□□□□ -2.2
PCDHA1Q9Y5I3 SNORD113.3-201ENST00000364630 78 ntBASIC1.33□□□□□ -2.2
PCDHA1Q9Y5I3 Y_RNA.330-201ENST00000365230 109 ntBASIC1.33□□□□□ -2.2
PCDHA1Q9Y5I3 MIRLET7F2-201ENST00000385277 83 ntBASIC1.33□□□□□ -2.2
PCDHA1Q9Y5I3 SNORD12C-201ENST00000386307 89 ntBASIC1.33□□□□□ -2.2
PCDHA1Q9Y5I3 AL512326.2-201ENST00000426359 151 ntBASIC1.33□□□□□ -2.2
PCDHA1Q9Y5I3 RNU7-113P-201ENST00000459273 62 ntBASIC1.33□□□□□ -2.2
PCDHA1Q9Y5I3 RNU7-123P-201ENST00000515911 60 ntBASIC1.33□□□□□ -2.2
PCDHA1Q9Y5I3 AC036111.3-201ENST00000526389 112 ntBASIC1.33□□□□□ -2.2
PCDHA1Q9Y5I3 AC027335.2-201ENST00000624030 375 ntBASIC1.33□□□□□ -2.2
PCDHA1Q9Y5I3 SNORD111-201ENST00000408139 94 ntBASIC1.32□□□□□ -2.2
PCDHA1Q9Y5I3 AC002429.1-201ENST00000437672 148 ntBASIC1.32□□□□□ -2.2
PCDHA1Q9Y5I3 RNY4P20-201ENST00000516678 93 ntBASIC1.32□□□□□ -2.2
PCDHA1Q9Y5I3 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.32□□□□□ -2.2
PCDHA1Q9Y5I3 AC106800.4-201ENST00000614905 153 ntBASIC1.32□□□□□ -2.2
PCDHA1Q9Y5I3 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
PCDHA1Q9Y5I3 MIR563-201ENST00000385080 79 ntBASIC1.31□□□□□ -2.2
PCDHA1Q9Y5I3 RN7SKP179-201ENST00000516126 217 ntBASIC1.31□□□□□ -2.2
PCDHA1Q9Y5I3 RNU6-781P-201ENST00000516377 101 ntBASIC1.31□□□□□ -2.2
PCDHA1Q9Y5I3 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
PCDHA1Q9Y5I3 AC008163.1-202ENST00000636004 2889 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 Y_RNA.299-201ENST00000364973 94 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 SNORD58C-201ENST00000365223 64 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 SNORD116-14-201ENST00000383894 92 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 SNORD116-17-201ENST00000383929 92 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 SNORD116-15-201ENST00000384445 92 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 SNORD116-19-201ENST00000384729 92 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 MIR19B1-201ENST00000384829 87 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 MIR588-201ENST00000384900 83 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 MIR222-201ENST00000384992 110 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 RNU6-205P-201ENST00000390858 107 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 AC063976.4-201ENST00000421971 163 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 RNU6-659P-201ENST00000516454 104 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 RNU6-1234P-201ENST00000516877 103 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 Y_RNA.712-201ENST00000517011 92 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 MIR6740-201ENST00000618268 113 ntBASIC1.3□□□□□ -2.2
PCDHA1Q9Y5I3 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.29□□□□□ -2.2
PCDHA1Q9Y5I3 Y_RNA.127-201ENST00000363386 109 ntBASIC1.29□□□□□ -2.2
PCDHA1Q9Y5I3 Y_RNA.470-201ENST00000384307 117 ntBASIC1.29□□□□□ -2.2
PCDHA1Q9Y5I3 RNA5SP95-201ENST00000410319 137 ntBASIC1.29□□□□□ -2.2
PCDHA1Q9Y5I3 RNU7-62P-201ENST00000458856 62 ntBASIC1.29□□□□□ -2.2
PCDHA1Q9Y5I3 COX6CP6-201ENST00000490840 228 ntBASIC1.29□□□□□ -2.2
PCDHA1Q9Y5I3 RNU6-772P-201ENST00000516042 105 ntBASIC1.29□□□□□ -2.2
PCDHA1Q9Y5I3 AC019288.1-201ENST00000557918 224 ntBASIC1.29□□□□□ -2.2
PCDHA1Q9Y5I3 MIR4295-201ENST00000585286 85 ntBASIC1.29□□□□□ -2.2
PCDHA1Q9Y5I3 MIR26B-201ENST00000362251 77 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms